Gene Details:

Functional Descriptions:

  • Expression of OsFKBP20-1b was highly upregulated under various abiotic stresses.
  • Moreover genetic analysis revealed that OsFKBP20-1b positively affected transcription and pre-mRNA splicing of stress-responsive genes under abiotic stress conditions.
  • OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.
  • Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.
  • OsFKBP20-1b facilitates the splicing of mRNAs with retained introns after ABA treatment; some of these mRNAs are translatable and encode functional transcriptional regulators of stress-responsive genes.
  • In addition, interacting proteins, OsSR34 and OsSR45, regulate the splicing of the same retained introns as OsFKBP20-1b after ABA treatment.
  • We determined the AS landscape of wild-type and OsFKBP20-1b knockout plants upon abscisic acid (ABA) treatment by transcriptome deep sequencing.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os01g62610.1
    ACGAAGAGCGGCAGAAGCTTTTTTTTTTCCTTAGGCAGAAGACAGAGGCAGAGGTCGTCAGTCAGTGTAGATTAGGTATACTTCGTACTGACCACCAGCTTCGTGCGCATGCATGAATGGCGAAGTGGTGGTGTAACTGACGATCGATTTCGGGAGGTAACCGGCGAGTAAGCTAGGAGAGGATGCACAGCCGCAGGACCCCCCCACCATCCATGCACAGTGGCCTTCACAAGCTCGCAGAGCTCAGCTCCGGCTGCCTGCACTGCACTGGCTGCAACATACGGTGTAGGTCGCCCAGATAGTAGCAAATATTCTCTCTACTCGAGTCTCGTCATCTCTTATCTTCAGAGTTCGCACTCTTCAAGAATACACCGGGCAACTCGCCGAAGAAGAAGCTTCAGCGGCAGAAGAAGAATCACCCATCGAGAGTTTTCCCCTCCCAAGGAAGATCAGGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGGAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCCAGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAGGAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAAGCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAAAGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAAGGCCAAATAGATAATATCACACTAAGACAAGTTATGAGGTAGGAGTATATAAAAAGTATAAAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCACACAAACACAAACTTTGTTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAAAAGAAGTCGTGTCACTTTGATCACAGTGTGCACCAGCCCATTTGTGCAAGAGTTTAATGTTTTTAGGGCATGTTCAGAGATGCAATTGGTAAAATATATGAAGTGTTTGACCTTAAAATTTCAATCCAAACAAAA
CDS Sequence
  • >LOC_Os01g62610.1
    ATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGGAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCCAGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAGGAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAAGCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAAAGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAAGGCCAAATAG
Protein Sequence
  • >LOC_Os01g62610.1
    MSETIDLTGDRCILKTVIRRAKDDATAPSDSLPIVDVHYEGTLAENGEVFDTTHEDNSVFSFEIGEGTVIKAWDIAVKTMKVGEVAKITCKPEYAYGAAGSPPEIPPDATLTFEVELIACRPRKGSSVESVSEEKARLEELKKQREIAAAAKEEEKRKREEAKAAAAARVQAKLEAKKGKGKKAK*