Gene Details:
- MSU gene ID: LOC_Os01g69940
- RAPdb gene ID: Os01g0923900
- Gene Symbol: LC4
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- We show that miR394 and LC4 work, antagonistically, to regulate leaf lamina joint development and rice architecture, by modulating expansion and elongation of adaxial parenchyma cells.
- Suppressed expression of miR394, or enhanced expression of LC4, results in enlarged leaf angles, whereas reducing LC4 expression by CRISPR/Cas9 leads to reduced leaf inclination, suggesting LC4 as candidate for use in rice architecture improvement.
- Rice plants with altered expression of miR394 or LC4 have altered auxin responses, indicating that the miR394-LC4 module mediates auxin effects important for determining rice leaf inclination and architecture.
- LC4 interacts with SKP1, a component of the SCF E3 ubiquitin ligase complex, and transcription of both miR394 and LC4 are regulated by auxin.
Function-related keywords:
- leaf , auxin , development , architecture , auxin-response , lamina , Ubiquitin , lamina-joint , leaf-angle
Literature:
- Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4 . DOI: 10.1111/jipb.12713 ; PMID: 30144351
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os01g69940.1
GCAAACCCACCACTTCTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAATATTTTTTGTTGTTGTTCTGGGGGAAGAGGAGGAGGAGGAGAGGGGCGCCGCTGCGGCGGCGGCGGGAGGAGGGAGGATGGGGGAGGTGGCGGCGCTGCGGCAGCTGGTCGGCGAGGTGCAGGAGCTCTGGGACCTCTACGGCGCCAACTCCCACCCCCTCCCAAGGTGGTATTTACTGGACTTTGAGCATGGTTCAATCAAAGATGATCATTGTAGAGCAAGGACTGGATACAACTCAGAATTACTAAAGATCATGGAAGCTAACCAATCTCCTCCTCGCAAGCGCTCACGGAGGGACAAAAACCGTGAGAAAGCACCCAACTCAAACTCAACTGAAGAAATGCAACAGGAGATTTGGAGTGAGTTCCCTGGAGACCTTTTTGAAACCGTTGTTGCAAGACTTCCAGTTGCTGCAATTTTCCGATTTCGCACTGTTTGCCGGAATTGGTATTCTATGTTGGGCTCAGAAAGTTTCTCTCAGCAGTACTCAGAAGTTCCACAGAGGCTGCCATGGTTCTATACAATCACCCATGAGAATGCCAGCAACAATGTAGCGATGTATGACCCTTCGCTGAAAAAATGGCACCACCCATCAGTTCCCCTGGCTCCTGCAAAGATAGTAATTCCAGTGGCATCTGCAGGTGGCCTTGTCTGTTTATTGGATCTTAGCCACAGGAACTTCTACATATGCAATCCGCTAACACAATCACTCAAGGAAATTCCGCGCAGGTCAGTCCAGGCATGGTCAAGAGTGGCAGTAGGGATGGTGATGAACGGAGGAACCTCTAATGAAGGTTACAAAGTAATGTGGTTAGGAAATGATGGGAATTATGAAGTCTATGATTCTATGAAGAATATGTGGTCTTGTCCAGGCACTTTTCCTCCAAGCATCAAACTTCCGCTTGCTCTAAATTTTAGGTCACAGCCTGTGGCGGTTGGCAGCATGCTATACTTCATGTGTGCAGAACCAGAGGGTGTTTTGTCGTATGATGTAAGCACTGGGATATGGAGACAATTCGTCATCCCACTGCCACTTCATCTGACTGACCACACACTTGCCGAGTTCCAGGGAAGGGTTATGCTGGTGGGTCTGCTCTGCAAAAATGCAGCGACATGTGTCTGCATTTGGGAGTTGCAGAAGATGACTCTCCTCTGGAAGGAGGTGGACAGAATGCCAAATATCTGGTGCTTAGAATTCTACGGTAAGCACATGAAGATGACATGCCTGGGCAACAGTGGTTTGCTCATGCTCTCCTTGAAGGCGAAGCGGATGAACCGCCTCGTGACATACAACCTTTTGAACAAGGAGTGGCAGAAGGTTCCTGATTGCATGCTCCCATGCAGCCGCAAAAAGCAGTGGATAGCATGTGGCACAGCATTTGGTCCATGCCCCTCTGCCTTGGCCTGACAGTTTTTTTTCACTTTCTTCACCAAAGGTGGTTGAGATTTCACACATTCCGGATCATTGGCCTATCCTTAGATATTTCCGTCTTACCGTGAGAAGGTTATCTGTCATGTACAAAATCATGTAACCTGTGGTTGTTTTTGTATCTCGCTGAAGCAATCGATATCGTTTGGTCTATCATCTAGAGGAATTTGGGGTCGGCACTACACCAACTGGTTTAAGTCTTCTTAGAGATATTAAGGTCCTTGCCAGAAGGCTGGACAGAAGACATCTGTTTAGTCTTGGTTTTTTGCTTGTTTTCATTATCATGATATCGTCTCGTCTTCAGTGTGTATTACTTATTTCTGAATCTGCAGTCATCTGCCCAAAAACTGAGTATGTACTCTCTATAGTAATAACTGGGGCTGAACTGATGCTCCTGGGTCTTGATGATACTTCTTTATCAATCACTAGTTGCTTCAATTGTTCTCGGCAGATATGTTAATTCCTGTTGCTAGCAACCATGAAATGATGGCATGTGCCAGGTTGCCTGATACTGAAACTACCAGATATCATTT
CDS Sequence
- >LOC_Os01g69940.1
ATGGGGGAGGTGGCGGCGCTGCGGCAGCTGGTCGGCGAGGTGCAGGAGCTCTGGGACCTCTACGGCGCCAACTCCCACCCCCTCCCAAGGTGGTATTTACTGGACTTTGAGCATGGTTCAATCAAAGATGATCATTGTAGAGCAAGGACTGGATACAACTCAGAATTACTAAAGATCATGGAAGCTAACCAATCTCCTCCTCGCAAGCGCTCACGGAGGGACAAAAACCGTGAGAAAGCACCCAACTCAAACTCAACTGAAGAAATGCAACAGGAGATTTGGAGTGAGTTCCCTGGAGACCTTTTTGAAACCGTTGTTGCAAGACTTCCAGTTGCTGCAATTTTCCGATTTCGCACTGTTTGCCGGAATTGGTATTCTATGTTGGGCTCAGAAAGTTTCTCTCAGCAGTACTCAGAAGTTCCACAGAGGCTGCCATGGTTCTATACAATCACCCATGAGAATGCCAGCAACAATGTAGCGATGTATGACCCTTCGCTGAAAAAATGGCACCACCCATCAGTTCCCCTGGCTCCTGCAAAGATAGTAATTCCAGTGGCATCTGCAGGTGGCCTTGTCTGTTTATTGGATCTTAGCCACAGGAACTTCTACATATGCAATCCGCTAACACAATCACTCAAGGAAATTCCGCGCAGGTCAGTCCAGGCATGGTCAAGAGTGGCAGTAGGGATGGTGATGAACGGAGGAACCTCTAATGAAGGTTACAAAGTAATGTGGTTAGGAAATGATGGGAATTATGAAGTCTATGATTCTATGAAGAATATGTGGTCTTGTCCAGGCACTTTTCCTCCAAGCATCAAACTTCCGCTTGCTCTAAATTTTAGGTCACAGCCTGTGGCGGTTGGCAGCATGCTATACTTCATGTGTGCAGAACCAGAGGGTGTTTTGTCGTATGATGTAAGCACTGGGATATGGAGACAATTCGTCATCCCACTGCCACTTCATCTGACTGACCACACACTTGCCGAGTTCCAGGGAAGGGTTATGCTGGTGGGTCTGCTCTGCAAAAATGCAGCGACATGTGTCTGCATTTGGGAGTTGCAGAAGATGACTCTCCTCTGGAAGGAGGTGGACAGAATGCCAAATATCTGGTGCTTAGAATTCTACGGTAAGCACATGAAGATGACATGCCTGGGCAACAGTGGTTTGCTCATGCTCTCCTTGAAGGCGAAGCGGATGAACCGCCTCGTGACATACAACCTTTTGAACAAGGAGTGGCAGAAGGTTCCTGATTGCATGCTCCCATGCAGCCGCAAAAAGCAGTGGATAGCATGTGGCACAGCATTTGGTCCATGCCCCTCTGCCTTGGCCTGA
Protein Sequence
- >LOC_Os01g69940.1
MGEVAALRQLVGEVQELWDLYGANSHPLPRWYLLDFEHGSIKDDHCRARTGYNSELLKIMEANQSPPRKRSRRDKNREKAPNSNSTEEMQQEIWSEFPGDLFETVVARLPVAAIFRFRTVCRNWYSMLGSESFSQQYSEVPQRLPWFYTITHENASNNVAMYDPSLKKWHHPSVPLAPAKIVIPVASAGGLVCLLDLSHRNFYICNPLTQSLKEIPRRSVQAWSRVAVGMVMNGGTSNEGYKVMWLGNDGNYEVYDSMKNMWSCPGTFPPSIKLPLALNFRSQPVAVGSMLYFMCAEPEGVLSYDVSTGIWRQFVIPLPLHLTDHTLAEFQGRVMLVGLLCKNAATCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHMKMTCLGNSGLLMLSLKAKRMNRLVTYNLLNKEWQKVPDCMLPCSRKKQWIACGTAFGPCPSALA*