Gene Details:
- MSU gene ID: LOC_Os02g05890
- RAPdb gene ID: Os02g0152900
- Gene Symbol: YL1 YS83
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice.
- The YL1 mutation showed reduced chlorophyll contents, abnormal chloroplast morphology, and decreased photochemical efficiency.
- Moreover, YL1 deficiency disrupts the expression of genes associated with chloroplast development and photosynthesis.
- Map-based cloning and characterization of the novel yellow-green leaf gene YS83 in rice (Oryza sativa).
- Taken together, we successfully identified a novel yellow-green leaf gene YS83.
- Gene YS83 was expressed in a wide range of tissues, and its encoded protein was targeted to the chloroplast.
- 6%, respectively, meanwhile its seed setting rate and 1000-grain weight (seed size) were not significantly affected in the mutant, so leaf-color mutant gene YS83 could be used as a trait marker gene in commercial hybrid rice production.
- Map-based cloning and sequencing analysis suggested that the candidate gene was YS83 (LOC_Os02g05890) encoding a protein containing 165 amino acid residues.
Function-related keywords:
- chloroplast , development , photosynthesis , chloroplast-development , leaf , seed , map-based-cloning , seed-size , grain-weight
Literature:
- A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice . DOI: 10.1038/srep32295 ; PMID: 27585744
- Map-based cloning and characterization of the novel yellow-green leaf gene ys83 in rice (Oryza sativa) . DOI: 10.1016/j.plaphy.2016.11.007 ; PMID: 27875742
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os02g05890.1
AGCCGCATGTCACTGCCACTCTGCACTCTTCTCTCATCCAAAACCCCAATTTCCCACCCAAATCTATCTCTTCTCTCATCTTCTTCTCTCCTGCGGATTTGCAAATTACACACTTCTGCAAGCTAAAAAATCCAGTTTTCTTGCTCAGGCTAGTGCCTGGTTGTATCTACAGCTCAGCTCAGAAAGAAAGGAGTGGTTTTTGAGGAGTGGTTTTTGTCTACACAGCTGCTGCATATCATGCCTCCACTTGCCACAATGTCATCGCCAGGTTCGCTTCTTCTGTTGACCCCCGCTGTGTACCAGGGGATTGGGAGAAATCGTGGAGGACAAAGCCAGGAAGGACAATCTATCTCGTCTTCACGATCTCTCAAGACTAAACTCAGCGTTTCTGCCAGAGCAGTTTCTTCATGCGAAGCATCCATGAGAATAACATGTTGCGCAAACCAGACACAGACTGCACGACGCAAATCTTTCTCTGGACCTACCTCACCGCCATCAGGGTCAGTTAAAGAGAAAGTGAGGAGTCCAAAGCTTGACGATGGAGGCACCGGCTTCCCGCCATTCCGGTTCGGTGGAGGAGGAGGAGGTGGAGGTGGAGGCGGCAGCAACTCTGCCGGTGGATTCATCCTGTTCGTGATCGTTTTGCTTCTTGATTACCTGAGGGAGTTTGAGAGGAACCTGCAGAATGGAACAAGGAGGGGCAGTGACTATGACAATGGGCTCGCTCCCCAATAGTTGGTTTGTTTCATAGGACACTTTAGCGACGATCCGAAATGCAAGTGGGCTGACCCGTAAACCCACTTATAAATCATTTAAGCGGGTCGATCCGTGGCTGGCCACTGGCCCATTTGCATCCTTATCTGAAACTCCTTTTCTGGAAATGTGTCAAGTGAGAATTGTGCCTGAGAAATGGTAATGGAGTGTAGCAGCCTTCTGGAAAGAAATGGTAATGGCATGTAGAAAGCTGAGACTGGTGTATCAAAGGCCAATGACAATAGCTACATGATATTTGAAGGGCCTTGATGAGGCAAATGAGTGACAATGGACCAGGTGTTTAAAAATGTGAATTTTTTGTTGAGATTGTTGATTGGATATGTTGCGAGAAGTGTTTGGAAATTTCAATAGAACTATTGCGGGCTCAATACTGCATAACTATATGTTGCATACAACAGTGACATTTCACATTTGTTTGCATGAAAAATCGTTAACATACTGTTGGA
CDS Sequence
- >LOC_Os02g05890.1
ATGCCTCCACTTGCCACAATGTCATCGCCAGGTTCGCTTCTTCTGTTGACCCCCGCTGTGTACCAGGGGATTGGGAGAAATCGTGGAGGACAAAGCCAGGAAGGACAATCTATCTCGTCTTCACGATCTCTCAAGACTAAACTCAGCGTTTCTGCCAGAGCAGTTTCTTCATGCGAAGCATCCATGAGAATAACATGTTGCGCAAACCAGACACAGACTGCACGACGCAAATCTTTCTCTGGACCTACCTCACCGCCATCAGGGTCAGTTAAAGAGAAAGTGAGGAGTCCAAAGCTTGACGATGGAGGCACCGGCTTCCCGCCATTCCGGTTCGGTGGAGGAGGAGGAGGTGGAGGTGGAGGCGGCAGCAACTCTGCCGGTGGATTCATCCTGTTCGTGATCGTTTTGCTTCTTGATTACCTGAGGGAGTTTGAGAGGAACCTGCAGAATGGAACAAGGAGGGGCAGTGACTATGACAATGGGCTCGCTCCCCAATAG
Protein Sequence
- >LOC_Os02g05890.1
MPPLATMSSPGSLLLLTPAVYQGIGRNRGGQSQEGQSISSSRSLKTKLSVSARAVSSCEASMRITCCANQTQTARRKSFSGPTSPPSGSVKEKVRSPKLDDGGTGFPPFRFGGGGGGGGGGGSNSAGGFILFVIVLLLDYLREFERNLQNGTRRGSDYDNGLAPQ*