Information report for Os4CL3
Gene Details
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Functional Descriptions
- Suppression of Os4CL3 expression resulted in significant lignin reduction, shorter plant growth, and other morphological changes.
- Further, the loss-of-function of Os4CL3 and Os4CL4 notably reduced cell-wall-bound ferulates, indicating their roles in cell wall feruloylation.
- A series of chemical and nuclear magnetic resonance analyses revealed that loss-of-function of Os4CL3 and Os4CL4 differently altered the composition of lignin polymer units.
- Loss of function of Os4CL3 induced marked reductions in the major guaiacyl and syringyl lignin units derived from both the conserved non-γ-p-coumaroylated and the grass-specific γ-p-coumaroylated monolignols, with more prominent reductions in guaiacyl units than in syringyl units.
- DNA methylation variation of lignin synthesis-related OsSWN1, OsMYBX9, OsPAL1 and Os4CL3 mediated their expression level differnece and affected the ratio of cellulose to lignin content.
Literature and News
- Functional characterization of evolutionarily divergent 4-coumarate:coenzyme a ligases in rice . DOI: 10.1104/pp.111.178301 ; PMID: 21807887
- Genome-edited rice deficient in two 4-COUMARATE:COENZYME A LIGASE genes displays diverse lignin alterations . DOI: 10.1093/plphys/kiac450 ; PMID: 36149320
- Lodging variation of weedy rice in China and its epigenetic influencing mechanisms . DOI: 10.1093/jxb/erac480 ; PMID: 36478231
Gene Resources
- UniProt: Q6ETN3
- EMBL: AB234050, AP004838, AP008208
- AlphaFoldDB: Q6ETN3
- EnsemblPlants: Os02t0177600-01
- Gramene: Os02t0177600-01
- KEGG: dosa:Os02g0177600
- InterPro: IPR000873, IPR020845, IPR025110
- PANTHER: PTHR24096, PTHR24096:SF300
- SUPFAM: SSF56801
- PROSITE: PS00455
- Gene3D: 3.30.300.30, 3.40.50.12780
- OrthoDB: Q6ETN3
- SWISS-MODEL: Q6ETN3
- Conserved Domain Database: cd05904
- eggNOG: KOG1176
Sequences
cDNA Sequence
- >LOC_Os02g08100.1
TCCAGGAGACCTCGCCGCCGATCGATCAATCGCCGCCGCCGTCTCCTCGTGTAACCCTAGCTTAGTGGATTAGTTTAAGTGTTTGCCGGAGATTATGGGGTCGGTGGCGGCGGAGGAGGTGGTGGTGTTCCGGTCGAAGCTGCCGGACATCGAGATCGACAACAGCATGACGCTGCAGGAGTACTGCTTCGCGAGGATGGCGGAGGTCGGGGCGCGGCCGTGCCTGATCGACGGGCAGACCGGGGAGTCGTACACGTACGCGGAGGTGGAGTCCGCGTCGCGGCGCGCCGCGGCGGGGCTCCGGCGGATGGGGGTGGGCAAGGGCGACGTGGTGATGAGCCTCCTCCGCAACTGCCCCGAGTTCGCCTTCTCCTTCCTCGGCGCGGCCAGGCTGGGCGCCGCCACCACGACGGCGAACCCGTTCTACACGCCGCACGAGGTCCACCGCCAGGCGGAGGCCGCGGGCGCCAGGGTGATCGTCACCGAGGCGTGCGCCGTCGAGAAGGTGCGGGAGTTCGCCGCGGAGAGGGGCGTCCCCGTGGTCACCGTGGACGGCGCGTTCGACGGCTGCGTGGAGTTCCGCGAGGTGCTCGCCGCGGAGGAGCTCGACGCCGACGCCGACGTCCACCCCGACGACGTCGTCGCCCTCCCCTACTCCTCCGGCACCACCGGCCTCCCCAAGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCCCAGCAGGTGGATGGAGAGAACCCTAACCTGTACTTCAGCAAGGATGATGTTATACTATGCCTGCTGCCACTGTTCCACATCTACTCGCTCAACTCCGTGCTGCTGGCTGGCCTGCGTGCCGGGTCGACCATCGTGATCATGCGGAAGTTTGATCTTGGCGCGCTCGTCGACCTTGTGCGCAAGCACAACATCACCATCGCCCCCTTCGTGCCCCCCATCGTGGTGGAGATCGCCAAGAGCCCCCGCGTCACCGCGGAGGACCTCGCCTCCATCCGCATGGTCATGTCCGGTGCCGCGCCCATGGGGAAGGACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACAGGGTTACGGTATGACTGAGGCTGGGCCAGTGCTGGCAATGTGCCTGGCGTTTGCCAAGGAGCCCTTCAAGGTTAAGTCCGGGTCGTGCGGTACAGTGGTGCGCAACGCGGAGCTGAAGATCGTCGACCCCGACACCGGCACCTCCCTCGGCCGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGAAAGGCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGTGGCTGCACACCGGAGACATCGGCTTCGTCGACGACGACGACGAGATCTTCATCGTGGACAGGCTCAAGGAGATCATCAAGTACAAGGGGTTCCAGGTGCCACCGGCCGAGCTGGAGGCGCTGCTCATCACTCACCCGGAGATCAAGGACGCCGCCGTCGTCTCGATGAAGGATGATCTTGCCGGTGAAGTGCCAGTCGCCTTCATTGTCCGGACAGAAGGCTCAGAAATCACCGAGGATGAGATCAAGAAATTCGTTGCAAAAGAGGTGGTGTTCTACAAGAGGATCAACAAGGTGTTCTTCACCGATTCCATCCCCAAGAACCCTTCCGGCAAGATCCTCAGGAAGGACTTGAGAGCCAGGCTCGCCGCCGGCATCCCCGACGCCGTCGCCGCCGCCGCCGCCGATGCGCCCAAAAGCAGCTAAGGCCAACGCCGACGTTTTCTCTATTTTCAGTCACACAACCGGTGAAAAAAAAATGCAGAGATATGATGTTGCTGTCCATGAAAATGGAGGCAGAAATGGAGCAGAGGAAGTTTATAGTTTGGTTTGTTGGTTGGTTGATGCTGCTGCAGCAGCTTGTGCAATGTTCATAAAATGGCATTAATAATATTATTATTATTATTATACATAGATGATGTATTGTTTTTGACCATAAGAACAAGGCTGATTACAAAATAATACAGTGTATTAATTACGCCCTGTTTCTCTCTAC
CDS Sequence
- >LOC_Os02g08100.1
ATGGGGTCGGTGGCGGCGGAGGAGGTGGTGGTGTTCCGGTCGAAGCTGCCGGACATCGAGATCGACAACAGCATGACGCTGCAGGAGTACTGCTTCGCGAGGATGGCGGAGGTCGGGGCGCGGCCGTGCCTGATCGACGGGCAGACCGGGGAGTCGTACACGTACGCGGAGGTGGAGTCCGCGTCGCGGCGCGCCGCGGCGGGGCTCCGGCGGATGGGGGTGGGCAAGGGCGACGTGGTGATGAGCCTCCTCCGCAACTGCCCCGAGTTCGCCTTCTCCTTCCTCGGCGCGGCCAGGCTGGGCGCCGCCACCACGACGGCGAACCCGTTCTACACGCCGCACGAGGTCCACCGCCAGGCGGAGGCCGCGGGCGCCAGGGTGATCGTCACCGAGGCGTGCGCCGTCGAGAAGGTGCGGGAGTTCGCCGCGGAGAGGGGCGTCCCCGTGGTCACCGTGGACGGCGCGTTCGACGGCTGCGTGGAGTTCCGCGAGGTGCTCGCCGCGGAGGAGCTCGACGCCGACGCCGACGTCCACCCCGACGACGTCGTCGCCCTCCCCTACTCCTCCGGCACCACCGGCCTCCCCAAGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCCCAGCAGGTGGATGGAGAGAACCCTAACCTGTACTTCAGCAAGGATGATGTTATACTATGCCTGCTGCCACTGTTCCACATCTACTCGCTCAACTCCGTGCTGCTGGCTGGCCTGCGTGCCGGGTCGACCATCGTGATCATGCGGAAGTTTGATCTTGGCGCGCTCGTCGACCTTGTGCGCAAGCACAACATCACCATCGCCCCCTTCGTGCCCCCCATCGTGGTGGAGATCGCCAAGAGCCCCCGCGTCACCGCGGAGGACCTCGCCTCCATCCGCATGGTCATGTCCGGTGCCGCGCCCATGGGGAAGGACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACAGGGTTACGGTATGACTGAGGCTGGGCCAGTGCTGGCAATGTGCCTGGCGTTTGCCAAGGAGCCCTTCAAGGTTAAGTCCGGGTCGTGCGGTACAGTGGTGCGCAACGCGGAGCTGAAGATCGTCGACCCCGACACCGGCACCTCCCTCGGCCGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGAAAGGCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGTGGCTGCACACCGGAGACATCGGCTTCGTCGACGACGACGACGAGATCTTCATCGTGGACAGGCTCAAGGAGATCATCAAGTACAAGGGGTTCCAGGTGCCACCGGCCGAGCTGGAGGCGCTGCTCATCACTCACCCGGAGATCAAGGACGCCGCCGTCGTCTCGATGAAGGATGATCTTGCCGGTGAAGTGCCAGTCGCCTTCATTGTCCGGACAGAAGGCTCAGAAATCACCGAGGATGAGATCAAGAAATTCGTTGCAAAAGAGGTGGTGTTCTACAAGAGGATCAACAAGGTGTTCTTCACCGATTCCATCCCCAAGAACCCTTCCGGCAAGATCCTCAGGAAGGACTTGAGAGCCAGGCTCGCCGCCGGCATCCCCGACGCCGTCGCCGCCGCCGCCGCCGATGCGCCCAAAAGCAGCTAA
Protein Sequence
- >LOC_Os02g08100.1
MGSVAAEEVVVFRSKLPDIEIDNSMTLQEYCFARMAEVGARPCLIDGQTGESYTYAEVESASRRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGAARLGAATTTANPFYTPHEVHRQAEAAGARVIVTEACAVEKVREFAAERGVPVVTVDGAFDGCVEFREVLAAEELDADADVHPDDVVALPYSSGTTGLPKGVMLTHRSLITSVAQQVDGENPNLYFSKDDVILCLLPLFHIYSLNSVLLAGLRAGSTIVIMRKFDLGALVDLVRKHNITIAPFVPPIVVEIAKSPRVTAEDLASIRMVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGMTEAGPVLAMCLAFAKEPFKVKSGSCGTVVRNAELKIVDPDTGTSLGRNQSGEICIRGEQIMKGYLNDPEATKNTIDEDGWLHTGDIGFVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKDDLAGEVPVAFIVRTEGSEITEDEIKKFVAKEVVFYKRINKVFFTDSIPKNPSGKILRKDLRARLAAGIPDAVAAAAADAPKSS*