Information report for ASL1
Gene Details
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Functional Descriptions
- Map-based cloning revealed that ASL1 encodes PRP S20 (PRPS20), which localizes to the chloroplast.
- The transcript levels of nuclear genes for Chl biosynthesis and chloroplast development were strongly affected in ASL1 mutants; transcripts of some plastid genes for photosynthesis were undetectable.
- This study identifies the first rice PRP mutant, ASL1 (albino seedling lethality1), which exhibits an albino lethal phenotype at the seedling stage.
- ASL1 showed tissue-specific expression, as it was highly expressed in plumule and young seedlings but expressed at much lower levels in other tissues.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q0JKF5
- EMBL: AK063019, AK120629, AP014957
- AlphaFoldDB: Q0JKF5
- EnsemblPlants: Os01t0678600-01
- Gramene: Os01t0678600-01
- Orthologous matrix: REVAYPP
- InterPro: IPR002583, IPR036510
- PANTHER: PTHR33398, PTHR33398:SF1
- SUPFAM: SSF46992
- Gene3D: 1.20.58.110
- OrthoDB: Q0JKF5
- SWISS-MODEL: Q0JKF5
- eggNOG: ENOG502RXSZ
Sequences
cDNA Sequence
- >LOC_Os01g48690.1
AAATATGAATCCGCCTTCGACCCAAGCCGACGCACCAGGCTCTGGCTCGTCCCGGATAAGATAACATCATCGGCGAAGGGCACGAAGCGGTGCTCCTCGAGCTCACTCCGCACCGCAGCCATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTGTTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAAGGATGTTTTCAAAGTAATGTACTCAGCGTGAAGGTTTTCTTGCATTA - >LOC_Os01g48690.2
AAATATGAATCCGCCTTCGACCCAAGCCGACGCACCAGGCTCTGGCTCGTCCCGGATAAGATAACATCATCGGCGAAGGGCACGAAGCGGTGCTCCTCGAGCTCACTCCGCACCGCAGCCATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTGTTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAAGGATGTTTTCAAAGTAATGTACTCAGCGTGAAGGTTTTCTTGCATTA
CDS Sequence
- >LOC_Os01g48690.1
ATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAG - >LOC_Os01g48690.2
ATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAG
Protein Sequence
- >LOC_Os01g48690.1
MATATSTLFSLSSLSASLPSPAQPAPASLSLRAVSPRARLSASYAAFPIGGIGAWAAATPASSGRWRRRGLEVVCEAAKTGTATGRRPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVLKALEKLRKKADATPEDIIQIEKWISEAYKAIDKTVKVGAMHRNTGNHRKSLLARRKKAIEILRGWYVPNAEPAATS* - >LOC_Os01g48690.2
MATATSTLFSLSSLSASLPSPAQPAPASLSLRAVSPRARLSASYAAFPIGGIGAWAAATPASSGRWRRRGLEVVCEAAKTGTATGRRPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVLKALEKLRKKADATPEDIIQIEKWISEAYKAIDKTVKVGAMHRNTGNHRKSLLARRKKAIEILRGWYVPNAEPAATS*