Information report for OsCLP
Gene Details
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Functional Descriptions
- These data suggest that OsCLP, which has chitinase activity, may play an important role in plant defenses against pathogens.
- In addition, exogenous treatment with OsCLP affected the growth of the basidiomycete fungus Rhizoctonia solani through degradation of the hyphal cell wall.
- A T-DNA insertion mutant of OsCLP (OsCLP) showed significant retardation of root and shoot growth.
- A comparative proteomic analysis was carried out using root tissue of wild-type and the OsCLP mutant to understand the OsCLP-mediated rice growth retardation.
- Exogenous application of Ca(2+) resulted in successful recovery of both primary and lateral root growth in OsCLP.
- Moreover, overexpression of OsCLP resulted in improved growth with modified seed shape and starch structure; however, the overall yield remained unaffected.
- Taken together, our results highlight the involvement of OsCLP in rice growth by regulating the intracellular calcium concentrations.
- Results obtained revealed that proteins related to glycolysis (phosphoglycerate kinase), stress adaption (chaperonin) and calcium signaling (calreticulin and CDPK1) were differentially regulated in OsCLP roots.
- Fura-2 molecular probe staining, which is an intracellular calcium indicator, and ICP-MS analysis suggested that the intracellular calcium content was significantly lower in roots of OsCLP as compared to the wild-type.
Functional Keywords
Literature and News
- Characterization of a newly identified rice chitinase-like protein (OsCLP) homologous to xylanase inhibitor . DOI: 10.1186/1472-6750-13-4 ; PMID: 23331415
- A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa . DOI: 10.1111/ppl.12579 ; PMID: 28401568
Gene Resources
- UniProt: Q8S1V1
- EMBL: AP003269, AP008207, AP014957
- AlphaFoldDB: Q8S1V1
- EnsemblPlants: Os01t0937050-01
- Gramene: Os01t0937050-01
- KEGG: dosa:Os01g0937050, osa:9267890
- Orthologous matrix: YAVPQVD
- InterPro: IPR001461, IPR021109, IPR032799
- PANTHER: PTHR47965, PTHR47965:SF60
- SUPFAM: SSF50630
- PROSITE: PS51767
- Gene3D: 2.40.70.10
- OrthoDB: Q8S1V1
- SWISS-MODEL: Q8S1V1
- Conserved Domain Database: cd05489
- eggNOG: KOG1339
Sequences
cDNA Sequence
- >LOC_Os01g71080.1
CACAGTGCGTGCTAGCTAGTTTGCCCAGGCTAATAACCAGCAATGTCGCTCCACCTCCTCCTCGCCGTCTCGCTCTGCGTCGCCTTGGCCTCGTCGTTGCCATGGGCAGCAGCTAGTGCCAATGGCAATGGCAATGGCAAGCCGCTTGTCGCGGCCATCACCAAGGACGCGGCGACCTCGCTCTACACCGTCCCCATCAAGGACGGCCGCCCGCTCGTCCTCGACCTCGCCGGCGCGCTCGTCTGGATGTCGTGCGCCGCCGCGCACCCGACGCTGGAGTGCCACCACCACTTCTGCATGCACGCGCACAGCTACCACCCGCCGGGATGCCCCCACAATGGCTATGGCCGCGCCGACGTCGAGGACCCGTTCCGGTGCAAGTGCACCGCCCACCCGTACAACCCCTTCTCCGGCGAGTCGGCGACGGCCGACCTGACGCGGACGAGGCTGTCGGCGAACGCCACCGACGGCAAGAACCCGCTCTACCCGGTGTCGTTCGCCGCCGTCACCTCCTGCGCGCCGGATTCCCTCCTCGCGAAGCTCCCCGCCGGCGCCGTCGGCGTCGCCGGGCTCGCGCGCACCAGGCTCGCGCTGCAGGCGCAGGTGGCGCGGTCGCAGAAGGTCGCCAACAAGTTCGCGCTCTGCCTCCCCAGCGGCGGCGGCGGCGACGGCGTGGCGATCTTCGGCGGCGGCCCGCTCTTCCTCCTCCCGCCGGGGCGTCCCGACGTGGCGGCGACGCTCGCCGGCGAAACTCCCCTCCACCGCAACAAGGATCTCCCCGGATACTTCATCTCGGCGACCAAGATCGCCGTGAACCAGGAGCAGGTGCAGCTCTACACCCAAGAGCCGCTCGTCGTCGAGCTGTGCACGAGGATCCCGTACACGGCGCTCCGGCCGGACGTGTACCGAGCGGTGGTCGACGCGTTCGCCAGGGCCACCGCCGGCCGGAAGCGCGTCACGCCGCCGCCGCCGCCGGCGGCGCCGTTCGAGCTGTGCTACGACTCGCGCGATCTGGGGTCGACGCGGCTGGGCTACGCCGTGCCGCAGATCGACCTGGTGCTGGAGGGCGGCAAGAACTGGACGGTGTTCGGCGGCAACTCGATGGCGCAGGTGAGCGACAACACGGCGTGCCTCGCGGTGGTGAAGGTGAAGGGGGAGAAGGGCAGCCCGCCGCCGCCGGCGGCGATCATCGGAGGGTTCCAGATGGAGAACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGATTCAGCGGCCTGCTCTGGGGGAGGCAGACCACCTGCAGCAACTTCAACTTCACTCTCGCCGCCTAGATCGAGTCGATTCCTCGAGCTCATAGCTTGCATTTGCATCGGAGATGTGCATGCATTTTTTTTTGGCATTATTATTATTATGAGTTGTGATTTGTAACAAGTACATTTCGATGAATAATGGAGAATACCACAGATTTGTTACTGAGAGCCTGAAATCGAAGAGGAATACAGGAAAAAAAAT
CDS Sequence
- >LOC_Os01g71080.1
ATGTCGCTCCACCTCCTCCTCGCCGTCTCGCTCTGCGTCGCCTTGGCCTCGTCGTTGCCATGGGCAGCAGCTAGTGCCAATGGCAATGGCAATGGCAAGCCGCTTGTCGCGGCCATCACCAAGGACGCGGCGACCTCGCTCTACACCGTCCCCATCAAGGACGGCCGCCCGCTCGTCCTCGACCTCGCCGGCGCGCTCGTCTGGATGTCGTGCGCCGCCGCGCACCCGACGCTGGAGTGCCACCACCACTTCTGCATGCACGCGCACAGCTACCACCCGCCGGGATGCCCCCACAATGGCTATGGCCGCGCCGACGTCGAGGACCCGTTCCGGTGCAAGTGCACCGCCCACCCGTACAACCCCTTCTCCGGCGAGTCGGCGACGGCCGACCTGACGCGGACGAGGCTGTCGGCGAACGCCACCGACGGCAAGAACCCGCTCTACCCGGTGTCGTTCGCCGCCGTCACCTCCTGCGCGCCGGATTCCCTCCTCGCGAAGCTCCCCGCCGGCGCCGTCGGCGTCGCCGGGCTCGCGCGCACCAGGCTCGCGCTGCAGGCGCAGGTGGCGCGGTCGCAGAAGGTCGCCAACAAGTTCGCGCTCTGCCTCCCCAGCGGCGGCGGCGGCGACGGCGTGGCGATCTTCGGCGGCGGCCCGCTCTTCCTCCTCCCGCCGGGGCGTCCCGACGTGGCGGCGACGCTCGCCGGCGAAACTCCCCTCCACCGCAACAAGGATCTCCCCGGATACTTCATCTCGGCGACCAAGATCGCCGTGAACCAGGAGCAGGTGCAGCTCTACACCCAAGAGCCGCTCGTCGTCGAGCTGTGCACGAGGATCCCGTACACGGCGCTCCGGCCGGACGTGTACCGAGCGGTGGTCGACGCGTTCGCCAGGGCCACCGCCGGCCGGAAGCGCGTCACGCCGCCGCCGCCGCCGGCGGCGCCGTTCGAGCTGTGCTACGACTCGCGCGATCTGGGGTCGACGCGGCTGGGCTACGCCGTGCCGCAGATCGACCTGGTGCTGGAGGGCGGCAAGAACTGGACGGTGTTCGGCGGCAACTCGATGGCGCAGGTGAGCGACAACACGGCGTGCCTCGCGGTGGTGAAGGTGAAGGGGGAGAAGGGCAGCCCGCCGCCGCCGGCGGCGATCATCGGAGGGTTCCAGATGGAGAACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGATTCAGCGGCCTGCTCTGGGGGAGGCAGACCACCTGCAGCAACTTCAACTTCACTCTCGCCGCCTAG
Protein Sequence
- >LOC_Os01g71080.1
MSLHLLLAVSLCVALASSLPWAAASANGNGNGKPLVAAITKDAATSLYTVPIKDGRPLVLDLAGALVWMSCAAAHPTLECHHHFCMHAHSYHPPGCPHNGYGRADVEDPFRCKCTAHPYNPFSGESATADLTRTRLSANATDGKNPLYPVSFAAVTSCAPDSLLAKLPAGAVGVAGLARTRLALQAQVARSQKVANKFALCLPSGGGGDGVAIFGGGPLFLLPPGRPDVAATLAGETPLHRNKDLPGYFISATKIAVNQEQVQLYTQEPLVVELCTRIPYTALRPDVYRAVVDAFARATAGRKRVTPPPPPAAPFELCYDSRDLGSTRLGYAVPQIDLVLEGGKNWTVFGGNSMAQVSDNTACLAVVKVKGEKGSPPPPAAIIGGFQMENNLVVFDEEKQRLGFSGLLWGRQTTCSNFNFTLAA*