Gene Details:
- MSU gene ID: LOC_Os01g57890
- RAPdb gene ID: Os01g0788800
- Gene Symbol: OSTF1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- In situ hybridization analysis on developing grains revealed that OSTF1 was strongly and uniformly expressed in the embryo at the globular stage and preferentially localized to the protoderm at 3~6 d after pollination.
- In this study, a gene designated OSTF1 (Oryza sativa transcription factor 1) encoding a homeodomain protein in rice was isolated and characterized.
Function-related keywords:
Literature:
- OSTF1: a HD-GL2 family homeobox gene is developmentally regulated during early embryogenesis in rice . DOI: 10.1093/pcp/pcf076 ; PMID: 12091716
Related News:
Gene Resources:
- NCBI ID: AF317882
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os01g57890.1
ACGGGGAAATACAACAGAATCGAAATACAGAATACTGGGTGAACGACACACTGGGAGTCACTTGCAACCTTTAGGGTTGAATCTCCAGAGATGGAAATGAATCAACAGCATAATGAGGGCAACGAATCTTTCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAATTGAGGCCGACTCAGGCTTGTTGCCTGTGAACAGTAGCAACACTAATGAAAAAAGGAAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGGTTTCAGAATAAAAGAACACAAGTAAAGACTATGTGCTGGAAGGAAGAGAACTATAAGTTGTCGGTGGAGAATGAAATTCTGAGGGATGAGAACAGGAGAGTTAAGATAGCTCACTGCACTGCTGTATGCCTCACTTGCTGTAATTCATCAGTACAGAACCAGCTTGCCGTTGAGATGGAAAGGTTAATGGGGCAGAGTGAGTGGCTGCAACAAGAGATTGCACGGTCGAATGGAACACCCCCGGCTGCAAACCTTGCCTTTCAACTTAATTCATCAGCAGACTATGTATTTTCAGGGCAACATGACCAACAAATGATTGCTGAACTAGCCAAAAACGCAATGCACGCATTGATTATTTTGGCCGAATCCCATGTCGCTCTATGGTTTCCCGTCCCTGGCTGTTCTTATGAAGTATTGAACAAGATGGCTTATGACCAAGCATATCCTGGGGATAACAGTGCAAACGCCATTGGATTCAAGACAGAGGCTACTCGTGCAGTTTCTATGGTGATGATGGACTACAAAAGCGTTGTGGATTTCCTCATGGATCCTTACAACTACCGAACTTTCTTTCCTGAAGTTATTTCCGGGGCAGTAACCAACAGGATCTACACGTGGCCTACCAGTGATGGTTATAATGGGGTTATACAACTGATGACTGTCGAGATGATGTTCCCATCGCCCCTGGTACCGGCTAGGAAATGCACATTCCTGCGCTATTGTAATGTGCTGAACGAAGGATTAGTGGTCGTCATTGATGTGTCATTGGACGATGGCAGTATCTTCTCCAAATGCCGTAAAATGCCATCAGGGTTTCTGATCCAATCCATAAGGCCAAACAGCTGCAAGGTCACTGCCATAGAGCACGTCCTTGCGGATGACACCGGTGTTCATGAGCTCTACCAGCCTTGTATGAATGGACTCGTCTTCGGAGCTCGGCGCTGGGTGGCGACCATGGCGCGGCAGTCTGCACGCATGAGAGATGTTCATCACAACAAGACAGCTCCGCAAGTCAGCACGAAGGGGAGGAAGAATCTAATGAAGCTAGCGGACGACCTGCTCGCGAGCTTCGCCGGCGGCATCGCCGCCACTGGCGGAGGAACGTGGACCGTCGTGATCGGCGCCGGCACGGAGAAGGACATCAGGGTCGCGTACAGGAGGACCACCGAGGGCAGCAGCAGCTACAACGCGATCCTGTCCGTCACCGCGTCCCTGCGTCTGCCGCTGCCCATGAGGAAAACCTTCGATCTGCTCAGGAACCTTACTCACCGCTGCAAGTGGGACGTCCTGGTGCACGGCAGCGTGGTGAAGGAGGAGGTCACCATCGCCAGAGGCGTCGGGAACGACGACACTGTCACCGTCCTCCACTGCAAGCGCGCCGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGGCTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCCCAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCTCCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTTAAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGCTGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTTTGCTTCGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTCCTTTAGAACCTATGTTGCCTCTTAATTTCTATGGGTGCTATTTTAGAACATCGATGTGCAGTTTTCTTTGCAGATTTGGTATTCTATGGATGCTCTTTTAGAACTTAAATTGCCTCTTCAATT - >LOC_Os01g57890.2
ACGGGGAAATACAACAGAATCGAAATACAGAATACTGGGTGAACGACACACTGGGAGTCACTTGCAACCTTTAGGGTTGAATCTCCAGAGATGGAAATGAATCAACAGCATAATGAGGGCAACGAATCTTTCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAATTGAGGCCGACTCAGGCTTGTTGCCTGTGAACAGTAGCAACACTAATGAAAAAAGGAAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGGTTTCAGAATAAAAGAACACAAGTAAAGACTATGTGCTGGAAGGAAGAGAACTATAAGTTGTCGGTGGAGAATGAAATTCTGAGGGATGAGAACAGGAGAGTTAAGATAGCTCACTGCACTGCTGTATGCCTCACTTGCTGTAATTCATCAGTACAGAACCAGCTTGCCGTTGAGATGGAAAGGTTAATGGGGCAGAGTGAGTGGCTGCAACAAGAGATTGCACGGTCGAATGGAACACCCCCGGCTGCAAACCTTGCCTTTCAACTTAATTCATCAGCAGACTATGTATTTTCAGGGCAACATGACCAACAAATGATTGCTGAACTAGCCAAAAACGCAATGCACGCATTGATTATTTTGGCCGAATCCCATGTCGCTCTATGGTTTCCCGTCCCTGGCTGTTCTTATGAAGTATTGAACAAGATGGCTTATGACCAAGCATATCCTGGGGATAACAGTGCAAACGCCATTGGATTCAAGACAGAGGCTACTCGTGCAGTTTCTATGGTGATGATGGACTACAAAAGCGTTGTGGATTTCCTCATGGATCCTTACAACTACCGAACTTTCTTTCCTGAAGTTATTTCCGGGGCAGTAACCAACAGGATCTACACGTGGCCTACCAGTGATGGTTATAATGGGGTTATACAACTGATGACTGTCGAGATGATGTTCCCATCGCCCCTGGTACCGGCTAGGAAATGCACATTCCTGCGCTATTGTAATGTGCTGAACGAAGGATTAGTGGTCGTCATTGATGTGTCATTGGACGATGGCAGTATCTTCTCCAAATGCCGTAAAATGCCATCAGGGTTTCTGATCCAATCCATAAGGCCAAACAGCTGCAAGGTCACTGCCATAGAGCACGTCCTTGCGGATGACACCGGTGTTCATGAGCTCTACCAGCCTTGTATGAATGGACTCGTCTTCGGAGCTCGGCGCTGGGTGGCGACCATGGCGCGGCAGTCTGCACGCATGAGAGATGTTCATCACAACAAGACAGCTCCGCAAGTCAGCACGAAGGGGAGGAAGAATCTAATGAAGCTAGCGGACGACCTGCTCGCGAGCTTCGCCGGCGGCATCGCCGCCACTGGCGGAGGAACGTGGACCGTCGTGATCGGCGCCGGCACGGAGAAGGACATCAGGGTCGCGTACAGGAGGACCACCGAGGGCAGCAGCAGCTACAACGCGATCCTGTCCGTCACCGCGTCCCTGCGTCTGCCGCTGCCCATGAGGAAAACCTTCGATCTGCTCAGGAACCTTACTCACCGCTGCAAGTGGGACGTCCTGGTGCACGGCAGCGTGGTGAAGGAGGAGGTCACCATCGCCAGAGGCGTCGGGAACGACGACACTGTCACCGTCCTCCACTGCAAGCGCGCCGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGGCTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCCCAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCTCCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTTAAGGTTGTGTTAACAACCTGTAATAATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGCTGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTACCGATGCAGTTTGCTTCGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTCCTTTAGAACCTATGTTGCCTCTTAATTTCTATGGGTGCTATTTTAGAACATCGATGTGCAGTTTTCTTTGCAGATTTGGTATTCTATGGATGCTCTTTTAGAACTTAAATTGCCTCTTCAATT
CDS Sequence
- >LOC_Os01g57890.1
ATGGAAATGAATCAACAGCATAATGAGGGCAACGAATCTTTCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAATTGAGGCCGACTCAGGCTTGTTGCCTGTGAACAGTAGCAACACTAATGAAAAAAGGAAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGGTTTCAGAATAAAAGAACACAAGTAAAGACTATGTGCTGGAAGGAAGAGAACTATAAGTTGTCGGTGGAGAATGAAATTCTGAGGGATGAGAACAGGAGAGTTAAGATAGCTCACTGCACTGCTGTATGCCTCACTTGCTGTAATTCATCAGTACAGAACCAGCTTGCCGTTGAGATGGAAAGGTTAATGGGGCAGAGTGAGTGGCTGCAACAAGAGATTGCACGGTCGAATGGAACACCCCCGGCTGCAAACCTTGCCTTTCAACTTAATTCATCAGCAGACTATGTATTTTCAGGGCAACATGACCAACAAATGATTGCTGAACTAGCCAAAAACGCAATGCACGCATTGATTATTTTGGCCGAATCCCATGTCGCTCTATGGTTTCCCGTCCCTGGCTGTTCTTATGAAGTATTGAACAAGATGGCTTATGACCAAGCATATCCTGGGGATAACAGTGCAAACGCCATTGGATTCAAGACAGAGGCTACTCGTGCAGTTTCTATGGTGATGATGGACTACAAAAGCGTTGTGGATTTCCTCATGGATCCTTACAACTACCGAACTTTCTTTCCTGAAGTTATTTCCGGGGCAGTAACCAACAGGATCTACACGTGGCCTACCAGTGATGGTTATAATGGGGTTATACAACTGATGACTGTCGAGATGATGTTCCCATCGCCCCTGGTACCGGCTAGGAAATGCACATTCCTGCGCTATTGTAATGTGCTGAACGAAGGATTAGTGGTCGTCATTGATGTGTCATTGGACGATGGCAGTATCTTCTCCAAATGCCGTAAAATGCCATCAGGGTTTCTGATCCAATCCATAAGGCCAAACAGCTGCAAGGTCACTGCCATAGAGCACGTCCTTGCGGATGACACCGGTGTTCATGAGCTCTACCAGCCTTGTATGAATGGACTCGTCTTCGGAGCTCGGCGCTGGGTGGCGACCATGGCGCGGCAGTCTGCACGCATGAGAGATGTTCATCACAACAAGACAGCTCCGCAAGTCAGCACGAAGGGGAGGAAGAATCTAATGAAGCTAGCGGACGACCTGCTCGCGAGCTTCGCCGGCGGCATCGCCGCCACTGGCGGAGGAACGTGGACCGTCGTGATCGGCGCCGGCACGGAGAAGGACATCAGGGTCGCGTACAGGAGGACCACCGAGGGCAGCAGCAGCTACAACGCGATCCTGTCCGTCACCGCGTCCCTGCGTCTGCCGCTGCCCATGAGGAAAACCTTCGATCTGCTCAGGAACCTTACTCACCGCTGCAAGTGGGACGTCCTGGTGCACGGCAGCGTGGTGAAGGAGGAGGTCACCATCGCCAGAGGCGTCGGGAACGACGACACTGTCACCGTCCTCCACTGCAAGCGCGCCGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGGCTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCCCAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCTCCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAG - >LOC_Os01g57890.2
ATGGAAATGAATCAACAGCATAATGAGGGCAACGAATCTTTCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAATTGAGGCCGACTCAGGCTTGTTGCCTGTGAACAGTAGCAACACTAATGAAAAAAGGAAGAGGCGTCTACAGAGGCTCACTGGCAAACAGTCGGAGGTACTTGAGGGGTTTTTCAGCATCTGTGGGCATCCCGATGATGGACAAAAGAGGCATCTGAGTGAGACAACAGGTCTTGGTTTAGATCAAGTGAAGTTTTGGTTTCAGAATAAAAGAACACAAGTAAAGACTATGTGCTGGAAGGAAGAGAACTATAAGTTGTCGGTGGAGAATGAAATTCTGAGGGATGAGAACAGGAGAGTTAAGATAGCTCACTGCACTGCTGTATGCCTCACTTGCTGTAATTCATCAGTACAGAACCAGCTTGCCGTTGAGATGGAAAGGTTAATGGGGCAGAGTGAGTGGCTGCAACAAGAGATTGCACGGTCGAATGGAACACCCCCGGCTGCAAACCTTGCCTTTCAACTTAATTCATCAGCAGACTATGTATTTTCAGGGCAACATGACCAACAAATGATTGCTGAACTAGCCAAAAACGCAATGCACGCATTGATTATTTTGGCCGAATCCCATGTCGCTCTATGGTTTCCCGTCCCTGGCTGTTCTTATGAAGTATTGAACAAGATGGCTTATGACCAAGCATATCCTGGGGATAACAGTGCAAACGCCATTGGATTCAAGACAGAGGCTACTCGTGCAGTTTCTATGGTGATGATGGACTACAAAAGCGTTGTGGATTTCCTCATGGATCCTTACAACTACCGAACTTTCTTTCCTGAAGTTATTTCCGGGGCAGTAACCAACAGGATCTACACGTGGCCTACCAGTGATGGTTATAATGGGGTTATACAACTGATGACTGTCGAGATGATGTTCCCATCGCCCCTGGTACCGGCTAGGAAATGCACATTCCTGCGCTATTGTAATGTGCTGAACGAAGGATTAGTGGTCGTCATTGATGTGTCATTGGACGATGGCAGTATCTTCTCCAAATGCCGTAAAATGCCATCAGGGTTTCTGATCCAATCCATAAGGCCAAACAGCTGCAAGGTCACTGCCATAGAGCACGTCCTTGCGGATGACACCGGTGTTCATGAGCTCTACCAGCCTTGTATGAATGGACTCGTCTTCGGAGCTCGGCGCTGGGTGGCGACCATGGCGCGGCAGTCTGCACGCATGAGAGATGTTCATCACAACAAGACAGCTCCGCAAGTCAGCACGAAGGGGAGGAAGAATCTAATGAAGCTAGCGGACGACCTGCTCGCGAGCTTCGCCGGCGGCATCGCCGCCACTGGCGGAGGAACGTGGACCGTCGTGATCGGCGCCGGCACGGAGAAGGACATCAGGGTCGCGTACAGGAGGACCACCGAGGGCAGCAGCAGCTACAACGCGATCCTGTCCGTCACCGCGTCCCTGCGTCTGCCGCTGCCCATGAGGAAAACCTTCGATCTGCTCAGGAACCTTACTCACCGCTGCAAGTGGGACGTCCTGGTGCACGGCAGCGTGGTGAAGGAGGAGGTCACCATCGCCAGAGGCGTCGGGAACGACGACACTGTCACCGTCCTCCACTGCAAGCGCGCCGGCAGGGAGGACAGGGGAAGGACCATGATCCTGCAGAACAACGGGTACGACGCGTCGGGCTCGTTCATGGTCTACTCCCAGATCGACAGCGAGCTGATGAACACCATGGTCCTGAGCCCCAGCGACCTGCCGCCCGGGCGGGGCGGGCCGTCCCTCTACCCCACCGGCTTCTCCCTTCTCCCTGACGTCGAGGCTGCCCAGGACAGCAGCGGCATCGCCCTCGGCGAGGTTGGGGGAACTCTCATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAGGCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCCACCCCTAG
Protein Sequence
- >LOC_Os01g57890.1
MEMNQQHNEGNESFVALMNGFAGDGTATLPNDGEQRMSIPARELFAAIEADSGLLPVNSSNTNEKRKRRLQRLTGKQSEVLEGFFSICGHPDDGQKRHLSETTGLGLDQVKFWFQNKRTQVKTMCWKEENYKLSVENEILRDENRRVKIAHCTAVCLTCCNSSVQNQLAVEMERLMGQSEWLQQEIARSNGTPPAANLAFQLNSSADYVFSGQHDQQMIAELAKNAMHALIILAESHVALWFPVPGCSYEVLNKMAYDQAYPGDNSANAIGFKTEATRAVSMVMMDYKSVVDFLMDPYNYRTFFPEVISGAVTNRIYTWPTSDGYNGVIQLMTVEMMFPSPLVPARKCTFLRYCNVLNEGLVVVIDVSLDDGSIFSKCRKMPSGFLIQSIRPNSCKVTAIEHVLADDTGVHELYQPCMNGLVFGARRWVATMARQSARMRDVHHNKTAPQVSTKGRKNLMKLADDLLASFAGGIAATGGGTWTVVIGAGTEKDIRVAYRRTTEGSSSYNAILSVTASLRLPLPMRKTFDLLRNLTHRCKWDVLVHGSVVKEEVTIARGVGNDDTVTVLHCKRAGREDRGRTMILQNNGYDASGSFMVYSQIDSELMNTMVLSPSDLPPGRGGPSLYPTGFSLLPDVEAAQDSSGIALGEVGGTLMTMGFQIPVKLASGDRMYSRSAASAIRLMTDTIALVKKTLMNEHSGIYGVSPFHP* - >LOC_Os01g57890.2
MEMNQQHNEGNESFVALMNGFAGDGTATLPNDGEQRMSIPARELFAAIEADSGLLPVNSSNTNEKRKRRLQRLTGKQSEVLEGFFSICGHPDDGQKRHLSETTGLGLDQVKFWFQNKRTQVKTMCWKEENYKLSVENEILRDENRRVKIAHCTAVCLTCCNSSVQNQLAVEMERLMGQSEWLQQEIARSNGTPPAANLAFQLNSSADYVFSGQHDQQMIAELAKNAMHALIILAESHVALWFPVPGCSYEVLNKMAYDQAYPGDNSANAIGFKTEATRAVSMVMMDYKSVVDFLMDPYNYRTFFPEVISGAVTNRIYTWPTSDGYNGVIQLMTVEMMFPSPLVPARKCTFLRYCNVLNEGLVVVIDVSLDDGSIFSKCRKMPSGFLIQSIRPNSCKVTAIEHVLADDTGVHELYQPCMNGLVFGARRWVATMARQSARMRDVHHNKTAPQVSTKGRKNLMKLADDLLASFAGGIAATGGGTWTVVIGAGTEKDIRVAYRRTTEGSSSYNAILSVTASLRLPLPMRKTFDLLRNLTHRCKWDVLVHGSVVKEEVTIARGVGNDDTVTVLHCKRAGREDRGRTMILQNNGYDASGSFMVYSQIDSELMNTMVLSPSDLPPGRGGPSLYPTGFSLLPDVEAAQDSSGIALGEVGGTLMTMGFQIPVKLASGDRMYSRSAASAIRLMTDTIALVKKTLMNEHSGIYGVSPFHP*