Gene Details:

Functional Descriptions:

  • The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering.
  • OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).
  • The auxin influx carriers in Arabidopsis have been shown to control lateral root development and gravitropism, but little is known about these proteins in rice.
  • Three OsAUX1 T-DNA insertion mutants and RNAi knockdown transgenic plants reduced lateral root initiation compared to WT plants.
  • OsAUX1 overexpression plants exhibited increased lateral root initiation and OsAUX1 was highly expressed in lateral roots and lateral root primordia.
  • Similarly, the auxin reporter, DR5-GUS, was expressed at lower levels in OsAUX1 than in the WT plants, which indicated that the auxin levels in the mutant roots had decreased.
  • Overall, our results indicated that OsAUX1 was involved in polar auxin transport and functioned to control auxin-mediated lateral root initiation in rice.
  • Polar auxin transport, mediated by influx and efflux transporters, controls many aspects of plant growth and development.
  • Exogenous NAA treatment rescued the defective phenotype in OsAUX1-1 plants, whereas IAA and 2,4-D could not, which suggested that OsAUX1 was a putative auxin influx carrier.
  • The transcript levels of several auxin-signaling genes and cell cycle genes significantly declined in OsAUX1, hinting that the regulatory role of OsAUX1 may be mediated by auxin-signaling and cell cycle genes.
  • OsAUX1 expression in root hair cells is different from its paralogous gene, AtAUX1, expressed in non-hair cells.
  • Taken together, our results indicate that OsAUX1 plays an important role in root development and in responses to Cd stress.
  • However, OsAUX1 - like AtAUX1 - also localizes at the plasma membrane and seems to function as an auxin tranporter.
  • Decreased auxin distribution and contents in OsAUX1 mutant result in reduction of OsCyCB1;1 expression and shortened PR, LR and RH under Cd stress, but can be rescued by the membrane-permeable auxin, 1-naphthaleneacetic acid (NAA).
  • Here, we characterize rice OsAUX1 mutants that have longer PR and shorter RH in hydroponic culture, and that are more sensitive to Cd stress compared to WT/Dongjin (DJ).
  • Cd contents in the OsAUX1 mutant were not altered but reactive oxygen species (ROS)-mediated damage was enhanced, further increasing the OsAUX1 mutant sensitivity to Cd stress.
  • Moreover, protein localization of auxin transporters PIN1 homologs and GFP tagged OsAUX1 overlapped with DR5-VENUS during spikelet development, helping validate these auxin response reporters are reliable markers in rice.
  • Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.
  • Here, we attempted to modify root angle in rice by disrupting the OsAUX1 auxin influx transporter gene in an effort to improve rice P acquisition efficiency.
  • We show by X-ray microCT imaging that root angle is altered in the OsAUX1 mutant, causing preferential foraging in the top soil where P normally accumulates, yet surprisingly, P acquisition efficiency does not improve.
  • Through closer investigation, we reveal that OsAUX1 also promotes root hair elongation in response to P limitation.
  • We demonstrate that OsAUX1 functions to mobilize auxin from the root apex to the differentiation zone where this signal promotes hair elongation when roots encounter low external P.
  • We conclude that auxin and OsAUX1 play key roles in promoting root foraging for P in rice.
  • The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os01g63770.1
    ATCTTCCTCTTCCCTCCCCTCTCTCTCCATCACCAGCTCATCCCTCTCTAGCGCTCGTTCGCCCGCCCCTCCCCCCTACGGCCCTACGAGCGCCGCGCTTCTCTTTCTAGCCCCCTCTTCCGCATTACTCCCTCATAAAGGAGGAACAGAGGAAAGACTGGGCAGAGGAGAGGACCTATAGCTGAGAAGAAGCAGAGCAAGTGAAGGAGAAAGCCCCGTAATCTTGGCCATCCTCCTCCTCCTGCTGCTGCTGCAACTCCGGCTCTGCCTTTAAACAGTGCAGCCCGGGCGGCGCCGGCCACGACGCTCGTACTCCTAGCTAGCAGCGGAGAACGAACAGCGTGCAGGGACTCGCCTCGATAGCACAGTAAATTCCATTCCATATCATATACCATTCCAGCCATCACTCTCCACCGGCACCCTGCATTTACTGCTCCCCCATCACTCGCCCCGGCTTCCTTGAGCGCGATCTCCAGATCATCTTTTGTGTAGCGAGAAAGCTGACGACGGGGAAGGGCGGCGTGGTCAGCATGGTGCCGCGCGAGCAGGCGGAGGAGGCCATCGTGGCTGACAGCAACGGCAAGGAGGAGGAGGTCGGGGTGATGGGCGTCAGCGCCGGGGAGCACGGCGCCGACGACCACCACGGCGGCGGCGGCAAGTTCAGCATGAAGAACCTGCTCTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGGTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGCTCTCGGGCGTGCTGCTGCAGCTGTTCTACGGTTTCATGGGCAGCTGGACCGCCTACCTAATCAGCGTCCTCTACGTCGAGTACCGCTCCCGCAAGGAGAAGGAAGGCGTCAGCTTCAAGAACCACGTCATCCAGTGGTTCGAGGTGCTGGATGGGCTACTGGGCCCGTACTGGAAGGCGGCCGGACTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGTAACATCTACTACATCAACGACCGGCTGGACAAGCGGACGTGGACGTACATCTTCGGCGCGTGCTGCGCCACCACGGTGTTCATCCCGTCGTTCCACAACTACCGGATCTGGTCCTTCCTGGGCCTCGGCATGACCACCTATACCGCTTGGTACCTCGCCATCGCCGCCCTCCTCAACGGCCAGGCCGAAGGCATCACCCACACCGGTCCAACCAAGCTGGTGCTGTACTTCACCGGCGCCACCAACATCCTCTACACCTTCGGCGGCCACGCCGTCACAGTGGAGATCATGCACGCGATGTGGAAACCGGCCAAGTTCAAGTACATCTACCTGCTGGCGACGCTGTACGTGTTCACGCTGACGCTGCCGTCGGCGTCGGCCATGTACTGGGCGTTCGGGGACGAGCTGCTGACCCACTCCAACGCCTTCTCGCTGCTGCCCAAGACCGGGTGGCGCGACGCGGCGGTGATACTGATGCTGATCCACCAGTTCATCACGTTCGGGTTCGCGTGCACGCCGCTCTACTTCGTGTGGGAGAAGGTGATCGGCATGCACGACACCAAGAGCATCTGCCTCAGGGCGCTCGCGCGGCTCCCCATCGTCGTCCCCATCTGGTTCCTCGCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCGTGCTCAACATGTTCATCGTGGTGTGGGTGCTCGTGGTGGGCTTCGGGCTCGGCGGCTGGGCCAGCATGGTCAACTTCATCAGGCAGATCGACACGTTCGGGCTCTTCGCCAAGTGCTACCAGTGTCCCAAGCCCGCCCCGGCGTTGGCGCAGTCGCCGGTGCCATTGCCGCACCACTAGCGCGCGCCCGTTCCGCACCACCGCCGCCGCCGCGGCGGACCGTGACAACGTGCACCGCCGAGCCCGGAGCAAGGAACCTCGCTCTCCTGGCCGGCACGGCTGCAAAAATTCAGTGTTGCTTAGGTTTTGGTCGCCTTGTAATATACAAAGCCTCTCCTCCTGTGCTAGGGTGTCACACCAAAATGGTAGAAGAAGAAGAGGGCATGGGTCCCTACGATCTTGCCCCGGGCCGTCCGCTGCCGCGTTGCTTTCCCCCGATCCTCGATGGTGTCCTTGTGTTTGTTTGGCTTGCCCCTCCCTCTGGCGATATATATGTGATGGTCGTCATGGCTTATAAAGATTTTCAGCTCATGTCACATTTTCATATGATATGATGTAGCATATCACTATAGGGTTATTTGTTTTCTACCTGGATGGAGCTTGGTCCATGTTGTCTAGCGCGAGCAATTGTAATCGGCGATTCCTCGTGCTAGCTAAAGGCAAAACACGGAGGCCTTTGTTTATTGCGTTCCGCTTTGGATGTTCTTATTGTAAATGTAGAGCGATTGCTCGCTTTTTTTTTTCTTCTCTTCCGTATGTGTTACCTTTGCGCCAAGCGATTAAAGTTTCTTGAGAAATTTTATGGGCTTCTTTGAAAGGACCACAAAGCAAGGGAGAAAGATATGGAGCAAAAAAAAAGA
  • >LOC_Os01g63770.2
    ATCTTCCTCTTCCCTCCCCTCTCTCTCCATCACCAGCTCATCCCTCTCTAGCGCTCGTTCGCCCGCCCCTCCCCCCTACGGCCCTACGAGCGCCGCGCTTCTCTTTCTAGCCCCCTCTTCCGCATTACTCCCTCATAAAGGAGGAACAGAGGAAAGACTGGGCAGAGGAGAGGACCTATAGCTGAGAAGAAGCAGAGCAAGTGAAGGAGAAAGCCCCGTAATCTTGGCCATCCTCCTCCTCCTGCTGCTGCTGCAACTCCGGCTCTGCCTTTAAACAGTGCAGCCCGGGCGGCGCCGGCCACGACGCTCGTACTCCTAGCTAGCAGCGGAGAACGAACAGCGTGCAGGGACTCGCCTCGATAGCACAGTAAATTCCATTCCATATCATATACCATTCCAGCCATCACTCTCCACCGGCACCCTGCATTTACTGCTCCCCCATCACTCGCCCCGGCTTCCTTGAGCGCGATCTCCAGATCATCTTTTGTGTAGCGAGAAAGCTGACGACGGGGAAGGGCGGCGTGGTCAGCATGGTGCCGCGCGAGCAGGCGGAGGAGGCCATCGTGGCTGACAGCAACGGCAAGGAGGAGGAGGTCGGGGTGATGGGCGTCAGCGCCGGGGAGCACGGCGCCGACGACCACCACGGCGGCGGCGGCAAGTTCAGCATGAAGAACCTGCTCTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGGTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGCTCTCGGGCGTGCTGCTGCAGCTGTTCTACGGTTTCATGGGCAGCTGGACCGCCTACCTAATCAGCGTCCTCTACGTCGAGTACCGCTCCCGCAAGGAGAAGGAAGGCGTCAGCTTCAAGAACCACGTCATCCAGTGGTTCGAGGTGCTGGATGGGCTACTGGGCCCGTACTGGAAGGCGGCCGGACTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGTAACATCTACTACATCAACGACCGGCTGGACAAGCGGACGTGGACGTACATCTTCGGCGCGTGCTGCGCCACCACGGTGTTCATCCCGTCGTTCCACAACTACCGGATCTGGTCCTTCCTGGGCCTCGGCATGACCACCTATACCGCTTGGTACCTCGCCATCGCCGCCCTCCTCAACGGCCAGGCCGAAGGCATCACCCACACCGGTCCAACCAAGCTGGTGCTGTACTTCACCGGCGCCACCAACATCCTCTACACCTTCGGCGGCCACGCCGTCACAGTGGAGATCATGCACGCGATGTGGAAACCGGCCAAGTTCAAGTACATCTACCTGCTGGCGACGCTGTACGTGTTCACGCTGACGCTGCCGTCGGCGTCGGCCATGTACTGGGCGTTCGGGGACGAGCTGCTGACCCACTCCAACGCCTTCTCGCTGCTGCCCAAGACCGGGTGGCGCGACGCGGCGGTGATACTGATGCTGATCCACCAGTTCATCACGTTCGGGTTCGCGTGCACGCCGCTCTACTTCGTGTGGGAGAAGGTGATCGGCATGCACGACACCAAGAGCATCTGCCTCAGGGCGCTCGCGCGGCTCCCCATCGTCGTCCCCATCTGGTTCCTCGCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCGTGCTCAACATGTTCATCGTGGTGTGGGTGCTCGTGGTGGGCTTCGGGCTCGGCGGCTGGGCCAGCATGGTCAACTTCATCAGGCAGATCGACACGTTCGGGCTCTTCGCCAAGTGCTACCAGTGTCCCAAGCCCGCCCCGGCGTTGGCGCAGTCGCCGGTGCCATTGCCGCACCACTAGCGCGCGCCCGTTCCGCACCACCGCCGCCGCCGCGGCGGACCGTGACAACGTGCACCGCCGAGCCCGGAGCAAGGAACCTCGCTCTCCTGGCCGGCACGGCTGCAAAAATTCAGTGTTGCTTAGGTTTTGGTCGCCTTGTAATATACAAAGCCTCTCCTCCTGTGCTAGGGTGTCACACCAAAATGGTAGAAGAAGAAGAGGGCATGGGTCCCTACGATCTTGCCCCGGGCCGTCCGCTGCCGCGTTGCTTTCCCCCGATCCTCGATGGTGTCCTTGTGTTTGTTTGGCTTGCCCCTCCCTCTGGCGATATATATGTGATGGTCGTCATGGCTTATAAAGATTTTCAGCTCATGTCACATTTTCATATGATATGATGTAGCATATCACTATAGGGTTATTTGTTTTCTACCTGGATGGAGCTTGGTCCATGTTGTCTAGCGCGAGCAATTGTAATCGGCGATTCCTCGTGCTAGCTAAAGGCAAAACACGGAGGCCTTTGTTTATTGCGTTCCGCTTTGGATGTTCTTATTGTAAATGTAGAGCGATTGCTCGCTTTTTTTTTTCTTCTCTTCCGTATGTGTTACCTTTGCGCCAAGCGATTAAAGTTTCTTGAGAAATTTTATGGGCTTCTTTGAAAGGACCACAAAGCAAGGGAGAAAGATATGGAGCAAAAAAAAAGA
CDS Sequence
  • >LOC_Os01g63770.1
    ATGGTGCCGCGCGAGCAGGCGGAGGAGGCCATCGTGGCTGACAGCAACGGCAAGGAGGAGGAGGTCGGGGTGATGGGCGTCAGCGCCGGGGAGCACGGCGCCGACGACCACCACGGCGGCGGCGGCAAGTTCAGCATGAAGAACCTGCTCTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGGTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGCTCTCGGGCGTGCTGCTGCAGCTGTTCTACGGTTTCATGGGCAGCTGGACCGCCTACCTAATCAGCGTCCTCTACGTCGAGTACCGCTCCCGCAAGGAGAAGGAAGGCGTCAGCTTCAAGAACCACGTCATCCAGTGGTTCGAGGTGCTGGATGGGCTACTGGGCCCGTACTGGAAGGCGGCCGGACTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGTAACATCTACTACATCAACGACCGGCTGGACAAGCGGACGTGGACGTACATCTTCGGCGCGTGCTGCGCCACCACGGTGTTCATCCCGTCGTTCCACAACTACCGGATCTGGTCCTTCCTGGGCCTCGGCATGACCACCTATACCGCTTGGTACCTCGCCATCGCCGCCCTCCTCAACGGCCAGGCCGAAGGCATCACCCACACCGGTCCAACCAAGCTGGTGCTGTACTTCACCGGCGCCACCAACATCCTCTACACCTTCGGCGGCCACGCCGTCACAGTGGAGATCATGCACGCGATGTGGAAACCGGCCAAGTTCAAGTACATCTACCTGCTGGCGACGCTGTACGTGTTCACGCTGACGCTGCCGTCGGCGTCGGCCATGTACTGGGCGTTCGGGGACGAGCTGCTGACCCACTCCAACGCCTTCTCGCTGCTGCCCAAGACCGGGTGGCGCGACGCGGCGGTGATACTGATGCTGATCCACCAGTTCATCACGTTCGGGTTCGCGTGCACGCCGCTCTACTTCGTGTGGGAGAAGGTGATCGGCATGCACGACACCAAGAGCATCTGCCTCAGGGCGCTCGCGCGGCTCCCCATCGTCGTCCCCATCTGGTTCCTCGCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCGTGCTCAACATGTTCATCGTGGTGTGGGTGCTCGTGGTGGGCTTCGGGCTCGGCGGCTGGGCCAGCATGGTCAACTTCATCAGGCAGATCGACACGTTCGGGCTCTTCGCCAAGTGCTACCAGTGTCCCAAGCCCGCCCCGGCGTTGGCGCAGTCGCCGGTGCCATTGCCGCACCACTAG
  • >LOC_Os01g63770.2
    ATGGTGCCGCGCGAGCAGGCGGAGGAGGCCATCGTGGCTGACAGCAACGGCAAGGAGGAGGAGGTCGGGGTGATGGGCGTCAGCGCCGGGGAGCACGGCGCCGACGACCACCACGGCGGCGGCGGCAAGTTCAGCATGAAGAACCTGCTCTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGGTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGCTCTCGGGCGTGCTGCTGCAGCTGTTCTACGGTTTCATGGGCAGCTGGACCGCCTACCTAATCAGCGTCCTCTACGTCGAGTACCGCTCCCGCAAGGAGAAGGAAGGCGTCAGCTTCAAGAACCACGTCATCCAGTGGTTCGAGGTGCTGGATGGGCTACTGGGCCCGTACTGGAAGGCGGCCGGACTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGTAACATCTACTACATCAACGACCGGCTGGACAAGCGGACGTGGACGTACATCTTCGGCGCGTGCTGCGCCACCACGGTGTTCATCCCGTCGTTCCACAACTACCGGATCTGGTCCTTCCTGGGCCTCGGCATGACCACCTATACCGCTTGGTACCTCGCCATCGCCGCCCTCCTCAACGGCCAGGCCGAAGGCATCACCCACACCGGTCCAACCAAGCTGGTGCTGTACTTCACCGGCGCCACCAACATCCTCTACACCTTCGGCGGCCACGCCGTCACAGTGGAGATCATGCACGCGATGTGGAAACCGGCCAAGTTCAAGTACATCTACCTGCTGGCGACGCTGTACGTGTTCACGCTGACGCTGCCGTCGGCGTCGGCCATGTACTGGGCGTTCGGGGACGAGCTGCTGACCCACTCCAACGCCTTCTCGCTGCTGCCCAAGACCGGGTGGCGCGACGCGGCGGTGATACTGATGCTGATCCACCAGTTCATCACGTTCGGGTTCGCGTGCACGCCGCTCTACTTCGTGTGGGAGAAGGTGATCGGCATGCACGACACCAAGAGCATCTGCCTCAGGGCGCTCGCGCGGCTCCCCATCGTCGTCCCCATCTGGTTCCTCGCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCGTGCTCAACATGTTCATCGTGGTGTGGGTGCTCGTGGTGGGCTTCGGGCTCGGCGGCTGGGCCAGCATGGTCAACTTCATCAGGCAGATCGACACGTTCGGGCTCTTCGCCAAGTGCTACCAGTGTCCCAAGCCCGCCCCGGCGTTGGCGCAGTCGCCGGTGCCATTGCCGCACCACTAG
Protein Sequence
  • >LOC_Os01g63770.1
    MVPREQAEEAIVADSNGKEEEVGVMGVSAGEHGADDHHGGGGKFSMKNLLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLISVLYVEYRSRKEKEGVSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEGITHTGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFGDELLTHSNAFSLLPKTGWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHILTYRTASARMNAAEKPPFFLPSWTGMFVLNMFIVVWVLVVGFGLGGWASMVNFIRQIDTFGLFAKCYQCPKPAPALAQSPVPLPHH*
  • >LOC_Os01g63770.2
    MVPREQAEEAIVADSNGKEEEVGVMGVSAGEHGADDHHGGGGKFSMKNLLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLISVLYVEYRSRKEKEGVSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEGITHTGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFGDELLTHSNAFSLLPKTGWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHILTYRTASARMNAAEKPPFFLPSWTGMFVLNMFIVVWVLVVGFGLGGWASMVNFIRQIDTFGLFAKCYQCPKPAPALAQSPVPLPHH*