Gene Details:
- MSU gene ID: LOC_Os01g51420
- RAPdb gene ID: Os01g0711500
- Gene Symbol: OsCBL10
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- We observed that variations in the OsCBL10 promoter sequences in these two cultivars might contribute to this divergence in flooding tolerance.
- In summary, our results suggest that the adaptation to flooding stress during rice germination is associated with two different OsCBL10 promoters, which in turn affect OsCBL10 expression in different cultivars and negatively affect OsCIPK15 protein accumulation and its downstream cascade.
Function-related keywords:
Literature:
- Natural variation in the promoter of rice calcineurin B-like protein10 (OsCBL10) affects flooding tolerance during seed germination among rice subspecies . DOI: 10.1111/tpj.13881 ; PMID: 29495079
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os01g51420.1
CAGACCCGCCAATCCGGAAATTCCCCACTTCGACGGCATTACCGCGCCCGCCGCGAGCTGCAACGACGTACGCCGAGGAGGCAGGCCCCCGCCACTCGATGGTTCGCCGCCGGCGGCACGGCCGATGGACTCCTCCCGCTCCTCCAACTCTCTCGATTCGGGGAGCTCTCTGACGCTGGGGGAGCTCGCGTGCGCGGCGCTGATTCCGGTGCTCGCCCTGGTGGACGCGGTCGTGTTCGCGGCGGCGCAATGCTTCCAGAAGCGCCCGCCGGGGCTGCTGCCCGCTACACTCGCCGCCCGCGCGCGCCGCCGCGCCGGTGGCCGCCTCACCTTCCGTGAGCTCGCCGACCTCGCCGACGAGTCCCGCTGCTTCTCGGTGAACGAGGTGGAGGCACTGTACGAGCTCTACAAGAAGATCAGCTGCTCCATCGTCGATGACGGCCTGATCCATAAGGAAGAGCTGCAATTAGCCTTGTTTAGAACACCGGCTGGAAAGAATCTTTTTCTAGATAGAGTTTTTGATCTGTTTGATGAAAAGAAAAATTCTGTTATTGAATTTGAAGAGTTTATTCACGCAATAAGTGTATTTCATCCTAATACTCCTCTTGAAGACAAAATTGATTTTTCATTCAGATTATATGATTTGAGGCAAACCGGTTTCATTGAACGTGAAGAGGTAAAACAAATGGTTGTTGCTACCTTATTGGAGTCAGAGGTGCAGCTGTCTGATGATCTTGTGGAAGCCATACTAGACAAGACATTTGAGGATGCTGACACTGACAAGGATAACAGGATTAGCAAAGAGGAGTGGAAAGCTTTTGTACTGAAGCACCCGTCTGTTATAAAGAAGATGACCCTGCCCACCCTGAAGGACACTACAGCGGCGTTCCCCAGCTTCATTTTCAATACACAAGTTGAAGACTAG
CDS Sequence
- >LOC_Os01g51420.1
ATGGACTCCTCCCGCTCCTCCAACTCTCTCGATTCGGGGAGCTCTCTGACGCTGGGGGAGCTCGCGTGCGCGGCGCTGATTCCGGTGCTCGCCCTGGTGGACGCGGTCGTGTTCGCGGCGGCGCAATGCTTCCAGAAGCGCCCGCCGGGGCTGCTGCCCGCTACACTCGCCGCCCGCGCGCGCCGCCGCGCCGGTGGCCGCCTCACCTTCCGTGAGCTCGCCGACCTCGCCGACGAGTCCCGCTGCTTCTCGGTGAACGAGGTGGAGGCACTGTACGAGCTCTACAAGAAGATCAGCTGCTCCATCGTCGATGACGGCCTGATCCATAAGGAAGAGCTGCAATTAGCCTTGTTTAGAACACCGGCTGGAAAGAATCTTTTTCTAGATAGAGTTTTTGATCTGTTTGATGAAAAGAAAAATTCTGTTATTGAATTTGAAGAGTTTATTCACGCAATAAGTGTATTTCATCCTAATACTCCTCTTGAAGACAAAATTGATTTTTCATTCAGATTATATGATTTGAGGCAAACCGGTTTCATTGAACGTGAAGAGGTAAAACAAATGGTTGTTGCTACCTTATTGGAGTCAGAGGTGCAGCTGTCTGATGATCTTGTGGAAGCCATACTAGACAAGACATTTGAGGATGCTGACACTGACAAGGATAACAGGATTAGCAAAGAGGAGTGGAAAGCTTTTGTACTGAAGCACCCGTCTGTTATAAAGAAGATGACCCTGCCCACCCTGAAGGACACTACAGCGGCGTTCCCCAGCTTCATTTTCAATACACAAGTTGAAGACTAG
Protein Sequence
- >LOC_Os01g51420.1
MDSSRSSNSLDSGSSLTLGELACAALIPVLALVDAVVFAAAQCFQKRPPGLLPATLAARARRRAGGRLTFRELADLADESRCFSVNEVEALYELYKKISCSIVDDGLIHKEELQLALFRTPAGKNLFLDRVFDLFDEKKNSVIEFEEFIHAISVFHPNTPLEDKIDFSFRLYDLRQTGFIEREEVKQMVVATLLESEVQLSDDLVEAILDKTFEDADTDKDNRISKEEWKAFVLKHPSVIKKMTLPTLKDTTAAFPSFIFNTQVED*