Gene Details:
- MSU gene ID: LOC_Os02g04160
- RAPdb gene ID: Os02g0134300
- Gene Symbol: OsTEF1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- A T-DNA insertional mutant OsTEF1 of rice gives 60-80% reduced tillering, retarded growth of seminal roots, and sensitivity to salt stress compared to wild type Basmati 370.
- Detailed transcriptomic profiling of OsTEF1 revealed that mutation in the transcription elongation factor differentially regulates the expression of more than 100 genes with known function and finely regulates tillering process in rice by inducing the expression of cytochrome P450.
- Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors.
Function-related keywords:
- growth , tiller , salt-stress , tillering , root , salt , transcription-factor
Literature:
- Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors . DOI: 10.1007/s10142-012-0264-5 ; PMID: 22367482
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os02g04160.1
GGTCGGTCGCGATCATTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACATATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTCTAAAATAGCATCTGAGAGTAGTGACACAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTTGGATAGTGGTGCAGTATAACAGAGTAGGATCATGATGCATCAGCTATTCAACTGTACTGTCCAATTAACATGTCGTCGTGCCTGAACAAACTCTAGTATCTTCGGT - >LOC_Os02g04160.2
GGTCGGTCGCGATCATTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACATATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTCTAAAATAGCATCTGAGAGTAGTGACACAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTTGGATAGTGGTGCAGTATAACAGAGTAGGATCATGATGCATCAGCTATTCAACTGTACTGTCCAATTAACATGTCGTCGTGCCTGAACAAACTCTAGTATCTTCGGT
CDS Sequence
- >LOC_Os02g04160.1
ATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACATATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAG - >LOC_Os02g04160.2
ATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACATATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAG
Protein Sequence
- >LOC_Os02g04160.1
MGKRKSKAKPPPKKRMDKLDTVFCCPFCNHGSSVECRIDLKNLIGEASCRICLETFSTSVNALTEPIDIYSEWIDECERVNNPEEDNANHYEDDNASRYRYDEEE* - >LOC_Os02g04160.2
MGKRKSKAKPPPKKRMDKLDTVFCCPFCNHGSSVECRIDLKNLIGEASCRICLETFSTSVNALTEPIDIYSEWIDECERVNNPEEDNANHYEDDNASRYRYDEEE*