Gene Details:
- MSU gene ID: LOC_Os01g72890
- RAPdb gene ID: Os01g0959000
- Gene Symbol: OsSR45
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Here, we show that OsFKBP20-1b, belonging to the immunophilin family, interacts with the splicing factor OsSR45 in both nuclear speckles and cytoplasmic foci and plays an essential role in post-transcriptional regulation of abiotic stress response.
- OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.
Function-related keywords:
Literature:
- OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice . DOI: 10.1111/tpj.14682 ; PMID: 31925835
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os01g72890.2
CCCCTCCCTCAGACGACCCCCGACCAAAACCCTAGCCCCCAAACCCGCCCATCGGTCGCCTCCGCCGCCGGAGACGATGGCGAAGCCGCGCCGCGGCCGCTCCGCCTCGCGCTCCTCCTCGGGATCCTCCTCTCGCTCGCCGTCCCGCTCCGCCTCCTCGGGCTCCGGCTCCTCCCGGTCGCGCTCCCGCTCCCGCTCCTTCTCGTCGTCGTCGTCCCCTTCACGGAGCCGCTCCCCACCCGCTGCCAAGGCCAGCTCACCTGGGGCACGGAGAGGTCGATCTCCTTCATCCCCTGCTAAGAGAGGATCGCCATCAAAGAAAGGGCGTTCACCATCACCACCACCACCTAAAAAGGCTTCACCTCCTAGGAAAGCATCTCCTGCTCCTGAATCAGTTGTTCTCCACATTGATCATTTGTCCAGGAATGTTAATGAAGCTCATTTGAAAGAGATATTCGGAAACTTTGGTGAAGTGGTTAACGTGGAGCTATCCATGGATCGAATGGTCAACCTTCCTCGTGGGTATGGATATATTGAGTTCAAGAAGAGAACTGATGCTGAGAAAGCTCTTCTTTACATGGACGGCGGTCAAATTGATGGGAATGTTGTGAAGTTGAGATTCACACTTGCACCACGGCAAAGGGCTTCTTCACCAATGAAGGCGCCTCCCCCTCCCCCAAAAAGAGATGTTCCTCATAATGAGAAAGGCGCTCCTAGTGCTGAAAAGGATGTGCAGCAGCGCAGGGAACCATCCCCACGAAGGAAGCCAGCTTCACCTCCACGCAAAAGAACTCCTCCAAACCGAAGGATTGAATCTCCCAGGCGGCAACCTGATCCATCTCCTAGGCGTCGTCCTGATTCTCCACCTATTCGTCGTCGAGCAGATGCTTCGCCTGTCAGGCGTGGTGACACACCTCCTCGTCGGAGACCAGGATCTCCAGTGAGAAGGCGTTCTCCCTCTCCACCACCTAGAAGGCGTAGATCACCAATGCGTCCTTCACCTAGGAGGCTTCGTGGAAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTCATAGCCGTTCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAACGCGAGGACCTCCATTGAGGCGTGGAAGGTCTGATTCATCGTATTCTCGATCACCCAGTCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGAGCCGCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACCTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCGTTCCTGGCAGGTAAAACTTCTTTTGTTTCTTGACTATCACTATCGTTTGCCTGTGCTTGTGTCTTTCTGAGAGCTCAAGCGGTTGGTTTGAGGGGATACAGAGAACTCTGCTTAAAAGCTTTCCAGTTAATCTAGATTACCAGTGGAGTCTAGTCTGTGATCTGTAGTTGTCTACTCAGACTCTTGTTGGCATTGGTTATGTAGCTCTTCAGTATTATCTGTTCTAACTTCGTGACTCTTGCATTCCGAACCTGAATATTCTGTGGTGACACTTGTTCTTAATACTGTTATCGTTCGAAGAAGTTCCGACTTATGTTTGA - >LOC_Os01g72890.1
CCCCTCCCTCAGACGACCCCCGACCAAAACCCTAGCCCCCAAACCCGCCCATCGGTCGCCTCCGCCGCCGGAGACGATGGCGAAGCCGCGCCGCGGCCGCTCCGCCTCGCGCTCCTCCTCGGGATCCTCCTCTCGCTCGCCGTCCCGCTCCGCCTCCTCGGGCTCCGGCTCCTCCCGGTCGCGCTCCCGCTCCCGCTCCTTCTCGTCGTCGTCGTCCCCTTCACGGAGCCGCTCCCCACCCGCTGCCAAGGCCAGCTCACCTGGGGCACGGAGAGGTCGATCTCCTTCATCCCCTGCTAAGAGAGGATCGCCATCAAAGAAAGGGCGTTCACCATCACCACCACCACCTAAAAAGGCTTCACCTCCTAGGAAAGCATCTCCTGCTCCTGAATCAGTTGTTCTCCACATTGATCATTTGTCCAGGAATGTTAATGAAGCTCATTTGAAAGAGATATTCGGAAACTTTGGTGAAGTGGTTAACGTGGAGCTATCCATGGATCGAATGGTCAACCTTCCTCGTGGGTATGGATATATTGAGTTCAAGAAGAGAACTGATGCTGAGAAAGCTCTTCTTTACATGGACGGCGGTCAAATTGATGGGAATGTTGTGAAGTTGAGATTCACACTTGCACCACGGCAAAGGGCTTCTTCACCAATGAAGGCGCCTCCCCCTCCCCCAAAAAGAGATGTTCCTCATAATGAGAAAGGCGCTCCTAGTGCTGAAAAGGATGTGCAGCAGCGCAGGGAACCATCCCCACGAAGGAAGCCAGCTTCACCTCCACGCAAAAGAACTCCTCCAAACCGAAGGATTGAATCTCCCAGGCGGCAACCTGATCCATCTCCTAGGCGTCGTCCTGATTCTCCACCTATTCGTCGTCGAGCAGATGCTTCGCCTGTCAGGCGTGGTGACACACCTCCTCGTCGGAGACCAGGATCTCCAGTGAGAAGGCGTTCTCCCTCTCCACCACCTAGAAGGCGTAGATCACCAATGCGTCCTTCACCTAGGAGGCTTCGTGGAAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTCATAGCCGTTCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAACGCGAGGACCTCCATTGAGGCGTGGAAGGTCTGATTCATCGTATTCTCGATCACCCAGTCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGAGCCGCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACCTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCGTTCCTGGCAGGTAAAACTTCTTTTGTTTCTTGACTATCACTATCGTTTGCCTGTGCTTGTGTCTTTCTGAGAGCTCAAGCGGTTGGTTTGAGGGGATACAGAGAACTCTGCTTAAAAGCTTTCCAGTTAATCTAGATTACCAGTGGAGTCTAGTCTGTGATCTGTAGTTGTCTACTCAGACTCTTGTTGGCATTGGTTATGTAGCTCTTCAGTATTATCTGTTCTAACTTCGTGACTCTTGCATTCCGAACCTGAATATTCTGTGGTGACACTTGTTCTTAATACTGTTATCGTTCGAAGAAGTTCCGACTTATGTTTGA
CDS Sequence
- >LOC_Os01g72890.2
ATGGCGAAGCCGCGCCGCGGCCGCTCCGCCTCGCGCTCCTCCTCGGGATCCTCCTCTCGCTCGCCGTCCCGCTCCGCCTCCTCGGGCTCCGGCTCCTCCCGGTCGCGCTCCCGCTCCCGCTCCTTCTCGTCGTCGTCGTCCCCTTCACGGAGCCGCTCCCCACCCGCTGCCAAGGCCAGCTCACCTGGGGCACGGAGAGGTCGATCTCCTTCATCCCCTGCTAAGAGAGGATCGCCATCAAAGAAAGGGCGTTCACCATCACCACCACCACCTAAAAAGGCTTCACCTCCTAGGAAAGCATCTCCTGCTCCTGAATCAGTTGTTCTCCACATTGATCATTTGTCCAGGAATGTTAATGAAGCTCATTTGAAAGAGATATTCGGAAACTTTGGTGAAGTGGTTAACGTGGAGCTATCCATGGATCGAATGGTCAACCTTCCTCGTGGGTATGGATATATTGAGTTCAAGAAGAGAACTGATGCTGAGAAAGCTCTTCTTTACATGGACGGCGGTCAAATTGATGGGAATGTTGTGAAGTTGAGATTCACACTTGCACCACGGCAAAGGGCTTCTTCACCAATGAAGGCGCCTCCCCCTCCCCCAAAAAGAGATGTTCCTCATAATGAGAAAGGCGCTCCTAGTGCTGAAAAGGATGTGCAGCAGCGCAGGGAACCATCCCCACGAAGGAAGCCAGCTTCACCTCCACGCAAAAGAACTCCTCCAAACCGAAGGATTGAATCTCCCAGGCGGCAACCTGATCCATCTCCTAGGCGTCGTCCTGATTCTCCACCTATTCGTCGTCGAGCAGATGCTTCGCCTGTCAGGCGTGGTGACACACCTCCTCGTCGGAGACCAGGATCTCCAGTGAGAAGGCGTTCTCCCTCTCCACCACCTAGAAGGCGTAGATCACCAATGCGTCCTTCACCTAGGAGGCTTCGTGGAAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTCATAGCCGTTCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAACGCGAGGACCTCCATTGAGGCGTGGAAGGTCTGATTCATCGTATTCTCGATCACCCAGTCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGAGCCGCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACCTTCCCCGAGGCGCAGGTAG - >LOC_Os01g72890.1
ATGGCGAAGCCGCGCCGCGGCCGCTCCGCCTCGCGCTCCTCCTCGGGATCCTCCTCTCGCTCGCCGTCCCGCTCCGCCTCCTCGGGCTCCGGCTCCTCCCGGTCGCGCTCCCGCTCCCGCTCCTTCTCGTCGTCGTCGTCCCCTTCACGGAGCCGCTCCCCACCCGCTGCCAAGGCCAGCTCACCTGGGGCACGGAGAGGTCGATCTCCTTCATCCCCTGCTAAGAGAGGATCGCCATCAAAGAAAGGGCGTTCACCATCACCACCACCACCTAAAAAGGCTTCACCTCCTAGGAAAGCATCTCCTGCTCCTGAATCAGTTGTTCTCCACATTGATCATTTGTCCAGGAATGTTAATGAAGCTCATTTGAAAGAGATATTCGGAAACTTTGGTGAAGTGGTTAACGTGGAGCTATCCATGGATCGAATGGTCAACCTTCCTCGTGGGTATGGATATATTGAGTTCAAGAAGAGAACTGATGCTGAGAAAGCTCTTCTTTACATGGACGGCGGTCAAATTGATGGGAATGTTGTGAAGTTGAGATTCACACTTGCACCACGGCAAAGGGCTTCTTCACCAATGAAGGCGCCTCCCCCTCCCCCAAAAAGAGATGTTCCTCATAATGAGAAAGGCGCTCCTAGTGCTGAAAAGGATGTGCAGCAGCGCAGGGAACCATCCCCACGAAGGAAGCCAGCTTCACCTCCACGCAAAAGAACTCCTCCAAACCGAAGGATTGAATCTCCCAGGCGGCAACCTGATCCATCTCCTAGGCGTCGTCCTGATTCTCCACCTATTCGTCGTCGAGCAGATGCTTCGCCTGTCAGGCGTGGTGACACACCTCCTCGTCGGAGACCAGGATCTCCAGTGAGAAGGCGTTCTCCCTCTCCACCACCTAGAAGGCGTAGATCACCAATGCGTCCTTCACCTAGGAGGCTTCGTGGAAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTCATAGCCGTTCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAACGCGAGGACCTCCATTGAGGCGTGGAAGGTCTGATTCATCGTATTCTCGATCACCCAGTCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGAGCCGCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACCTTCCCCGAGGCGCAGGTAG
Protein Sequence
- >LOC_Os01g72890.2
MAKPRRGRSASRSSSGSSSRSPSRSASSGSGSSRSRSRSRSFSSSSSPSRSRSPPAAKASSPGARRGRSPSSPAKRGSPSKKGRSPSPPPPKKASPPRKASPAPESVVLHIDHLSRNVNEAHLKEIFGNFGEVVNVELSMDRMVNLPRGYGYIEFKKRTDAEKALLYMDGGQIDGNVVKLRFTLAPRQRASSPMKAPPPPPKRDVPHNEKGAPSAEKDVQQRREPSPRRKPASPPRKRTPPNRRIESPRRQPDPSPRRRPDSPPIRRRADASPVRRGDTPPRRRPGSPVRRRSPSPPPRRRRSPMRPSPRRLRGSPSPRRRSPGPIRRRSPPPPPRRPRSPPGRRLPPPRRHSRSPPPRRPPHSRSRSISPRTRGPPLRRGRSDSSYSRSPSPPRKGPRRVSRSRTPPRHRRGRSISSDSRSSSSPSPRRR* - >LOC_Os01g72890.1
MAKPRRGRSASRSSSGSSSRSPSRSASSGSGSSRSRSRSRSFSSSSSPSRSRSPPAAKASSPGARRGRSPSSPAKRGSPSKKGRSPSPPPPKKASPPRKASPAPESVVLHIDHLSRNVNEAHLKEIFGNFGEVVNVELSMDRMVNLPRGYGYIEFKKRTDAEKALLYMDGGQIDGNVVKLRFTLAPRQRASSPMKAPPPPPKRDVPHNEKGAPSAEKDVQQRREPSPRRKPASPPRKRTPPNRRIESPRRQPDPSPRRRPDSPPIRRRADASPVRRGDTPPRRRPGSPVRRRSPSPPPRRRRSPMRPSPRRLRGSPSPRRRSPGPIRRRSPPPPPRRPRSPPGRRLPPPRRHSRSPPPRRPPHSRSRSISPRTRGPPLRRGRSDSSYSRSPSPPRKGPRRVSRSRTPPRHRRGRSISSDSRSSSSPSPRRR*