Information report for OsSPL3
Gene Details
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Functional Descriptions
- Map-based cloning revealed that lcrn1 is caused by a mutation of a putative transcription factor coding gene OsSPL3 (SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE3).
- Chromatin immunoprecipitation sequencing assays of OsSPL3-binding sites and RNA-sequencing of differentially expressed transcripts in lcrn1 further identified potential direct targets of OsSPL3 in basal nodes, including a MADS-box transcription factor OsMADS50.
Functional Keywords
Literature and News
Gene Resources
- UniProt: A3A2Z8
- EMBL: AP005294, AP005647, AP014958
- AlphaFoldDB: A3A2Z8
- EnsemblPlants: Os02t0139400-02
- Gramene: Os02t0139400-02
- KEGG: osa:9270639
- InterPro: IPR004333, IPR036893, IPR044817
- PANTHER: PTHR31251, PTHR31251:SF74
- SUPFAM: SSF103612
- PROSITE: PS51141
- Gene3D: 4.10.1100.10
- OrthoDB: A3A2Z8
- SWISS-MODEL: A3A2Z8
- eggNOG: ENOG502QTXG
Sequences
cDNA Sequence
- >LOC_Os02g04680.1
GTCTTTCTTATCTATAGTTGCTTTTCTTCATTGTCTTTTGGTTTAAGGTCCTCATTTTCCACCAGCGCTTGCCAGGGAAAGTAATTCTGGAGGAAGACACAGATTCTTGAGGGAAAAGAGGTGCCCCACAGAAAAGAAAGAAAGAAGCTACTTGACTTGACTTGGTATAGGTTCTTTTCCTGCCCCTCTGATTTGATTTGCATATGCTGCTGCCACCATTGCAGTGCTGCTAACATGGAAGAAATAATGCAGCAGCCTTGAGGTCAGGTAGTAGTAGTTCTTGGTGGTGTGGAACTGTGAAAGATCTGAGCTTGTAAAATCTTTCATGGTGGTGAGAAGTGAAAGTGTGAAACTGTGATAAGATTTGAGATTGTGAAATTTTGGGGGTGGTTCTCTTGTCATGATGTATAGTAGGGTCCAGCACTGGACTGGTTGATGTTGTTGGCTTCAAAGGTTAGGGATAGAGAAAGCCTGAAGAGGAGAGGTGTAGTAGGATATAAGATCTGAGAAAGCCAGAGATGAGAGTGAGGAGAAGGCAGTGGTGTGGCCAAGCTTGAATGCTCCAGTGAGGCTGCTTCTCTGGCTGCCAAGCTGATGGACGCGCCGCCATCGCCAGATCGGCTCGCCGGATCAGTGGAGCTCCATGCTTCTCCAGGCTGCTGCTGATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGTTTTTTTTTTTCAGGAGGAATTCATCAGGAATCTGCTGTGCTCCTTTTCTCTGGGAGAGAAGCAAAGAGCAGGTTGGAGCAGCAGCAGCTGGGATCTGTAACTGGCATGGGTTCTTTTGGGATGGACTGGAATCAGAAGAGCTCGGTGTTGTGGGATTGGGAGAATATGCCGCCGATAGGAAATAGCGCGAACGAGAATCCCAAGAATGTGATGCTGGCTGAATCAAAACTTGCAGGTGTTGGGGTTGACATAGGCCATGAATCAGGCCATTCTTCTGGTGGTACTTTCTCTTCTAGCTCAGAGATTGGGTATGGTTCATCCAAGAGTTCCATATCCGCGTCGATCGATTCTCCGTCCAAAGTGGGGAACACCATAGAGCTCAATTTTGCATCTGCGGAAGAGCATGATAAGAACATGGACAAGGGTAAGAGTAAAGTTGATGACACCGGAACTTCTCGATCACCGGTGGTAGCAGCCAATCGTGTAGAGCCCTTGATTGGCCTGAAGCTTGGCAAGAGAACCTATTTTGAAGATGTCTGTGGAGGGCAGAATGTCAAGAGTTCTCCATCTGGTGTGAGTGTGGCTACCCCATCTCCTGGTCTGGCCAAGAAGGTGAAGGTGGCTCAGCAGAACACTCAGAACCCACACTGTCAAGTTGAAGGCTGCAATGTTGATCTCTCTTCTGCTAAACCTTACCATCGAAAGCACCGAGTCTGTGAACCTCACAGCAAGACTCTTAAAGTCATCGTTGCGGGTCTTGAGCGACGCTTTTGCCAACAGTGTAGTCGGTTTCACGGTTTAGCTGAGTTCGACCAGAAAAAACGAAGCTGTCGCAGGCGCCTCCATGATCACAATGCCCGCAGACGGAAGCCACAACCAGAAGCAATTTCCTTAAGTTCGTCGAGGCTCTCTACATTACTCTATGGTGATGCAAGGCAACAGGCAAGTTTTCTATTTGGTCAAGCTCCTTATGGTCAGATGGGAAGCTGTGCAAGTTCTTGGGATAACCCAGTACCAGGAGGCTTCAAATTTACAGCAACAAAAGCTCCTTGGTCAAGGCCAACAATAGCTGCCGGTGTTGATGGGACGCATGTATCTAATCAGCAGGCATCGGGCAATGTACTGCCACATGGAGCACATCATAGTTTTGATGGTCTCATGGCGTTCAAAGAAACCAACGCGAAGGTCCTTAACCAAGGCATGGAAGCTTCTGCTGTCGCTTCCGGCTCCGCTAGAGGCCCAGACTTTGAGCATGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCGCCATTGCCGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGGCTTGTCCCTTGATCAGCAGGCGCAGTTTCAGGCTTTCGACCGCCTTGGCAACGACGACGACGAAGATCATCTCCAGCTCCCAAAGCCTTCCTATGACAACTCCCACTATGATCAGATGAACTGACGATGTTTCAGATGTCGCGCAATCGACATGGCTTCTGCTCTTATCTGAAATTTCTGAAATCTGGAACTGCATTCTTGGTGTTCTGAAGAATAAAGGTGTGCGAGAAACTTGAACTTGAATTGATCTGGTTGTGTTGTACTCTGGTTGTAGCGCTGCCATGAAACATAAACTTAACTTTTGCTTTCCTTTAGTCGCTGTCACTAATCGTGTGCTTGAATAATTTCATTCTGGTGATACTTTGTATCAGAATTGCTTCAGCAAGTGATCATGGTTTCAGATTCTTGATTTCT - >LOC_Os02g04680.2
GTCTTTCTTATCTATAGTTGCTTTTCTTCATTGTCTTTTGGTTTAAGGTCCTCATTTTCCACCAGCGCTTGCCAGGGAAAGTAATTCTGGAGGAAGACACAGATTCTTGAGGGAAAAGAGGTGCCCCACAGAAAAGAAAGAAAGAAGCTACTTGACTTGACTTGGTATAGGTTCTTTTCCTGCCCCTCTGATTTGATTTGCATATGCTGCTGCCACCATTGCAGTGCTGCTAACATGGAAGAAATAATGCAGCAGCCTTGAGGTCAGGTAGTAGTAGTTCTTGGTGGTGTGGAACTGTGAAAGATCTGAGCTTGTAAAATCTTTCATGGTGGTGAGAAGTGAAAGTGTGAAACTGTGATAAGATTTGAGATTGTGAAATTTTGGGGGTGGTTCTCTTGTCATGATGTATAGTAGGGTCCAGCACTGGACTGGTTGATGTTGTTGGCTTCAAAGGTTAGGGATAGAGAAAGCCTGAAGAGGAGAGGTGTAGTAGGATATAAGATCTGAGAAAGCCAGAGATGAGAGTGAGGAGAAGGCAGTGGTGTGGCCAAGCTTGAATGCTCCAGTGAGGCTGCTTCTCTGGCTGCCAAGCTGATGGACGCGCCGCCATCGCCAGATCGGCTCGCCGGATCAGTGGAGCTCCATGCTTCTCCAGGCTGCTGCTGATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGTTTTTTTTTTTCAGGAGGAATTCATCAGGAATCTGCTGTGCTCCTTTTCTCTGGGAGAGAAGCAAAGAGCAGGTTGGAGCAGCAGCAGCTGGGATCTGTAACTGGCATGGGTTCTTTTGGGATGGACTGGAATCAGAAGAGCTCGGTGTTGTGGGATTGGGAGAATATGCCGCCGATAGGAAATAGCGCGAACGAGAATCCCAAGAATGTGATGCTGGCTGAATCAAAACTTGCAGGTGTTGGGGTTGACATAGGCCATGAATCAGGCCATTCTTCTGGTGGTACTTTCTCTTCTAGCTCAGAGATTGGGTATGGTTCATCCAAGAGTTCCATATCCGCGTCGATCGATTCTCCGTCCAAAGTGGGGAACACCATAGAGCTCAATTTTGCATCTGCGGAAGAGCATGATAAGAACATGGACAAGGGTAAGAGTAAAGTTGATGACACCGGAACTTCTCGATCACCGGTGGTAGCAGCCAATCGTGTAGAGCCCTTGATTGGCCTGAAGCTTGGCAAGAGAACCTATTTTGAAGATGTCTGTGGAGGGCAGAATGTCAAGAGTTCTCCATCTGGTGTGAGTGTGGCTACCCCATCTCCTGGTCTGGCCAAGAAGGTGAAGGTGGCTCAGCAGAACACTCAGAACCCACACTGTCAAGTTGAAGGCTGCAATGTTGATCTCTCTTCTGCTAAACCTTACCATCGAAAGCACCGAGTCTGTGAACCTCACAGCAAGACTCTTAAAGTCATCGTTGCGGGTCTTGAGCGACGCTTTTGCCAACAGTGTAGTCGGTTTCACGGTTTAGCTGAGTTCGACCAGAAAAAACGAAGCTGTCGCAGGCGCCTCCATGATCACAATGCCCGCAGACGGAAGCCACAACCAGAAGCAATTTCCTTAAGTTCGTCGAGGCTCTCTACATTACTCTATGGTGATGCAAGGCAACAGGCAAGTTTTCTATTTGGTCAAGCTCCTTATGGTCAGATGGGAAGCTGTGCAAGTTCTTGGGATAACCCAGTACCAGGAGGCTTCAAATTTACAGCAACAAAAGCTCCTTGGTCAAGGCCAACAATAGCTGCCGGTGTTGATGGGACGCATGTATCTAATCAGCAGGCATCGGGCAATGTACTGCCACATGGAGCACATCATAGTTTTGATGGTCTCATGGCGTTCAAAGAAACCAACGCGAAGGTCCTTAACCAAGGCATGGAAGCTTCTGCTGTCGCTTCCGGCTCCGCTAGAGGCCCAGACTTTGAGCATGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCGCCATTGCCGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGGCTTGTCCCTTGATCAGCAGGCGCAGTTTCAGGCTTTCGACCGCCTTGGCAACGACGACGACGAAGATCATCTCCAGCTCCCAAAGCCTTCCTATGACAACTCCCACTATGATCAGATGAACTGACGATGTTTCAGATGTCGCGCAATCGACATGGCTTCTGCTCTTATCTGAAATTTCTGAAATCTGGAACTGCATTCTTGGTGTTCTGAAGAATAAAGGTGTGCGAGAAACTTGAACTTGAATTGATCTGGTTGTGTTGTACTCTGGTTGTAGCGCTGCCATGAAACATAAACTTAACTTTTGCTTTCCTTTAGTCGCTGTCACTAATCGTGTGCTTGAATAATTTCATTCTGGTGATACTTTGTATCAGAATTGCTTCAGCAAGTGATCATGGTTTCAGATTCTTGATTTCT
CDS Sequence
- >LOC_Os02g04680.1
ATGGGTTCTTTTGGGATGGACTGGAATCAGAAGAGCTCGGTGTTGTGGGATTGGGAGAATATGCCGCCGATAGGAAATAGCGCGAACGAGAATCCCAAGAATGTGATGCTGGCTGAATCAAAACTTGCAGGTGTTGGGGTTGACATAGGCCATGAATCAGGCCATTCTTCTGGTGGTACTTTCTCTTCTAGCTCAGAGATTGGGTATGGTTCATCCAAGAGTTCCATATCCGCGTCGATCGATTCTCCGTCCAAAGTGGGGAACACCATAGAGCTCAATTTTGCATCTGCGGAAGAGCATGATAAGAACATGGACAAGGGTAAGAGTAAAGTTGATGACACCGGAACTTCTCGATCACCGGTGGTAGCAGCCAATCGTGTAGAGCCCTTGATTGGCCTGAAGCTTGGCAAGAGAACCTATTTTGAAGATGTCTGTGGAGGGCAGAATGTCAAGAGTTCTCCATCTGGTGTGAGTGTGGCTACCCCATCTCCTGGTCTGGCCAAGAAGGTGAAGGTGGCTCAGCAGAACACTCAGAACCCACACTGTCAAGTTGAAGGCTGCAATGTTGATCTCTCTTCTGCTAAACCTTACCATCGAAAGCACCGAGTCTGTGAACCTCACAGCAAGACTCTTAAAGTCATCGTTGCGGGTCTTGAGCGACGCTTTTGCCAACAGTGTAGTCGGTTTCACGGTTTAGCTGAGTTCGACCAGAAAAAACGAAGCTGTCGCAGGCGCCTCCATGATCACAATGCCCGCAGACGGAAGCCACAACCAGAAGCAATTTCCTTAAGTTCGTCGAGGCTCTCTACATTACTCTATGGTGATGCAAGGCAACAGGCAAGTTTTCTATTTGGTCAAGCTCCTTATGGTCAGATGGGAAGCTGTGCAAGTTCTTGGGATAACCCAGTACCAGGAGGCTTCAAATTTACAGCAACAAAAGCTCCTTGGTCAAGGCCAACAATAGCTGCCGGTGTTGATGGGACGCATGTATCTAATCAGCAGGCATCGGGCAATGTACTGCCACATGGAGCACATCATAGTTTTGATGGTCTCATGGCGTTCAAAGAAACCAACGCGAAGGTCCTTAACCAAGGCATGGAAGCTTCTGCTGTCGCTTCCGGCTCCGCTAGAGGCCCAGACTTTGAGCATGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCGCCATTGCCGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGGCTTGTCCCTTGATCAGCAGGCGCAGTTTCAGGCTTTCGACCGCCTTGGCAACGACGACGACGAAGATCATCTCCAGCTCCCAAAGCCTTCCTATGACAACTCCCACTATGATCAGATGAACTGA - >LOC_Os02g04680.2
ATGGGTTCTTTTGGGATGGACTGGAATCAGAAGAGCTCGGTGTTGTGGGATTGGGAGAATATGCCGCCGATAGGAAATAGCGCGAACGAGAATCCCAAGAATGTGATGCTGGCTGAATCAAAACTTGCAGGTGTTGGGGTTGACATAGGCCATGAATCAGGCCATTCTTCTGGTGGTACTTTCTCTTCTAGCTCAGAGATTGGGTATGGTTCATCCAAGAGTTCCATATCCGCGTCGATCGATTCTCCGTCCAAAGTGGGGAACACCATAGAGCTCAATTTTGCATCTGCGGAAGAGCATGATAAGAACATGGACAAGGGTAAGAGTAAAGTTGATGACACCGGAACTTCTCGATCACCGGTGGTAGCAGCCAATCGTGTAGAGCCCTTGATTGGCCTGAAGCTTGGCAAGAGAACCTATTTTGAAGATGTCTGTGGAGGGCAGAATGTCAAGAGTTCTCCATCTGGTGTGAGTGTGGCTACCCCATCTCCTGGTCTGGCCAAGAAGGTGAAGGTGGCTCAGCAGAACACTCAGAACCCACACTGTCAAGTTGAAGGCTGCAATGTTGATCTCTCTTCTGCTAAACCTTACCATCGAAAGCACCGAGTCTGTGAACCTCACAGCAAGACTCTTAAAGTCATCGTTGCGGGTCTTGAGCGACGCTTTTGCCAACAGTGTAGTCGGTTTCACGGTTTAGCTGAGTTCGACCAGAAAAAACGAAGCTGTCGCAGGCGCCTCCATGATCACAATGCCCGCAGACGGAAGCCACAACCAGAAGCAATTTCCTTAAGTTCGTCGAGGCTCTCTACATTACTCTATGGTGATGCAAGGCAACAGGCAAGTTTTCTATTTGGTCAAGCTCCTTATGGTCAGATGGGAAGCTGTGCAAGTTCTTGGGATAACCCAGTACCAGGAGGCTTCAAATTTACAGCAACAAAAGCTCCTTGGTCAAGGCCAACAATAGCTGCCGGTGTTGATGGGACGCATGTATCTAATCAGCAGGCATCGGGCAATGTACTGCCACATGGAGCACATCATAGTTTTGATGGTCTCATGGCGTTCAAAGAAACCAACGCGAAGGTCCTTAACCAAGGCATGGAAGCTTCTGCTGTCGCTTCCGGCTCCGCTAGAGGCCCAGACTTTGAGCATGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCGCCATTGCCGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGGCTTGTCCCTTGATCAGCAGGCGCAGTTTCAGGCTTTCGACCGCCTTGGCAACGACGACGACGAAGATCATCTCCAGCTCCCAAAGCCTTCCTATGACAACTCCCACTATGATCAGATGAACTGA
Protein Sequence
- >LOC_Os02g04680.1
MGSFGMDWNQKSSVLWDWENMPPIGNSANENPKNVMLAESKLAGVGVDIGHESGHSSGGTFSSSSEIGYGSSKSSISASIDSPSKVGNTIELNFASAEEHDKNMDKGKSKVDDTGTSRSPVVAANRVEPLIGLKLGKRTYFEDVCGGQNVKSSPSGVSVATPSPGLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLSTLLYGDARQQASFLFGQAPYGQMGSCASSWDNPVPGGFKFTATKAPWSRPTIAAGVDGTHVSNQQASGNVLPHGAHHSFDGLMAFKETNAKVLNQGMEASAVASGSARGPDFEHALSLLSIDSVGAANLQPGSQIHPGVTAIAGTSNPVMMPSPAIWQGGLSLDQQAQFQAFDRLGNDDDEDHLQLPKPSYDNSHYDQMN* - >LOC_Os02g04680.2
MGSFGMDWNQKSSVLWDWENMPPIGNSANENPKNVMLAESKLAGVGVDIGHESGHSSGGTFSSSSEIGYGSSKSSISASIDSPSKVGNTIELNFASAEEHDKNMDKGKSKVDDTGTSRSPVVAANRVEPLIGLKLGKRTYFEDVCGGQNVKSSPSGVSVATPSPGLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLSTLLYGDARQQASFLFGQAPYGQMGSCASSWDNPVPGGFKFTATKAPWSRPTIAAGVDGTHVSNQQASGNVLPHGAHHSFDGLMAFKETNAKVLNQGMEASAVASGSARGPDFEHALSLLSIDSVGAANLQPGSQIHPGVTAIAGTSNPVMMPSPAIWQGGLSLDQQAQFQAFDRLGNDDDEDHLQLPKPSYDNSHYDQMN*