Gene Details:
- MSU gene ID: LOC_Os02g04680
- RAPdb gene ID: Os02g0139400
- Gene Symbol: OsSPL3
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Map-based cloning revealed that lcrn1 is caused by a mutation of a putative transcription factor coding gene OsSPL3 (SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE3).
- Chromatin immunoprecipitation sequencing assays of OsSPL3-binding sites and RNA-sequencing of differentially expressed transcripts in lcrn1 further identified potential direct targets of OsSPL3 in basal nodes, including a MADS-box transcription factor OsMADS50.
Function-related keywords:
Literature:
- OsSPL3, an SBP-Domain Protein, Regulates Crown Root Development in Rice . DOI: 10.1105/tpc.19.00038 ; PMID: 30940685
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os02g04680.1
GTCTTTCTTATCTATAGTTGCTTTTCTTCATTGTCTTTTGGTTTAAGGTCCTCATTTTCCACCAGCGCTTGCCAGGGAAAGTAATTCTGGAGGAAGACACAGATTCTTGAGGGAAAAGAGGTGCCCCACAGAAAAGAAAGAAAGAAGCTACTTGACTTGACTTGGTATAGGTTCTTTTCCTGCCCCTCTGATTTGATTTGCATATGCTGCTGCCACCATTGCAGTGCTGCTAACATGGAAGAAATAATGCAGCAGCCTTGAGGTCAGGTAGTAGTAGTTCTTGGTGGTGTGGAACTGTGAAAGATCTGAGCTTGTAAAATCTTTCATGGTGGTGAGAAGTGAAAGTGTGAAACTGTGATAAGATTTGAGATTGTGAAATTTTGGGGGTGGTTCTCTTGTCATGATGTATAGTAGGGTCCAGCACTGGACTGGTTGATGTTGTTGGCTTCAAAGGTTAGGGATAGAGAAAGCCTGAAGAGGAGAGGTGTAGTAGGATATAAGATCTGAGAAAGCCAGAGATGAGAGTGAGGAGAAGGCAGTGGTGTGGCCAAGCTTGAATGCTCCAGTGAGGCTGCTTCTCTGGCTGCCAAGCTGATGGACGCGCCGCCATCGCCAGATCGGCTCGCCGGATCAGTGGAGCTCCATGCTTCTCCAGGCTGCTGCTGATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGTTTTTTTTTTTCAGGAGGAATTCATCAGGAATCTGCTGTGCTCCTTTTCTCTGGGAGAGAAGCAAAGAGCAGGTTGGAGCAGCAGCAGCTGGGATCTGTAACTGGCATGGGTTCTTTTGGGATGGACTGGAATCAGAAGAGCTCGGTGTTGTGGGATTGGGAGAATATGCCGCCGATAGGAAATAGCGCGAACGAGAATCCCAAGAATGTGATGCTGGCTGAATCAAAACTTGCAGGTGTTGGGGTTGACATAGGCCATGAATCAGGCCATTCTTCTGGTGGTACTTTCTCTTCTAGCTCAGAGATTGGGTATGGTTCATCCAAGAGTTCCATATCCGCGTCGATCGATTCTCCGTCCAAAGTGGGGAACACCATAGAGCTCAATTTTGCATCTGCGGAAGAGCATGATAAGAACATGGACAAGGGTAAGAGTAAAGTTGATGACACCGGAACTTCTCGATCACCGGTGGTAGCAGCCAATCGTGTAGAGCCCTTGATTGGCCTGAAGCTTGGCAAGAGAACCTATTTTGAAGATGTCTGTGGAGGGCAGAATGTCAAGAGTTCTCCATCTGGTGTGAGTGTGGCTACCCCATCTCCTGGTCTGGCCAAGAAGGTGAAGGTGGCTCAGCAGAACACTCAGAACCCACACTGTCAAGTTGAAGGCTGCAATGTTGATCTCTCTTCTGCTAAACCTTACCATCGAAAGCACCGAGTCTGTGAACCTCACAGCAAGACTCTTAAAGTCATCGTTGCGGGTCTTGAGCGACGCTTTTGCCAACAGTGTAGTCGGTTTCACGGTTTAGCTGAGTTCGACCAGAAAAAACGAAGCTGTCGCAGGCGCCTCCATGATCACAATGCCCGCAGACGGAAGCCACAACCAGAAGCAATTTCCTTAAGTTCGTCGAGGCTCTCTACATTACTCTATGGTGATGCAAGGCAACAGGCAAGTTTTCTATTTGGTCAAGCTCCTTATGGTCAGATGGGAAGCTGTGCAAGTTCTTGGGATAACCCAGTACCAGGAGGCTTCAAATTTACAGCAACAAAAGCTCCTTGGTCAAGGCCAACAATAGCTGCCGGTGTTGATGGGACGCATGTATCTAATCAGCAGGCATCGGGCAATGTACTGCCACATGGAGCACATCATAGTTTTGATGGTCTCATGGCGTTCAAAGAAACCAACGCGAAGGTCCTTAACCAAGGCATGGAAGCTTCTGCTGTCGCTTCCGGCTCCGCTAGAGGCCCAGACTTTGAGCATGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCGCCATTGCCGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGGCTTGTCCCTTGATCAGCAGGCGCAGTTTCAGGCTTTCGACCGCCTTGGCAACGACGACGACGAAGATCATCTCCAGCTCCCAAAGCCTTCCTATGACAACTCCCACTATGATCAGATGAACTGACGATGTTTCAGATGTCGCGCAATCGACATGGCTTCTGCTCTTATCTGAAATTTCTGAAATCTGGAACTGCATTCTTGGTGTTCTGAAGAATAAAGGTGTGCGAGAAACTTGAACTTGAATTGATCTGGTTGTGTTGTACTCTGGTTGTAGCGCTGCCATGAAACATAAACTTAACTTTTGCTTTCCTTTAGTCGCTGTCACTAATCGTGTGCTTGAATAATTTCATTCTGGTGATACTTTGTATCAGAATTGCTTCAGCAAGTGATCATGGTTTCAGATTCTTGATTTCT - >LOC_Os02g04680.2
GTCTTTCTTATCTATAGTTGCTTTTCTTCATTGTCTTTTGGTTTAAGGTCCTCATTTTCCACCAGCGCTTGCCAGGGAAAGTAATTCTGGAGGAAGACACAGATTCTTGAGGGAAAAGAGGTGCCCCACAGAAAAGAAAGAAAGAAGCTACTTGACTTGACTTGGTATAGGTTCTTTTCCTGCCCCTCTGATTTGATTTGCATATGCTGCTGCCACCATTGCAGTGCTGCTAACATGGAAGAAATAATGCAGCAGCCTTGAGGTCAGGTAGTAGTAGTTCTTGGTGGTGTGGAACTGTGAAAGATCTGAGCTTGTAAAATCTTTCATGGTGGTGAGAAGTGAAAGTGTGAAACTGTGATAAGATTTGAGATTGTGAAATTTTGGGGGTGGTTCTCTTGTCATGATGTATAGTAGGGTCCAGCACTGGACTGGTTGATGTTGTTGGCTTCAAAGGTTAGGGATAGAGAAAGCCTGAAGAGGAGAGGTGTAGTAGGATATAAGATCTGAGAAAGCCAGAGATGAGAGTGAGGAGAAGGCAGTGGTGTGGCCAAGCTTGAATGCTCCAGTGAGGCTGCTTCTCTGGCTGCCAAGCTGATGGACGCGCCGCCATCGCCAGATCGGCTCGCCGGATCAGTGGAGCTCCATGCTTCTCCAGGCTGCTGCTGATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGTTTTTTTTTTTCAGGAGGAATTCATCAGGAATCTGCTGTGCTCCTTTTCTCTGGGAGAGAAGCAAAGAGCAGGTTGGAGCAGCAGCAGCTGGGATCTGTAACTGGCATGGGTTCTTTTGGGATGGACTGGAATCAGAAGAGCTCGGTGTTGTGGGATTGGGAGAATATGCCGCCGATAGGAAATAGCGCGAACGAGAATCCCAAGAATGTGATGCTGGCTGAATCAAAACTTGCAGGTGTTGGGGTTGACATAGGCCATGAATCAGGCCATTCTTCTGGTGGTACTTTCTCTTCTAGCTCAGAGATTGGGTATGGTTCATCCAAGAGTTCCATATCCGCGTCGATCGATTCTCCGTCCAAAGTGGGGAACACCATAGAGCTCAATTTTGCATCTGCGGAAGAGCATGATAAGAACATGGACAAGGGTAAGAGTAAAGTTGATGACACCGGAACTTCTCGATCACCGGTGGTAGCAGCCAATCGTGTAGAGCCCTTGATTGGCCTGAAGCTTGGCAAGAGAACCTATTTTGAAGATGTCTGTGGAGGGCAGAATGTCAAGAGTTCTCCATCTGGTGTGAGTGTGGCTACCCCATCTCCTGGTCTGGCCAAGAAGGTGAAGGTGGCTCAGCAGAACACTCAGAACCCACACTGTCAAGTTGAAGGCTGCAATGTTGATCTCTCTTCTGCTAAACCTTACCATCGAAAGCACCGAGTCTGTGAACCTCACAGCAAGACTCTTAAAGTCATCGTTGCGGGTCTTGAGCGACGCTTTTGCCAACAGTGTAGTCGGTTTCACGGTTTAGCTGAGTTCGACCAGAAAAAACGAAGCTGTCGCAGGCGCCTCCATGATCACAATGCCCGCAGACGGAAGCCACAACCAGAAGCAATTTCCTTAAGTTCGTCGAGGCTCTCTACATTACTCTATGGTGATGCAAGGCAACAGGCAAGTTTTCTATTTGGTCAAGCTCCTTATGGTCAGATGGGAAGCTGTGCAAGTTCTTGGGATAACCCAGTACCAGGAGGCTTCAAATTTACAGCAACAAAAGCTCCTTGGTCAAGGCCAACAATAGCTGCCGGTGTTGATGGGACGCATGTATCTAATCAGCAGGCATCGGGCAATGTACTGCCACATGGAGCACATCATAGTTTTGATGGTCTCATGGCGTTCAAAGAAACCAACGCGAAGGTCCTTAACCAAGGCATGGAAGCTTCTGCTGTCGCTTCCGGCTCCGCTAGAGGCCCAGACTTTGAGCATGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCGCCATTGCCGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGGCTTGTCCCTTGATCAGCAGGCGCAGTTTCAGGCTTTCGACCGCCTTGGCAACGACGACGACGAAGATCATCTCCAGCTCCCAAAGCCTTCCTATGACAACTCCCACTATGATCAGATGAACTGACGATGTTTCAGATGTCGCGCAATCGACATGGCTTCTGCTCTTATCTGAAATTTCTGAAATCTGGAACTGCATTCTTGGTGTTCTGAAGAATAAAGGTGTGCGAGAAACTTGAACTTGAATTGATCTGGTTGTGTTGTACTCTGGTTGTAGCGCTGCCATGAAACATAAACTTAACTTTTGCTTTCCTTTAGTCGCTGTCACTAATCGTGTGCTTGAATAATTTCATTCTGGTGATACTTTGTATCAGAATTGCTTCAGCAAGTGATCATGGTTTCAGATTCTTGATTTCT
CDS Sequence
- >LOC_Os02g04680.1
ATGGGTTCTTTTGGGATGGACTGGAATCAGAAGAGCTCGGTGTTGTGGGATTGGGAGAATATGCCGCCGATAGGAAATAGCGCGAACGAGAATCCCAAGAATGTGATGCTGGCTGAATCAAAACTTGCAGGTGTTGGGGTTGACATAGGCCATGAATCAGGCCATTCTTCTGGTGGTACTTTCTCTTCTAGCTCAGAGATTGGGTATGGTTCATCCAAGAGTTCCATATCCGCGTCGATCGATTCTCCGTCCAAAGTGGGGAACACCATAGAGCTCAATTTTGCATCTGCGGAAGAGCATGATAAGAACATGGACAAGGGTAAGAGTAAAGTTGATGACACCGGAACTTCTCGATCACCGGTGGTAGCAGCCAATCGTGTAGAGCCCTTGATTGGCCTGAAGCTTGGCAAGAGAACCTATTTTGAAGATGTCTGTGGAGGGCAGAATGTCAAGAGTTCTCCATCTGGTGTGAGTGTGGCTACCCCATCTCCTGGTCTGGCCAAGAAGGTGAAGGTGGCTCAGCAGAACACTCAGAACCCACACTGTCAAGTTGAAGGCTGCAATGTTGATCTCTCTTCTGCTAAACCTTACCATCGAAAGCACCGAGTCTGTGAACCTCACAGCAAGACTCTTAAAGTCATCGTTGCGGGTCTTGAGCGACGCTTTTGCCAACAGTGTAGTCGGTTTCACGGTTTAGCTGAGTTCGACCAGAAAAAACGAAGCTGTCGCAGGCGCCTCCATGATCACAATGCCCGCAGACGGAAGCCACAACCAGAAGCAATTTCCTTAAGTTCGTCGAGGCTCTCTACATTACTCTATGGTGATGCAAGGCAACAGGCAAGTTTTCTATTTGGTCAAGCTCCTTATGGTCAGATGGGAAGCTGTGCAAGTTCTTGGGATAACCCAGTACCAGGAGGCTTCAAATTTACAGCAACAAAAGCTCCTTGGTCAAGGCCAACAATAGCTGCCGGTGTTGATGGGACGCATGTATCTAATCAGCAGGCATCGGGCAATGTACTGCCACATGGAGCACATCATAGTTTTGATGGTCTCATGGCGTTCAAAGAAACCAACGCGAAGGTCCTTAACCAAGGCATGGAAGCTTCTGCTGTCGCTTCCGGCTCCGCTAGAGGCCCAGACTTTGAGCATGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCGCCATTGCCGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGGCTTGTCCCTTGATCAGCAGGCGCAGTTTCAGGCTTTCGACCGCCTTGGCAACGACGACGACGAAGATCATCTCCAGCTCCCAAAGCCTTCCTATGACAACTCCCACTATGATCAGATGAACTGA - >LOC_Os02g04680.2
ATGGGTTCTTTTGGGATGGACTGGAATCAGAAGAGCTCGGTGTTGTGGGATTGGGAGAATATGCCGCCGATAGGAAATAGCGCGAACGAGAATCCCAAGAATGTGATGCTGGCTGAATCAAAACTTGCAGGTGTTGGGGTTGACATAGGCCATGAATCAGGCCATTCTTCTGGTGGTACTTTCTCTTCTAGCTCAGAGATTGGGTATGGTTCATCCAAGAGTTCCATATCCGCGTCGATCGATTCTCCGTCCAAAGTGGGGAACACCATAGAGCTCAATTTTGCATCTGCGGAAGAGCATGATAAGAACATGGACAAGGGTAAGAGTAAAGTTGATGACACCGGAACTTCTCGATCACCGGTGGTAGCAGCCAATCGTGTAGAGCCCTTGATTGGCCTGAAGCTTGGCAAGAGAACCTATTTTGAAGATGTCTGTGGAGGGCAGAATGTCAAGAGTTCTCCATCTGGTGTGAGTGTGGCTACCCCATCTCCTGGTCTGGCCAAGAAGGTGAAGGTGGCTCAGCAGAACACTCAGAACCCACACTGTCAAGTTGAAGGCTGCAATGTTGATCTCTCTTCTGCTAAACCTTACCATCGAAAGCACCGAGTCTGTGAACCTCACAGCAAGACTCTTAAAGTCATCGTTGCGGGTCTTGAGCGACGCTTTTGCCAACAGTGTAGTCGGTTTCACGGTTTAGCTGAGTTCGACCAGAAAAAACGAAGCTGTCGCAGGCGCCTCCATGATCACAATGCCCGCAGACGGAAGCCACAACCAGAAGCAATTTCCTTAAGTTCGTCGAGGCTCTCTACATTACTCTATGGTGATGCAAGGCAACAGGCAAGTTTTCTATTTGGTCAAGCTCCTTATGGTCAGATGGGAAGCTGTGCAAGTTCTTGGGATAACCCAGTACCAGGAGGCTTCAAATTTACAGCAACAAAAGCTCCTTGGTCAAGGCCAACAATAGCTGCCGGTGTTGATGGGACGCATGTATCTAATCAGCAGGCATCGGGCAATGTACTGCCACATGGAGCACATCATAGTTTTGATGGTCTCATGGCGTTCAAAGAAACCAACGCGAAGGTCCTTAACCAAGGCATGGAAGCTTCTGCTGTCGCTTCCGGCTCCGCTAGAGGCCCAGACTTTGAGCATGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCGCCATTGCCGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGGCTTGTCCCTTGATCAGCAGGCGCAGTTTCAGGCTTTCGACCGCCTTGGCAACGACGACGACGAAGATCATCTCCAGCTCCCAAAGCCTTCCTATGACAACTCCCACTATGATCAGATGAACTGA
Protein Sequence
- >LOC_Os02g04680.1
MGSFGMDWNQKSSVLWDWENMPPIGNSANENPKNVMLAESKLAGVGVDIGHESGHSSGGTFSSSSEIGYGSSKSSISASIDSPSKVGNTIELNFASAEEHDKNMDKGKSKVDDTGTSRSPVVAANRVEPLIGLKLGKRTYFEDVCGGQNVKSSPSGVSVATPSPGLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLSTLLYGDARQQASFLFGQAPYGQMGSCASSWDNPVPGGFKFTATKAPWSRPTIAAGVDGTHVSNQQASGNVLPHGAHHSFDGLMAFKETNAKVLNQGMEASAVASGSARGPDFEHALSLLSIDSVGAANLQPGSQIHPGVTAIAGTSNPVMMPSPAIWQGGLSLDQQAQFQAFDRLGNDDDEDHLQLPKPSYDNSHYDQMN* - >LOC_Os02g04680.2
MGSFGMDWNQKSSVLWDWENMPPIGNSANENPKNVMLAESKLAGVGVDIGHESGHSSGGTFSSSSEIGYGSSKSSISASIDSPSKVGNTIELNFASAEEHDKNMDKGKSKVDDTGTSRSPVVAANRVEPLIGLKLGKRTYFEDVCGGQNVKSSPSGVSVATPSPGLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLSTLLYGDARQQASFLFGQAPYGQMGSCASSWDNPVPGGFKFTATKAPWSRPTIAAGVDGTHVSNQQASGNVLPHGAHHSFDGLMAFKETNAKVLNQGMEASAVASGSARGPDFEHALSLLSIDSVGAANLQPGSQIHPGVTAIAGTSNPVMMPSPAIWQGGLSLDQQAQFQAFDRLGNDDDEDHLQLPKPSYDNSHYDQMN*