Information report for SBDCP1
Gene Details
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Functional Descriptions
- Reciprocal immunoprecipitation and pull-down assays indicated an interaction between SBDCP1 and starch synthase IIIa (SSIIIa), which was down-regulated at the protein level in the CS8 line.
- Furthermore, binding by SBDCP1 inhibited SSIIIa starch polymerization activity in a non-competitive manner.
- Surprisingly, artificial microRNA gene suppression of SBDCP1 restored protein expression levels of SSIIIa in the CS8 line resulting in starch with lower amylose content and increased amylopectin chains with a higher degree of polymerization.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q94DE9
- EMBL: AK107570, AP014957
- AlphaFoldDB: Q94DE9
- EnsemblPlants: Os01t0856900-01
- Gramene: Os01t0856900-01
- KEGG: osa:4324752
- Orthologous matrix: MMVANET
- InterPro: IPR002044, IPR013783, IPR013784
- PANTHER: PTHR15048, PTHR15048:SF0
- SUPFAM: SSF49452
- PROSITE: PS51166
- Gene3D: 2.60.40.10
- OrthoDB: Q94DE9
- SWISS-MODEL: Q94DE9
- Conserved Domain Database: cd05467
- eggNOG: ENOG502QU99
Sequences
cDNA Sequence
- >LOC_Os01g63810.1
GCGATTCCCTCGTCCCACCCTGCTGAAAAAGGCCCGCCCGGAGCGCGAATGCATCCGTGCCGCGTCAAGCAACTCTCGGTGGTGTGGTGTCCACTGTGCAGCTCCCGTGCAGGCGTTCCGCTTTGATGGAAACCGCCGCGGCCGTGGTGTGCCGAGGCGGCGGGCTGCGCGCGCCGGCGCGTCGCGGTGGCAGTGACAGCAGCACGACGCGCGCGGGTGGCGTTGCTGCCTCCCCGGCGCCCGCCACCACCGCGCGACGGAGGCCGCTGCTCGTCGCGTCGCTCGGGGAGCCCCTCATCACGGCGCAACCCTTGTCGTCGTCCCTGGGAGATGGCGCCGCGGTACACGAGACGCTGGCTCGCTCCGATTCGGTGATCCCGTCGCTGAAGCCGTCTCACTGCGTTGATCACTCGGTCCAGGTTGACGCCGACGAGGAGACCGGCTCCACCAAGACACTCCCACCTCCTGATGACGTTCCTACGAAGACAGTGCACGTCAAATTCGTGCTGCAAAAGCGGTGCGCGTTCGGGCAGCGCTTCCTCGTCGTCGGCGACGTCGCGGCGCTCGGTCTCTGGAATCCGGCGAAGGCGGCTGCTCTGGATTGGTCCGAAGACCACGTGTGGACAGTGAAGAAGGAATTGCCAGCAGAAAGATCGATCGAGTTCAAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATACTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAGAATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGAACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCACAGTTAGCATTGGACAAACACCACAAGATTCCAGATGAGCTTAGTGGGGAGGCAAACATGGCAGCACAAGATGGCAATCACACTGCTACTGCAGCCGCAGCTTCTGGTTTTGCTGGAAGCAACGGTGAGGATGCCATCTTGCACAAGGAGGGCGATCCAGTAGAGAATAATAGGCTGGGGCTGGCCAGCATTTTCTTCAATGACATGGCCTGGACCAGGAAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGAAAAACATGAAGTAAGCATCAGAGACGCTGACCTGCAGTTTTGGCTGATCACACGGTCTCGCGGTGCCTTCATTCAAAACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAACTGCAACAAAAAACCCTTTACGTTGCTAAGGTCTGCAACACCAGCAGTACTTGTTAGCAGTGCAAAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACCAGTAATGACTAAGCTACCAAAAAACTCAATTAGTGAAATGCATATTGTGGTTAAATTTATCTGTTCGATAAATTCTGTAGAATACATCTAGAATAAGAGCCAGGAAAAGCTGAAAGTCTGGAGATTTGGCATAACATGTGCTCCATAACCACAACGTATAAGCTCAACCACATGTACTTTAATCCACCAGATTTACGTTCATTTCTCAATCATTTCAGTTGTAATGCTAATATGCTCTTGTTCTGGTGATCTAGTAAAAATGATGTCCATGATTTGCAATGCTTTCTTTAATTTACATAAGAAAGCTGGCAGCATTTAAAACATGTAAACGTGAAATATCAGCGTGGACATTCCACTTTAATTAAACTAACTTGTTTACAAATAACTGTATCCGTCAAGGAAACAGTCAATATTCATGACATACCCCTACCCCTACCTGTTTACAGCTATCCAACTACGCCAGTATCCTGTGAAGATTACAGCTTTGGTTGTATGGAGCAAACGGTCCAAGGTCAACAGAATCCACGATGCACCATGCCCAATTCTCTATAATTTATCACCTTCTAAACTCGGAGAGGCAAAAAACACTTTGCATGAAAATCATGGTTCAAGAGGCAGCCAGCCAACCATAATTGGA - >LOC_Os01g63810.2
GCGATTCCCTCGTCCCACCCTGCTGAAAAAGGCCCGCCCGGAGCGCGAATGCATCCGTGCCGCGTCAAGCAACTCTCGGTGGTGTGGTGTCCACTGTGCAGCTCCCGTGCAGGCGTTCCGCTTTGATGGAAACCGCCGCGGCCGTGGTGTGCCGAGGCGGCGGGCTGCGCGCGCCGGCGCGTCGCGGTGGCAGTGACAGCAGCACGACGCGCGCGGGTGGCGTTGCTGCCTCCCCGGCGCCCGCCACCACCGCGCGACGGAGGCCGCTGCTCGTCGCGTCGCTCGGGGAGCCCCTCATCACGGCGCAACCCTTGTCGTCGTCCCTGGGAGATGGCGCCGCGGTACACGAGACGCTGGCTCGCTCCGATTCGGTGATCCCGTCGCTGAAGCCGTCTCACTGCGTTGATCACTCGGTCCAGGTTGACGCCGACGAGGAGACCGGCTCCACCAAGACACTCCCACCTCCTGATGACGTTCCTACGAAGACAGTGCACGTCAAATTCGTGCTGCAAAAGCGGTGCGCGTTCGGGCAGCGCTTCCTCGTCGTCGGCGACGTCGCGGCGCTCGGTCTCTGGAATCCGGCGAAGGCGGCTGCTCTGGATTGGTCCGAAGACCACGTGTGGACAGTGAAGAAGGAATTGCCAGCAGAAAGATCGATCGAGTTCAAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATACTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAGAATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGAACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCACAGTTAGCATTGGACAAACACCACAAGATTCCAGATGAGCTTAGTGGGGAGGCAAACATGGCAGCACAAGATGGCAATCACACTGCTACTGCAGCCGCAGCTTCTGGTTTTGCTGGAAGCAACGGTGAGGATGCCATCTTGCACAAGGAGGGCGATCCAGTAGAGAATAATAGGCTGGGGCTGGCCAGCATTTTCTTCAATGACATGGCCTGGACCAGGAAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGAAAAACATGAAGTAAGCATCAGAGACGCTGACCTGCAGTTTTGGCTGATCACACGGTCTCGCGGTGCCTTCATTCAAAACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAACTGCAACAAAAAACCCTTTACGTTGCTAAGGTCTGCAACACCAGCAGTACTTGTTAGCAGTGCAAAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACCAGTAATGACTAAGCTACCAAAAAACTCAATTAGTGAAATGCATATTGTGGTTAAATTTATCTGTTCGATAAATTCTGTAGAATACATCTAGAATAAGAGCCAGGAAAAGCTGAAAGTCTGGAGATTTGGCATAACATGTGCTCCATAACCACAACGTATAAGCTCAACCACATGTACTTTAATCCACCAGATTTACGTTCATTTCTCAATCATTTCAGTTGTAATGCTAATATGCTCTTGTTCTGGTGATCTAGTAAAAATGATGTCCATGATTTGCAATGCTTTCTTTAATTTACATAAGAAAGCTGGCAGCATTTAAAACATGTAAACGTGAAATATCAGCGTGGACATTCCACTTTAATTAAACTAACTTGTTTACAAATAACTGTATCCGTCAAGGAAACAGTCAATATTCATGACATACCCCTACCCCTACCTGTTTACAGCTATCCAACTACGCCAGTATCCTGTGAAGATTACAGCTTTGGTTGTATGGAGCAAACGGTCCAAGGTCAACAGAATCCACGATGCACCATGCCCAATTCTCTATAATTTATCACCTTCTAAACTCGGAGAGGCAAAAAACACTTTGCATGAAAATCATGGTTCAAGAGGCAGCCAGCCAACCATAATTGGA
CDS Sequence
- >LOC_Os01g63810.1
ATGGAAACCGCCGCGGCCGTGGTGTGCCGAGGCGGCGGGCTGCGCGCGCCGGCGCGTCGCGGTGGCAGTGACAGCAGCACGACGCGCGCGGGTGGCGTTGCTGCCTCCCCGGCGCCCGCCACCACCGCGCGACGGAGGCCGCTGCTCGTCGCGTCGCTCGGGGAGCCCCTCATCACGGCGCAACCCTTGTCGTCGTCCCTGGGAGATGGCGCCGCGGTACACGAGACGCTGGCTCGCTCCGATTCGGTGATCCCGTCGCTGAAGCCGTCTCACTGCGTTGATCACTCGGTCCAGGTTGACGCCGACGAGGAGACCGGCTCCACCAAGACACTCCCACCTCCTGATGACGTTCCTACGAAGACAGTGCACGTCAAATTCGTGCTGCAAAAGCGGTGCGCGTTCGGGCAGCGCTTCCTCGTCGTCGGCGACGTCGCGGCGCTCGGTCTCTGGAATCCGGCGAAGGCGGCTGCTCTGGATTGGTCCGAAGACCACGTGTGGACAGTGAAGAAGGAATTGCCAGCAGAAAGATCGATCGAGTTCAAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATACTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAGAATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGAACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCACAGTTAGCATTGGACAAACACCACAAGATTCCAGATGAGCTTAGTGGGGAGGCAAACATGGCAGCACAAGATGGCAATCACACTGCTACTGCAGCCGCAGCTTCTGGTTTTGCTGGAAGCAACGGTGAGGATGCCATCTTGCACAAGGAGGGCGATCCAGTAGAGAATAATAGGCTGGGGCTGGCCAGCATTTTCTTCAATGACATGGCCTGGACCAGGAAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGAAAAACATGA - >LOC_Os01g63810.2
ATGGAAACCGCCGCGGCCGTGGTGTGCCGAGGCGGCGGGCTGCGCGCGCCGGCGCGTCGCGGTGGCAGTGACAGCAGCACGACGCGCGCGGGTGGCGTTGCTGCCTCCCCGGCGCCCGCCACCACCGCGCGACGGAGGCCGCTGCTCGTCGCGTCGCTCGGGGAGCCCCTCATCACGGCGCAACCCTTGTCGTCGTCCCTGGGAGATGGCGCCGCGGTACACGAGACGCTGGCTCGCTCCGATTCGGTGATCCCGTCGCTGAAGCCGTCTCACTGCGTTGATCACTCGGTCCAGGTTGACGCCGACGAGGAGACCGGCTCCACCAAGACACTCCCACCTCCTGATGACGTTCCTACGAAGACAGTGCACGTCAAATTCGTGCTGCAAAAGCGGTGCGCGTTCGGGCAGCGCTTCCTCGTCGTCGGCGACGTCGCGGCGCTCGGTCTCTGGAATCCGGCGAAGGCGGCTGCTCTGGATTGGTCCGAAGACCACGTGTGGACAGTGAAGAAGGAATTGCCAGCAGAAAGATCGATCGAGTTCAAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATACTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAGAATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGAACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCACAGTTAGCATTGGACAAACACCACAAGATTCCAGATGAGCTTAGTGGGGAGGCAAACATGGCAGCACAAGATGGCAATCACACTGCTACTGCAGCCGCAGCTTCTGGTTTTGCTGGAAGCAACGGTGAGGATGCCATCTTGCACAAGGAGGGCGATCCAGTAGAGAATAATAGGCTGGGGCTGGCCAGCATTTTCTTCAATGACATGGCCTGGACCAGGAAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGAAAAACATGA
Protein Sequence
- >LOC_Os01g63810.1
METAAAVVCRGGGLRAPARRGGSDSSTTRAGGVAASPAPATTARRRPLLVASLGEPLITAQPLSSSLGDGAAVHETLARSDSVIPSLKPSHCVDHSVQVDADEETGSTKTLPPPDDVPTKTVHVKFVLQKRCAFGQRFLVVGDVAALGLWNPAKAAALDWSEDHVWTVKKELPAERSIEFKFLLQDRSGHVEWQHGRNRILHVADTSNTLIVCEDWDEAKNQQVSEEIGDADGIFSGSDGVFQEDELQLGEEQETNKGVTVGVDDAKSALVTYIYREMMGANDAIQPQLALDKHHKIPDELSGEANMAAQDGNHTATAAAASGFAGSNGEDAILHKEGDPVENNRLGLASIFFNDMAWTRKALQQLLRSLGFQIGTRKT* - >LOC_Os01g63810.2
METAAAVVCRGGGLRAPARRGGSDSSTTRAGGVAASPAPATTARRRPLLVASLGEPLITAQPLSSSLGDGAAVHETLARSDSVIPSLKPSHCVDHSVQVDADEETGSTKTLPPPDDVPTKTVHVKFVLQKRCAFGQRFLVVGDVAALGLWNPAKAAALDWSEDHVWTVKKELPAERSIEFKFLLQDRSGHVEWQHGRNRILHVADTSNTLIVCEDWDEAKNQQVSEEIGDADGIFSGSDGVFQEDELQLGEEQETNKGVTVGVDDAKSALVTYIYREMMGANDAIQPQLALDKHHKIPDELSGEANMAAQDGNHTATAAAASGFAGSNGEDAILHKEGDPVENNRLGLASIFFNDMAWTRKALQQLLRSLGFQIGTRKT*