Information report for SPL42
Gene Details
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Functional Descriptions
- Consistently, multiple genes related to chloroplast development and chlorophyll biosynthesis were significantly down-regulated, whereas many genes involved in leaf senescence, ROS production, and defense responses were upregulated in the SPL42 mutant.
- SPL42 targets to the chloroplast and interacts with the multiple organelle RNA editing factors (MORFs) OsMORF8-1 and OsMORF8-2 to affect RNA editing.
- Map-based cloning revealed that SPL42 encodes a PBGD.
- The identification and characterization of SPL42 helps in elucidating the molecular mechanisms associated with chlorophyll synthesis and RNA editing in rice.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q6H6D2
- EMBL: AK060914, AK102265, AP005071
- AlphaFoldDB: Q6H6D2
- EnsemblPlants: Os02t0168800-01
- Gramene: Os02t0168800-01
- KEGG: dosa:Os02g0168800
- Orthologous matrix: LWQANHI
- InterPro: IPR000860, IPR022417, IPR022418
- PANTHER: PTHR11557, PTHR11557:SF0
- SUPFAM: SSF53850, SSF54782
- PROSITE: PS00533
- Gene3D: 3.30.160.40, 3.40.190.10
- OrthoDB: Q6H6D2
- SWISS-MODEL: Q6H6D2
- Conserved Domain Database: cd13648
- eggNOG: KOG2892
Sequences
cDNA Sequence
- >LOC_Os02g07230.1
ACATTATCCTCATCCATCCCAACACCCAACCCAAGACAGCATAAACACACCCCAGCCCAGCTCGACTAGAATACGAGAGAAAAATCCCATCTTTGGTCTCCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTCTGAAATTGTTGATTGTTGTACTTT - >LOC_Os02g07230.2
ACATTATCCTCATCCATCCCAACACCCAACCCAAGACAGCATAAACACACCCCAGCCCAGCTCGACTAGAATACGAGAGAAAAATCCCATCTTTGGTCTCCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTCTGAAATTGTTGATTGTTGTACTTT - >LOC_Os02g07230.3
ACATTATCCTCATCCATCCCAACACCCAACCCAAGACAGCATAAACACACCCCAGCCCAGCTCGACTAGAATACGAGAGAAAAATCCCATCTTTGGTCTCCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTCTGAAATTGTTGATTGTTGTACTTT
CDS Sequence
- >LOC_Os02g07230.1
ATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGA - >LOC_Os02g07230.2
ATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGA - >LOC_Os02g07230.3
ATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGA
Protein Sequence
- >LOC_Os02g07230.1
MPPPPRCAATTAHHSLLGSPTCLARPRRRCCPVRAAVAVQAEAQAKVSLIRIGTRGSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKEIDDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVGSASLRRQSQILYKYPSLKVVNFRGNVQTRLRKLKEGDVHATLLALAGLKRLNMAETATSVLSVDEMLPAVAQGAIGIACRSSDDTMMNYLSSLNHEDTRLAVACEREFLSVLDGNCRTPIAAYASRDKDGNCSFRGLLASPDGSTVYETSRTGPYDFDIMVEMGKDAGHELKAKAGPGFFDSLQ* - >LOC_Os02g07230.2
MPPPPRCAATTAHHSLLGSPTCLARPRRRCCPVRAAVAVQAEAQAKVSLIRIGTRGSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKEIDDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVGSASLRRQSQILYKYPSLKVVNFRGNVQTRLRKLKEGDVHATLLALAGLKRLNMAETATSVLSVDEMLPAVAQGAIGIACRSSDDTMMNYLSSLNHEDTRLAVACEREFLSVLDGNCRTPIAAYASRDKDGNCSFRGLLASPDGSTVYETSRTGPYDFDIMVEMGKDAGHELKAKAGPGFFDSLQ* - >LOC_Os02g07230.3
MPPPPRCAATTAHHSLLGSPTCLARPRRRCCPVRAAVAVQAEAQAKVSLIRIGTRGSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKEIDDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVGSASLRRQSQILYKYPSLKVVNFRGNVQTRLRKLKEGDVHATLLALAGLKRLNMAETATSVLSVDEMLPAVAQGAIGIACRSSDDTMMNYLSSLNHEDTRLAVACEREFLSVLDGNCRTPIAAYASRDKDGNCSFRGLLASPDGSTVYETSRTGPYDFDIMVEMGKDAGHELKAKAGPGFFDSLQ*