Gene Details:
- MSU gene ID: LOC_Os02g07230
- RAPdb gene ID: Os02g0168800
- Gene Symbol: SPL42
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Consistently, multiple genes related to chloroplast development and chlorophyll biosynthesis were significantly down-regulated, whereas many genes involved in leaf senescence, ROS production, and defense responses were upregulated in the SPL42 mutant.
- SPL42 targets to the chloroplast and interacts with the multiple organelle RNA editing factors (MORFs) OsMORF8-1 and OsMORF8-2 to affect RNA editing.
- Map-based cloning revealed that SPL42 encodes a PBGD.
- The identification and characterization of SPL42 helps in elucidating the molecular mechanisms associated with chlorophyll synthesis and RNA editing in rice.
Function-related keywords:
- leaf , leaf-senescence , chloroplast , development , defense-response , defense , map-based-cloning , chloroplast-development , chlorophyll
Literature:
- Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice . DOI: 10.3390/plants12020403 ; PMID: 36679117
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os02g07230.1
ACATTATCCTCATCCATCCCAACACCCAACCCAAGACAGCATAAACACACCCCAGCCCAGCTCGACTAGAATACGAGAGAAAAATCCCATCTTTGGTCTCCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTCTGAAATTGTTGATTGTTGTACTTT - >LOC_Os02g07230.2
ACATTATCCTCATCCATCCCAACACCCAACCCAAGACAGCATAAACACACCCCAGCCCAGCTCGACTAGAATACGAGAGAAAAATCCCATCTTTGGTCTCCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTCTGAAATTGTTGATTGTTGTACTTT - >LOC_Os02g07230.3
ACATTATCCTCATCCATCCCAACACCCAACCCAAGACAGCATAAACACACCCCAGCCCAGCTCGACTAGAATACGAGAGAAAAATCCCATCTTTGGTCTCCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTCTGAAATTGTTGATTGTTGTACTTT
CDS Sequence
- >LOC_Os02g07230.1
ATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGA - >LOC_Os02g07230.2
ATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGA - >LOC_Os02g07230.3
ATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGA
Protein Sequence
- >LOC_Os02g07230.1
MPPPPRCAATTAHHSLLGSPTCLARPRRRCCPVRAAVAVQAEAQAKVSLIRIGTRGSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKEIDDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVGSASLRRQSQILYKYPSLKVVNFRGNVQTRLRKLKEGDVHATLLALAGLKRLNMAETATSVLSVDEMLPAVAQGAIGIACRSSDDTMMNYLSSLNHEDTRLAVACEREFLSVLDGNCRTPIAAYASRDKDGNCSFRGLLASPDGSTVYETSRTGPYDFDIMVEMGKDAGHELKAKAGPGFFDSLQ* - >LOC_Os02g07230.2
MPPPPRCAATTAHHSLLGSPTCLARPRRRCCPVRAAVAVQAEAQAKVSLIRIGTRGSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKEIDDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVGSASLRRQSQILYKYPSLKVVNFRGNVQTRLRKLKEGDVHATLLALAGLKRLNMAETATSVLSVDEMLPAVAQGAIGIACRSSDDTMMNYLSSLNHEDTRLAVACEREFLSVLDGNCRTPIAAYASRDKDGNCSFRGLLASPDGSTVYETSRTGPYDFDIMVEMGKDAGHELKAKAGPGFFDSLQ* - >LOC_Os02g07230.3
MPPPPRCAATTAHHSLLGSPTCLARPRRRCCPVRAAVAVQAEAQAKVSLIRIGTRGSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKEIDDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVGSASLRRQSQILYKYPSLKVVNFRGNVQTRLRKLKEGDVHATLLALAGLKRLNMAETATSVLSVDEMLPAVAQGAIGIACRSSDDTMMNYLSSLNHEDTRLAVACEREFLSVLDGNCRTPIAAYASRDKDGNCSFRGLLASPDGSTVYETSRTGPYDFDIMVEMGKDAGHELKAKAGPGFFDSLQ*