Information report for OsFKBP20-1b
Gene Details
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Functional Descriptions
- Expression of OsFKBP20-1b was highly upregulated under various abiotic stresses.
- Moreover genetic analysis revealed that OsFKBP20-1b positively affected transcription and pre-mRNA splicing of stress-responsive genes under abiotic stress conditions.
- OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.
- Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.
- OsFKBP20-1b facilitates the splicing of mRNAs with retained introns after ABA treatment; some of these mRNAs are translatable and encode functional transcriptional regulators of stress-responsive genes.
- In addition, interacting proteins, OsSR34 and OsSR45, regulate the splicing of the same retained introns as OsFKBP20-1b after ABA treatment.
- We determined the AS landscape of wild-type and OsFKBP20-1b knockout plants upon abscisic acid (ABA) treatment by transcriptome deep sequencing.
Functional Keywords
Literature and News
- OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice . DOI: 10.1111/tpj.14682 ; PMID: 31925835
- Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice . DOI: 10.1111/nph.18892 ; PMID: 36942934
Gene Resources
- UniProt: A0A9K3Y8I8
- EMBL: AP003240, AP008207
- EnsemblPlants: Os01t0844300-01
- Gramene: Os01t0844300-01
- KEGG: dosa:Os01g0844300
- Orthologous matrix: FDATHED
- InterPro: IPR001179, IPR046357, IPR050689
- PANTHER: PTHR10516, PTHR10516:SF326
- SUPFAM: SSF54534
- PROSITE: PS50059
- Gene3D: 3.10.50.40
- OrthoDB: A0A9K3Y8I8
- SWISS-MODEL: A0A9K3Y8I8
Sequences
cDNA Sequence
- >LOC_Os01g62610.1
ACGAAGAGCGGCAGAAGCTTTTTTTTTTCCTTAGGCAGAAGACAGAGGCAGAGGTCGTCAGTCAGTGTAGATTAGGTATACTTCGTACTGACCACCAGCTTCGTGCGCATGCATGAATGGCGAAGTGGTGGTGTAACTGACGATCGATTTCGGGAGGTAACCGGCGAGTAAGCTAGGAGAGGATGCACAGCCGCAGGACCCCCCCACCATCCATGCACAGTGGCCTTCACAAGCTCGCAGAGCTCAGCTCCGGCTGCCTGCACTGCACTGGCTGCAACATACGGTGTAGGTCGCCCAGATAGTAGCAAATATTCTCTCTACTCGAGTCTCGTCATCTCTTATCTTCAGAGTTCGCACTCTTCAAGAATACACCGGGCAACTCGCCGAAGAAGAAGCTTCAGCGGCAGAAGAAGAATCACCCATCGAGAGTTTTCCCCTCCCAAGGAAGATCAGGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGGAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCCAGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAGGAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAAGCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAAAGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAAGGCCAAATAGATAATATCACACTAAGACAAGTTATGAGGTAGGAGTATATAAAAAGTATAAAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCACACAAACACAAACTTTGTTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAAAAGAAGTCGTGTCACTTTGATCACAGTGTGCACCAGCCCATTTGTGCAAGAGTTTAATGTTTTTAGGGCATGTTCAGAGATGCAATTGGTAAAATATATGAAGTGTTTGACCTTAAAATTTCAATCCAAACAAAA
CDS Sequence
- >LOC_Os01g62610.1
ATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGGAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCCAGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAGGAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAAGCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAAAGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAAGGCCAAATAG
Protein Sequence
- >LOC_Os01g62610.1
MSETIDLTGDRCILKTVIRRAKDDATAPSDSLPIVDVHYEGTLAENGEVFDTTHEDNSVFSFEIGEGTVIKAWDIAVKTMKVGEVAKITCKPEYAYGAAGSPPEIPPDATLTFEVELIACRPRKGSSVESVSEEKARLEELKKQREIAAAAKEEEKRKREEAKAAAAARVQAKLEAKKGKGKKAK*