Gene Details:
- MSU gene ID: LOC_Os01g62610
- RAPdb gene ID: Os01g0844300
- Gene Symbol: OsFKBP20-1b
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Expression of OsFKBP20-1b was highly upregulated under various abiotic stresses.
- Moreover genetic analysis revealed that OsFKBP20-1b positively affected transcription and pre-mRNA splicing of stress-responsive genes under abiotic stress conditions.
- OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.
- Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.
- OsFKBP20-1b facilitates the splicing of mRNAs with retained introns after ABA treatment; some of these mRNAs are translatable and encode functional transcriptional regulators of stress-responsive genes.
- In addition, interacting proteins, OsSR34 and OsSR45, regulate the splicing of the same retained introns as OsFKBP20-1b after ABA treatment.
- We determined the AS landscape of wild-type and OsFKBP20-1b knockout plants upon abscisic acid (ABA) treatment by transcriptome deep sequencing.
Function-related keywords:
- abiotic-stress , stress , biotic-stress , stress-response , ABA , abscisic-acid , transcriptional-regulator
Literature:
- OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice . DOI: 10.1111/tpj.14682 ; PMID: 31925835
- Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice . DOI: 10.1111/nph.18892 ; PMID: 36942934
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os01g62610.1
ACGAAGAGCGGCAGAAGCTTTTTTTTTTCCTTAGGCAGAAGACAGAGGCAGAGGTCGTCAGTCAGTGTAGATTAGGTATACTTCGTACTGACCACCAGCTTCGTGCGCATGCATGAATGGCGAAGTGGTGGTGTAACTGACGATCGATTTCGGGAGGTAACCGGCGAGTAAGCTAGGAGAGGATGCACAGCCGCAGGACCCCCCCACCATCCATGCACAGTGGCCTTCACAAGCTCGCAGAGCTCAGCTCCGGCTGCCTGCACTGCACTGGCTGCAACATACGGTGTAGGTCGCCCAGATAGTAGCAAATATTCTCTCTACTCGAGTCTCGTCATCTCTTATCTTCAGAGTTCGCACTCTTCAAGAATACACCGGGCAACTCGCCGAAGAAGAAGCTTCAGCGGCAGAAGAAGAATCACCCATCGAGAGTTTTCCCCTCCCAAGGAAGATCAGGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGGAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCCAGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAGGAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAAGCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAAAGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAAGGCCAAATAGATAATATCACACTAAGACAAGTTATGAGGTAGGAGTATATAAAAAGTATAAAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCACACAAACACAAACTTTGTTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAAAAGAAGTCGTGTCACTTTGATCACAGTGTGCACCAGCCCATTTGTGCAAGAGTTTAATGTTTTTAGGGCATGTTCAGAGATGCAATTGGTAAAATATATGAAGTGTTTGACCTTAAAATTTCAATCCAAACAAAA
CDS Sequence
- >LOC_Os01g62610.1
ATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGGAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCCAGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAGGAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAAGCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAAAGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAAGGCCAAATAG
Protein Sequence
- >LOC_Os01g62610.1
MSETIDLTGDRCILKTVIRRAKDDATAPSDSLPIVDVHYEGTLAENGEVFDTTHEDNSVFSFEIGEGTVIKAWDIAVKTMKVGEVAKITCKPEYAYGAAGSPPEIPPDATLTFEVELIACRPRKGSSVESVSEEKARLEELKKQREIAAAAKEEEKRKREEAKAAAAARVQAKLEAKKGKGKKAK*