Information report for LC4
Gene Details
|
|
Functional Descriptions
- We show that miR394 and LC4 work, antagonistically, to regulate leaf lamina joint development and rice architecture, by modulating expansion and elongation of adaxial parenchyma cells.
- Suppressed expression of miR394, or enhanced expression of LC4, results in enlarged leaf angles, whereas reducing LC4 expression by CRISPR/Cas9 leads to reduced leaf inclination, suggesting LC4 as candidate for use in rice architecture improvement.
- Rice plants with altered expression of miR394 or LC4 have altered auxin responses, indicating that the miR394-LC4 module mediates auxin effects important for determining rice leaf inclination and architecture.
- LC4 interacts with SKP1, a component of the SCF E3 ubiquitin ligase complex, and transcription of both miR394 and LC4 are regulated by auxin.
Functional Keywords
- leaf , auxin , development , architecture , auxin-response , lamina , Ubiquitin , lamina-joint , leaf-angle
Literature and News
Gene Resources
- UniProt: Q5JJQ2
- EMBL: AK241547, AP014957
- AlphaFoldDB: Q5JJQ2
- EnsemblPlants: Os01t0923900-01
- Gramene: Os01t0923900-01
- KEGG: osa:4327256
- Orthologous matrix: CAEPEGV
- InterPro: IPR001810, IPR011043, IPR015915
- PANTHER: PTHR31672, PTHR31672:SF12
- SUPFAM: SSF50965, SSF81383
- PROSITE: PS50181
- Gene3D: 1.20.1280.50, 2.120.10.80
- OrthoDB: Q5JJQ2
- SWISS-MODEL: Q5JJQ2
- eggNOG: ENOG502QQ35
Sequences
cDNA Sequence
- >LOC_Os01g69940.1
GCAAACCCACCACTTCTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAATATTTTTTGTTGTTGTTCTGGGGGAAGAGGAGGAGGAGGAGAGGGGCGCCGCTGCGGCGGCGGCGGGAGGAGGGAGGATGGGGGAGGTGGCGGCGCTGCGGCAGCTGGTCGGCGAGGTGCAGGAGCTCTGGGACCTCTACGGCGCCAACTCCCACCCCCTCCCAAGGTGGTATTTACTGGACTTTGAGCATGGTTCAATCAAAGATGATCATTGTAGAGCAAGGACTGGATACAACTCAGAATTACTAAAGATCATGGAAGCTAACCAATCTCCTCCTCGCAAGCGCTCACGGAGGGACAAAAACCGTGAGAAAGCACCCAACTCAAACTCAACTGAAGAAATGCAACAGGAGATTTGGAGTGAGTTCCCTGGAGACCTTTTTGAAACCGTTGTTGCAAGACTTCCAGTTGCTGCAATTTTCCGATTTCGCACTGTTTGCCGGAATTGGTATTCTATGTTGGGCTCAGAAAGTTTCTCTCAGCAGTACTCAGAAGTTCCACAGAGGCTGCCATGGTTCTATACAATCACCCATGAGAATGCCAGCAACAATGTAGCGATGTATGACCCTTCGCTGAAAAAATGGCACCACCCATCAGTTCCCCTGGCTCCTGCAAAGATAGTAATTCCAGTGGCATCTGCAGGTGGCCTTGTCTGTTTATTGGATCTTAGCCACAGGAACTTCTACATATGCAATCCGCTAACACAATCACTCAAGGAAATTCCGCGCAGGTCAGTCCAGGCATGGTCAAGAGTGGCAGTAGGGATGGTGATGAACGGAGGAACCTCTAATGAAGGTTACAAAGTAATGTGGTTAGGAAATGATGGGAATTATGAAGTCTATGATTCTATGAAGAATATGTGGTCTTGTCCAGGCACTTTTCCTCCAAGCATCAAACTTCCGCTTGCTCTAAATTTTAGGTCACAGCCTGTGGCGGTTGGCAGCATGCTATACTTCATGTGTGCAGAACCAGAGGGTGTTTTGTCGTATGATGTAAGCACTGGGATATGGAGACAATTCGTCATCCCACTGCCACTTCATCTGACTGACCACACACTTGCCGAGTTCCAGGGAAGGGTTATGCTGGTGGGTCTGCTCTGCAAAAATGCAGCGACATGTGTCTGCATTTGGGAGTTGCAGAAGATGACTCTCCTCTGGAAGGAGGTGGACAGAATGCCAAATATCTGGTGCTTAGAATTCTACGGTAAGCACATGAAGATGACATGCCTGGGCAACAGTGGTTTGCTCATGCTCTCCTTGAAGGCGAAGCGGATGAACCGCCTCGTGACATACAACCTTTTGAACAAGGAGTGGCAGAAGGTTCCTGATTGCATGCTCCCATGCAGCCGCAAAAAGCAGTGGATAGCATGTGGCACAGCATTTGGTCCATGCCCCTCTGCCTTGGCCTGACAGTTTTTTTTCACTTTCTTCACCAAAGGTGGTTGAGATTTCACACATTCCGGATCATTGGCCTATCCTTAGATATTTCCGTCTTACCGTGAGAAGGTTATCTGTCATGTACAAAATCATGTAACCTGTGGTTGTTTTTGTATCTCGCTGAAGCAATCGATATCGTTTGGTCTATCATCTAGAGGAATTTGGGGTCGGCACTACACCAACTGGTTTAAGTCTTCTTAGAGATATTAAGGTCCTTGCCAGAAGGCTGGACAGAAGACATCTGTTTAGTCTTGGTTTTTTGCTTGTTTTCATTATCATGATATCGTCTCGTCTTCAGTGTGTATTACTTATTTCTGAATCTGCAGTCATCTGCCCAAAAACTGAGTATGTACTCTCTATAGTAATAACTGGGGCTGAACTGATGCTCCTGGGTCTTGATGATACTTCTTTATCAATCACTAGTTGCTTCAATTGTTCTCGGCAGATATGTTAATTCCTGTTGCTAGCAACCATGAAATGATGGCATGTGCCAGGTTGCCTGATACTGAAACTACCAGATATCATTT
CDS Sequence
- >LOC_Os01g69940.1
ATGGGGGAGGTGGCGGCGCTGCGGCAGCTGGTCGGCGAGGTGCAGGAGCTCTGGGACCTCTACGGCGCCAACTCCCACCCCCTCCCAAGGTGGTATTTACTGGACTTTGAGCATGGTTCAATCAAAGATGATCATTGTAGAGCAAGGACTGGATACAACTCAGAATTACTAAAGATCATGGAAGCTAACCAATCTCCTCCTCGCAAGCGCTCACGGAGGGACAAAAACCGTGAGAAAGCACCCAACTCAAACTCAACTGAAGAAATGCAACAGGAGATTTGGAGTGAGTTCCCTGGAGACCTTTTTGAAACCGTTGTTGCAAGACTTCCAGTTGCTGCAATTTTCCGATTTCGCACTGTTTGCCGGAATTGGTATTCTATGTTGGGCTCAGAAAGTTTCTCTCAGCAGTACTCAGAAGTTCCACAGAGGCTGCCATGGTTCTATACAATCACCCATGAGAATGCCAGCAACAATGTAGCGATGTATGACCCTTCGCTGAAAAAATGGCACCACCCATCAGTTCCCCTGGCTCCTGCAAAGATAGTAATTCCAGTGGCATCTGCAGGTGGCCTTGTCTGTTTATTGGATCTTAGCCACAGGAACTTCTACATATGCAATCCGCTAACACAATCACTCAAGGAAATTCCGCGCAGGTCAGTCCAGGCATGGTCAAGAGTGGCAGTAGGGATGGTGATGAACGGAGGAACCTCTAATGAAGGTTACAAAGTAATGTGGTTAGGAAATGATGGGAATTATGAAGTCTATGATTCTATGAAGAATATGTGGTCTTGTCCAGGCACTTTTCCTCCAAGCATCAAACTTCCGCTTGCTCTAAATTTTAGGTCACAGCCTGTGGCGGTTGGCAGCATGCTATACTTCATGTGTGCAGAACCAGAGGGTGTTTTGTCGTATGATGTAAGCACTGGGATATGGAGACAATTCGTCATCCCACTGCCACTTCATCTGACTGACCACACACTTGCCGAGTTCCAGGGAAGGGTTATGCTGGTGGGTCTGCTCTGCAAAAATGCAGCGACATGTGTCTGCATTTGGGAGTTGCAGAAGATGACTCTCCTCTGGAAGGAGGTGGACAGAATGCCAAATATCTGGTGCTTAGAATTCTACGGTAAGCACATGAAGATGACATGCCTGGGCAACAGTGGTTTGCTCATGCTCTCCTTGAAGGCGAAGCGGATGAACCGCCTCGTGACATACAACCTTTTGAACAAGGAGTGGCAGAAGGTTCCTGATTGCATGCTCCCATGCAGCCGCAAAAAGCAGTGGATAGCATGTGGCACAGCATTTGGTCCATGCCCCTCTGCCTTGGCCTGA
Protein Sequence
- >LOC_Os01g69940.1
MGEVAALRQLVGEVQELWDLYGANSHPLPRWYLLDFEHGSIKDDHCRARTGYNSELLKIMEANQSPPRKRSRRDKNREKAPNSNSTEEMQQEIWSEFPGDLFETVVARLPVAAIFRFRTVCRNWYSMLGSESFSQQYSEVPQRLPWFYTITHENASNNVAMYDPSLKKWHHPSVPLAPAKIVIPVASAGGLVCLLDLSHRNFYICNPLTQSLKEIPRRSVQAWSRVAVGMVMNGGTSNEGYKVMWLGNDGNYEVYDSMKNMWSCPGTFPPSIKLPLALNFRSQPVAVGSMLYFMCAEPEGVLSYDVSTGIWRQFVIPLPLHLTDHTLAEFQGRVMLVGLLCKNAATCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHMKMTCLGNSGLLMLSLKAKRMNRLVTYNLLNKEWQKVPDCMLPCSRKKQWIACGTAFGPCPSALA*