Gene Details:
- MSU gene ID: LOC_Os01g49580
- RAPdb gene ID: Os01g0690600
- Gene Symbol: RGN1a
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Natural variation of RGN1a regulates grain number per panicle in japonica rice.
- Furthermore, breeding utilization analysis revealed that the additive effects of the dominant allelic variants of RGN1a and DTH7 played a significant role in increasing the grain number per panicle in japonica rice.
Function-related keywords:
- grain , panicle , grain-number , breeding
Literature:
- Natural variation of RGN1a regulates grain number per panicle in japonica rice . DOI: 10.3389/fpls.2022.1097622 ; PMID: 36589052
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os01g49580.1
ATGGTTCTCCCACCGCGTTTGCTCCTCTTCTTCCTCCTCCTCATCGGCGTCCATGCCTCCGTTTCCCATGGCTCGCCGTCTCTTCCACCCACTTACGACCCTTCCATTTGCTCCAACTTGGACGGGAGTAAGCAGACCCCTTTTATCCAACTCAACGGAGAGAACTATACTATCCTGGAGATCATCTACGACAGTCGCACCATCGTGCTCGCAGACACTGATGCGCTCCGCGGCAGCTGCCCCCGAGTGCGCCACAACGTCACCTTCGGCCAGGCCTACCCGTGGCTTCAATACACCGGCTCCCGTGACAACCTCACCTTCTTCTTCGGCTGCAAACTCAACCTTCCACCACCAATCGATCCAGGGCTGGTTAGTCTTGCAGACAAGCACCAAATCAACTGCAAAGACTTCAGCAACTGGCCTGACAGTGGAGATTCGTTCGTGTTCACCTCCGGCGAGCTCGAGGCACCAGTAGAGTCCGAATTGGCCAGGTGCTGCAGCCAGGTCATCGTCGTGCCGGTAAATGGAAGTGTTCTTAATTCAAGTAACCAGAGTGCGCTGCCAAGTGGTGGATATGGTCAAGTGCTTAAGATGGGGTTCGATCTGGCCTGGAACTCAAGTAAAGATGAACAATGCTACAAGTGCGAGCAATCAAAGGGGCACTGCTCCTATAGCCAGAACAGGGCGTTCCTAGGTTGCTTGTGCTCCGACGGGAAGGTGAGCACCAAGGATTGCAGAAACAACGGTGCCAGCAACTCGTCTGCATTAACCATGCTTCTCTCGCTGTGTCTCCGGCTGCTGCCGCTCCTCCTCGTCTTGGTTGCCGCTTCCCATGGCGATGCTTCCGGCGACACCTACGACACCTCCATGTGCCTGCAGAAACCAACCACCTGCGGGAACGTCAGTATCAGCTACCCGTTCTACTTTGCTACGAAGACGAAAGATATCAACGGGTCCAGCAACTCATACTGCGGATACCCCGGCTTGGCGATCGATTGTGACGACGGCAAGCCCATCCTGCAACTCAACGGCACCGAGAAGTACAAGGTTAACTACATCAACTACGGGAGCATCACCAACGTGTCCCTAGCCGATCTGGAGGTCGTCGACGACAGCAGCGGCTGCCCAAGAGTGGATCACAACGTGACGATCCCACAGATCTCTTGGTTGTTCTTCTCCGGCATATCGGTCGATTACCTCGTCTTCTTTCTCCGCTGCTCCTTCACGACGTTCGCCCCCAAACCGGCAAACTTCAACCCGATCGCCTGCGGAAGCTTCATCAATCTCACTAGACCGTCGTTCGTGTTCCCGGACGAGCTAGTGCCCCCTGGGAACTGGTCGCAGCTTTGTGAGGAAACCTTCGAAGTTCCTGTGCTCAAATATCAACTGATGGAGATGGACTCAAATGGCAATGCATGGAATAACAGTGGATACGCCCAGGTACTTCGTCAGGGATTCCAGTTGTCAGTGAACGAAAGCAGGAGGCCCCCCAATTGTAGCCAGTGCGAAGAGTCCCAAGGACGGTGCGGTTACAGCCAAGCCGGGGAATTCATCGGCTGCTTGTGCCCAAACGGACGAGTGCGCTCTCTCAGGTGCGATCCCAGCGACTTAGCCGGCTATGCTGTAATGGATAAGACTAGATATTCCATTCTGATGCCTTTCTCTGTCCCAAATTTTCTACATGCAAATATAATAGCAGGCACCTCAAGCGTGCTTTTGCTATGTCTACTTTCCTTTGCGTGTTTGTTCGGTCTCAAGAAGTCTAGGTACAGAAGGATTTCAAAGGGAACACCAAGGATTGAGTCCTTCCTACAAAGGAATGGAACCTTACATCCAAAGAGATACACTTACACAGAAGTAAAAAGGATGACAAAATCTTTTGCTGAAAAGCTAGGTCATGGTGGATTTGGTGCTGTTTACAGAGGCAACCTATCTGATGGCCGCCAGGTAGCAGTCAAGATGTTAAAGGACTCCAAGGGTGACGGCGAAGAATTCATCAATGAGGTTGCTAGTATTAGTAGAACTTCTCACGTCAACGTGGTGACTCTGTTAGGATTTTGTTTGCATGGATCCAAAAGGGTTCTGATCTATGAGTATATGCCAAATGGTTCACTTGAAAGATATGCTTTCCGCAATAACTCTGAAGGCGAACATTCATTAACTTGGGAGAAGTTATTTGATGTAGTAGTTGGAATTGCCCGAGGGCTTGAGTATCTTCACCGTGGGTGCAACACCCGTATCGTGCATTTTGATATTAAACCCCACAACATTCTACTTGATCAAGAATTCTGCCCTAAGATCTCAGATTTTGGAATGGCTAAGCTTTGTTCTAACAAAGAGAGTATCATCTCAATAGCCGGTGCAAGAGGAACAATAGGCTATATTGCCCCGGAGGTCTATTCAAAGCAATTTGGAGCAATAAGTAGCAAGTCTGATGTCTATAGCTATGGAATGATGATCCTTGAGATGGTTGGGGCAAGGGAGAGGAACATAGATGCCAATAGTGAATCTAGTAGCCACTATTTCCCACAATGGATTTACGAACATCTAGATGAATATTGCATCAATTCTTCTGAGATTGATGGTGAGACCACAGAGCTTGTAAGAAAGATGGTAGTGGTTGCACTGTGGTGCATACAAGTAGTTCCAACTAACCGCCCAACAATGACTAGAGTCGTTGAAATGCTAGAAGGTAGCACGAGCGGTCTAGAATTGCCACCAAAAGTGCTATTGAGCTGGTAA
CDS Sequence
- >LOC_Os01g49580.1
ATGGTTCTCCCACCGCGTTTGCTCCTCTTCTTCCTCCTCCTCATCGGCGTCCATGCCTCCGTTTCCCATGGCTCGCCGTCTCTTCCACCCACTTACGACCCTTCCATTTGCTCCAACTTGGACGGGAGTAAGCAGACCCCTTTTATCCAACTCAACGGAGAGAACTATACTATCCTGGAGATCATCTACGACAGTCGCACCATCGTGCTCGCAGACACTGATGCGCTCCGCGGCAGCTGCCCCCGAGTGCGCCACAACGTCACCTTCGGCCAGGCCTACCCGTGGCTTCAATACACCGGCTCCCGTGACAACCTCACCTTCTTCTTCGGCTGCAAACTCAACCTTCCACCACCAATCGATCCAGGGCTGGTTAGTCTTGCAGACAAGCACCAAATCAACTGCAAAGACTTCAGCAACTGGCCTGACAGTGGAGATTCGTTCGTGTTCACCTCCGGCGAGCTCGAGGCACCAGTAGAGTCCGAATTGGCCAGGTGCTGCAGCCAGGTCATCGTCGTGCCGGTAAATGGAAGTGTTCTTAATTCAAGTAACCAGAGTGCGCTGCCAAGTGGTGGATATGGTCAAGTGCTTAAGATGGGGTTCGATCTGGCCTGGAACTCAAGTAAAGATGAACAATGCTACAAGTGCGAGCAATCAAAGGGGCACTGCTCCTATAGCCAGAACAGGGCGTTCCTAGGTTGCTTGTGCTCCGACGGGAAGGTGAGCACCAAGGATTGCAGAAACAACGGTGCCAGCAACTCGTCTGCATTAACCATGCTTCTCTCGCTGTGTCTCCGGCTGCTGCCGCTCCTCCTCGTCTTGGTTGCCGCTTCCCATGGCGATGCTTCCGGCGACACCTACGACACCTCCATGTGCCTGCAGAAACCAACCACCTGCGGGAACGTCAGTATCAGCTACCCGTTCTACTTTGCTACGAAGACGAAAGATATCAACGGGTCCAGCAACTCATACTGCGGATACCCCGGCTTGGCGATCGATTGTGACGACGGCAAGCCCATCCTGCAACTCAACGGCACCGAGAAGTACAAGGTTAACTACATCAACTACGGGAGCATCACCAACGTGTCCCTAGCCGATCTGGAGGTCGTCGACGACAGCAGCGGCTGCCCAAGAGTGGATCACAACGTGACGATCCCACAGATCTCTTGGTTGTTCTTCTCCGGCATATCGGTCGATTACCTCGTCTTCTTTCTCCGCTGCTCCTTCACGACGTTCGCCCCCAAACCGGCAAACTTCAACCCGATCGCCTGCGGAAGCTTCATCAATCTCACTAGACCGTCGTTCGTGTTCCCGGACGAGCTAGTGCCCCCTGGGAACTGGTCGCAGCTTTGTGAGGAAACCTTCGAAGTTCCTGTGCTCAAATATCAACTGATGGAGATGGACTCAAATGGCAATGCATGGAATAACAGTGGATACGCCCAGGTACTTCGTCAGGGATTCCAGTTGTCAGTGAACGAAAGCAGGAGGCCCCCCAATTGTAGCCAGTGCGAAGAGTCCCAAGGACGGTGCGGTTACAGCCAAGCCGGGGAATTCATCGGCTGCTTGTGCCCAAACGGACGAGTGCGCTCTCTCAGGTGCGATCCCAGCGACTTAGCCGGCTATGCTGTAATGGATAAGACTAGATATTCCATTCTGATGCCTTTCTCTGTCCCAAATTTTCTACATGCAAATATAATAGCAGGCACCTCAAGCGTGCTTTTGCTATGTCTACTTTCCTTTGCGTGTTTGTTCGGTCTCAAGAAGTCTAGGTACAGAAGGATTTCAAAGGGAACACCAAGGATTGAGTCCTTCCTACAAAGGAATGGAACCTTACATCCAAAGAGATACACTTACACAGAAGTAAAAAGGATGACAAAATCTTTTGCTGAAAAGCTAGGTCATGGTGGATTTGGTGCTGTTTACAGAGGCAACCTATCTGATGGCCGCCAGGTAGCAGTCAAGATGTTAAAGGACTCCAAGGGTGACGGCGAAGAATTCATCAATGAGGTTGCTAGTATTAGTAGAACTTCTCACGTCAACGTGGTGACTCTGTTAGGATTTTGTTTGCATGGATCCAAAAGGGTTCTGATCTATGAGTATATGCCAAATGGTTCACTTGAAAGATATGCTTTCCGCAATAACTCTGAAGGCGAACATTCATTAACTTGGGAGAAGTTATTTGATGTAGTAGTTGGAATTGCCCGAGGGCTTGAGTATCTTCACCGTGGGTGCAACACCCGTATCGTGCATTTTGATATTAAACCCCACAACATTCTACTTGATCAAGAATTCTGCCCTAAGATCTCAGATTTTGGAATGGCTAAGCTTTGTTCTAACAAAGAGAGTATCATCTCAATAGCCGGTGCAAGAGGAACAATAGGCTATATTGCCCCGGAGGTCTATTCAAAGCAATTTGGAGCAATAAGTAGCAAGTCTGATGTCTATAGCTATGGAATGATGATCCTTGAGATGGTTGGGGCAAGGGAGAGGAACATAGATGCCAATAGTGAATCTAGTAGCCACTATTTCCCACAATGGATTTACGAACATCTAGATGAATATTGCATCAATTCTTCTGAGATTGATGGTGAGACCACAGAGCTTGTAAGAAAGATGGTAGTGGTTGCACTGTGGTGCATACAAGTAGTTCCAACTAACCGCCCAACAATGACTAGAGTCGTTGAAATGCTAGAAGGTAGCACGAGCGGTCTAGAATTGCCACCAAAAGTGCTATTGAGCTGGTAA
Protein Sequence
- >LOC_Os01g49580.1
MVLPPRLLLFFLLLIGVHASVSHGSPSLPPTYDPSICSNLDGSKQTPFIQLNGENYTILEIIYDSRTIVLADTDALRGSCPRVRHNVTFGQAYPWLQYTGSRDNLTFFFGCKLNLPPPIDPGLVSLADKHQINCKDFSNWPDSGDSFVFTSGELEAPVESELARCCSQVIVVPVNGSVLNSSNQSALPSGGYGQVLKMGFDLAWNSSKDEQCYKCEQSKGHCSYSQNRAFLGCLCSDGKVSTKDCRNNGASNSSALTMLLSLCLRLLPLLLVLVAASHGDASGDTYDTSMCLQKPTTCGNVSISYPFYFATKTKDINGSSNSYCGYPGLAIDCDDGKPILQLNGTEKYKVNYINYGSITNVSLADLEVVDDSSGCPRVDHNVTIPQISWLFFSGISVDYLVFFLRCSFTTFAPKPANFNPIACGSFINLTRPSFVFPDELVPPGNWSQLCEETFEVPVLKYQLMEMDSNGNAWNNSGYAQVLRQGFQLSVNESRRPPNCSQCEESQGRCGYSQAGEFIGCLCPNGRVRSLRCDPSDLAGYAVMDKTRYSILMPFSVPNFLHANIIAGTSSVLLLCLLSFACLFGLKKSRYRRISKGTPRIESFLQRNGTLHPKRYTYTEVKRMTKSFAEKLGHGGFGAVYRGNLSDGRQVAVKMLKDSKGDGEEFINEVASISRTSHVNVVTLLGFCLHGSKRVLIYEYMPNGSLERYAFRNNSEGEHSLTWEKLFDVVVGIARGLEYLHRGCNTRIVHFDIKPHNILLDQEFCPKISDFGMAKLCSNKESIISIAGARGTIGYIAPEVYSKQFGAISSKSDVYSYGMMILEMVGARERNIDANSESSSHYFPQWIYEHLDEYCINSSEIDGETTELVRKMVVVALWCIQVVPTNRPTMTRVVEMLEGSTSGLELPPKVLLSW*