Information report for OsGATA6
Gene Details
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Functional Descriptions
- The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.
- Further analyses showed that OsGATA6 could bind to the promoter of OsMFT1 and induce its expression, thereby regulating heading date and panicle development.
- Overexpression of OsGATA6 resulted in delayed heading, increased grain number, and decreased grain size.
- Knockdown lines generated by artificial microRNA (amiRNA) and CRISPR genome-edited lines of OsGATA6 both showed earlier heading, decreased grain number, and increased grain size.
- These results suggested that OsGATA6 negatively regulates heading date, positively regulates panicle development, and affects grain size.
- In situ hybridization analyses showed that OsGATA6 was specifically localized in superficial cells of the panicle primordium.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q8LIZ3
- EMBL: AP014957
- AlphaFoldDB: Q8LIZ3
- EnsemblPlants: Os01t0745700-01
- Gramene: Os01t0745700-01
- KEGG: osa:4326175
- Orthologous matrix: EMHQQTP
- InterPro: IPR000679, IPR013088, IPR016679
- PANTHER: PTHR45658, PTHR45658:SF45
- SUPFAM: SSF57716
- PROSITE: PS00344, PS50114
- Gene3D: 3.30.50.10
- OrthoDB: Q8LIZ3
- SWISS-MODEL: Q8LIZ3
- Conserved Domain Database: cd00202
- eggNOG: KOG1601
Homologs
- Brachypodium distachyon: Bradi2g49620.1.p
- Hordeum vulgare: MLOC_58725.1
- Panicum virgatum: Pavir.5KG547300.1.p, Pavir.5NG492700.1.p
- Setaria italica: Seita.5G315100.1.p
- Setaria viridis: Sevir.5G318000.1.p
- Zea mays: GRMZM2G044576_P01
Sequences
cDNA Sequence
- >LOC_Os01g54210.1
AGCTGACCTCTCTCCGCCCCGCCTCCCCTTCCGTCTCTCCGCGCTCCAGCTCCACGCCAATTAAACCCTACTCCTCTTGCGTTGCGTTATCTGCGGTTCCGTCTCCCACTACTCGCGCACACGTAGAAACGGAAGGAGAAACAAACAAAAGGCGCCGAGTAACGCAGATAGAGAGTTGTTTCCGCACCGAGCGCGTCCGCGGCAGTGTGTGTGTGTAGCGGTAGCGCACGCGCGGCTCGCGGGCGCGCCGGTTGCACCAGCTGTGCGTTGCGGCGACGATGGAGGTGACGGCCGAGTTCGGCGGCGCCTACTACGGCGGCGCGGCGGGCCGCGAGAAGAAGGCGCTGCAGCAGGGGTGCGGGGACCACTTCGCCGTGGACGACCTCCTCGTGTTGCCCTACGGCGAGGAGGATGAAACAACAAGGGAGGGTGAGGCCACCGGCGGTAAGGAGGAGGCTGCCGGCTTTGGGAACGCGTCGGCGGACTCGTCGACCATAACGGCCCTGGATAGCTGCAGCAATTCCTTCGGCCTAGCCGACGGCGACTTCCCCGGCGAGCTGTGCGAGCCGTACGATCAACTCGCGGAGCTGGAATGGCTATCCAACTATATGAACGAGGGAGACGACGCATTCGCCACCGAGGACCTCCAGAAGCTGCAGCTCATCTCCGGCATCCCCTCCGGTGGGTTCTCGACGGCGAGCGTCCCGTCGGCTCAAGCTCAAGCTGCGTCGGCGGCTGCCTCCATGGCAGTGCAGCCCGGCGGCTTCCTGCCGGAGGCCCCTGTCCCCGCCAAGGCACGAAGCAAGCGCTCCCGCGCTGCGCCTGGCAACTGGTCGTCCCGCCTGCTCGTGCTGCCGCCGCCTCCGGCCTCCCCGCCGTCCCCGGCATCCATGGCCATCTCGCCGGCGGAGTCTGGCGTGTCGGCGCATGCGTTCCCTATTAAGAAGCCGTCGAAGCCGGCTAAGAAGAAAGACGCGCCGGCGCCACCGGCGCAGGCGCAGCTCTCGAGCGTGCCGGTGCACTCGGGCGGCTCGGCGCCAGCGGCCGCGGCCGGGGAAGGGAGGCGGTGCCTGCACTGCGAGACTGACAAGACGCCACAGTGGAGGACGGGGCCGATGGGGCCCAAGACACTGTGCAACGCGTGCGGGGTGCGGTACAAGTCCGGGCGACTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCCACCTTCATGGTATCGAAGCACTCCAACTCCCACCGCAAGGTGCTGGAGCTGCGCCGGCAGAAGGAGATGCACCAGCAGACGCCGCATCATCACCAGCCGCAGGTGGCCGCCGCCGGTGGAGTGGGGAGCCTAATGCACATGCAGAGCTCCATGCTGTTCGACGGAGTGTCGCCCGTCGTGAGCGGCGACGACTTCTTGATCCACCACCACCTAAGGACAGACTTCCGGCCGCCCATCTAGAGATGAGTCGTGTGCTAGAATTGATCAATTAGCCCATGAATAATCTAAAAGAAACCCTTGAACCAAAAAAAAAACAGAAGAACTGATATTTTCTTAGGAGTTTCCCCAGTTTTTGTCTCTTTTCCCTTCGTTTAGTTTGTGCGCTTTTGCTCAGCTCGTCGAATTTTTCGTGTCAATTTTGTTTATGATGCTCTTTAAGTTTACCACCTTTTCTAGCCGGGAGTTGATTTCTCTAGCTTCTACTTATCTTCCTCTCTATCTTGCCATTTAATTTGTAACGCATTTCAAGGTACTTAAATCTCTTCTTCC
CDS Sequence
- >LOC_Os01g54210.1
ATGGAGGTGACGGCCGAGTTCGGCGGCGCCTACTACGGCGGCGCGGCGGGCCGCGAGAAGAAGGCGCTGCAGCAGGGGTGCGGGGACCACTTCGCCGTGGACGACCTCCTCGTGTTGCCCTACGGCGAGGAGGATGAAACAACAAGGGAGGGTGAGGCCACCGGCGGTAAGGAGGAGGCTGCCGGCTTTGGGAACGCGTCGGCGGACTCGTCGACCATAACGGCCCTGGATAGCTGCAGCAATTCCTTCGGCCTAGCCGACGGCGACTTCCCCGGCGAGCTGTGCGAGCCGTACGATCAACTCGCGGAGCTGGAATGGCTATCCAACTATATGAACGAGGGAGACGACGCATTCGCCACCGAGGACCTCCAGAAGCTGCAGCTCATCTCCGGCATCCCCTCCGGTGGGTTCTCGACGGCGAGCGTCCCGTCGGCTCAAGCTCAAGCTGCGTCGGCGGCTGCCTCCATGGCAGTGCAGCCCGGCGGCTTCCTGCCGGAGGCCCCTGTCCCCGCCAAGGCACGAAGCAAGCGCTCCCGCGCTGCGCCTGGCAACTGGTCGTCCCGCCTGCTCGTGCTGCCGCCGCCTCCGGCCTCCCCGCCGTCCCCGGCATCCATGGCCATCTCGCCGGCGGAGTCTGGCGTGTCGGCGCATGCGTTCCCTATTAAGAAGCCGTCGAAGCCGGCTAAGAAGAAAGACGCGCCGGCGCCACCGGCGCAGGCGCAGCTCTCGAGCGTGCCGGTGCACTCGGGCGGCTCGGCGCCAGCGGCCGCGGCCGGGGAAGGGAGGCGGTGCCTGCACTGCGAGACTGACAAGACGCCACAGTGGAGGACGGGGCCGATGGGGCCCAAGACACTGTGCAACGCGTGCGGGGTGCGGTACAAGTCCGGGCGACTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCCACCTTCATGGTATCGAAGCACTCCAACTCCCACCGCAAGGTGCTGGAGCTGCGCCGGCAGAAGGAGATGCACCAGCAGACGCCGCATCATCACCAGCCGCAGGTGGCCGCCGCCGGTGGAGTGGGGAGCCTAATGCACATGCAGAGCTCCATGCTGTTCGACGGAGTGTCGCCCGTCGTGAGCGGCGACGACTTCTTGATCCACCACCACCTAAGGACAGACTTCCGGCCGCCCATCTAG
Protein Sequence
- >LOC_Os01g54210.1
MEVTAEFGGAYYGGAAGREKKALQQGCGDHFAVDDLLVLPYGEEDETTREGEATGGKEEAAGFGNASADSSTITALDSCSNSFGLADGDFPGELCEPYDQLAELEWLSNYMNEGDDAFATEDLQKLQLISGIPSGGFSTASVPSAQAQAASAAASMAVQPGGFLPEAPVPAKARSKRSRAAPGNWSSRLLVLPPPPASPPSPASMAISPAESGVSAHAFPIKKPSKPAKKKDAPAPPAQAQLSSVPVHSGGSAPAAAAGEGRRCLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMVSKHSNSHRKVLELRRQKEMHQQTPHHHQPQVAAAGGVGSLMHMQSSMLFDGVSPVVSGDDFLIHHHLRTDFRPPI*