Gene Details:
- MSU gene ID: LOC_Os01g48690
- RAPdb gene ID: Os01g0678600
- Gene Symbol: ASL1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Map-based cloning revealed that ASL1 encodes PRP S20 (PRPS20), which localizes to the chloroplast.
- The transcript levels of nuclear genes for Chl biosynthesis and chloroplast development were strongly affected in ASL1 mutants; transcripts of some plastid genes for photosynthesis were undetectable.
- This study identifies the first rice PRP mutant, ASL1 (albino seedling lethality1), which exhibits an albino lethal phenotype at the seedling stage.
- ASL1 showed tissue-specific expression, as it was highly expressed in plumule and young seedlings but expressed at much lower levels in other tissues.
Function-related keywords:
Literature:
- Disruption of the rice plastid ribosomal protein s20 leads to chloroplast developmental defects and seedling lethality . DOI: 10.1534/g3.113.007856 ; PMID: 23979931
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os01g48690.1
AAATATGAATCCGCCTTCGACCCAAGCCGACGCACCAGGCTCTGGCTCGTCCCGGATAAGATAACATCATCGGCGAAGGGCACGAAGCGGTGCTCCTCGAGCTCACTCCGCACCGCAGCCATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTGTTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAAGGATGTTTTCAAAGTAATGTACTCAGCGTGAAGGTTTTCTTGCATTA - >LOC_Os01g48690.2
AAATATGAATCCGCCTTCGACCCAAGCCGACGCACCAGGCTCTGGCTCGTCCCGGATAAGATAACATCATCGGCGAAGGGCACGAAGCGGTGCTCCTCGAGCTCACTCCGCACCGCAGCCATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTGTTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAAGGATGTTTTCAAAGTAATGTACTCAGCGTGAAGGTTTTCTTGCATTA
CDS Sequence
- >LOC_Os01g48690.1
ATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAG - >LOC_Os01g48690.2
ATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAG
Protein Sequence
- >LOC_Os01g48690.1
MATATSTLFSLSSLSASLPSPAQPAPASLSLRAVSPRARLSASYAAFPIGGIGAWAAATPASSGRWRRRGLEVVCEAAKTGTATGRRPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVLKALEKLRKKADATPEDIIQIEKWISEAYKAIDKTVKVGAMHRNTGNHRKSLLARRKKAIEILRGWYVPNAEPAATS* - >LOC_Os01g48690.2
MATATSTLFSLSSLSASLPSPAQPAPASLSLRAVSPRARLSASYAAFPIGGIGAWAAATPASSGRWRRRGLEVVCEAAKTGTATGRRPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVLKALEKLRKKADATPEDIIQIEKWISEAYKAIDKTVKVGAMHRNTGNHRKSLLARRKKAIEILRGWYVPNAEPAATS*