Information report for OsRH2
Gene Details
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Functional Descriptions
- Amino acid sequence analysis indicated that OsRH2 and OsRH34 had 99 % identity and 100 % similarity, and their gene expression patterns were similar in various rice tissues, but the level of OsRH2 mRNA was about 58-fold higher than that of OsRH34 mRNA in seedlings.
- Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.
- The phenotypes of three independent OsRH2 and OsRH34 double-knockdown transgenic lines included dwarfism, a short internode distance, reproductive delay, defective embryonic development, and a low seed setting rate.
- Both OsRH2 and OsRH34 are core components of the EJC, and participate in regulating of plant height, pollen, and seed development in rice.
- In addition, the OsRH2 and OsRH34 double-knockdown transgenic lines exhibited the accumulation of unspliced rice UNDEVELOPED TAPETUM 1 mRNA.
Functional Keywords
- seedlings , growth , seed , development , reproductive , plant-height , tapetum , seed-development
Literature and News
Gene Resources
- UniProt: Q5VNM3
- EMBL: AK073640, AP003607, AP004367
- AlphaFoldDB: Q5VNM3
- EnsemblPlants: Os01t0639100-01
- Gramene: Os01t0639100-01
- KEGG: dosa:Os01g0639100
- Orthologous matrix: TRFHDFK
- InterPro: IPR000629, IPR001650, IPR011545
Sequences
cDNA Sequence
- >LOC_Os01g45190.1
GTCCACCCCTCACCTCCTTCCCCCATCTCTTCTCTAGTTCTCTTCTCTTTCTAGGGTTTCGTCTCCCCCAATGGCGGCGGCCACCACGTCGCGGCGCGGCCCGGGCGCCATGGACGACGAGAACCTCACCTTCGAGACCTCCCCGGGGGTCGAGGTCATCAGCAGCTTCGACCAGATGGGGATCCGCGACGACCTCCTCCGCGGCATCTACGCCTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAGCGCGCCGTCCTCCCCATCATCAGCGGCCGCGACGTCATCGCCCAGGCCCAGTCCGGGACCGGCAAGACCTCCATGATCTCGCTCTCCGTCTGCCAGATCGTAGACACCGCCGTCCGTGAGGTGCAGGCTTTAATACTGTCACCAACTAGAGAACTTGCTGCACAAACAGAAAGAGTTATGCTGGCTATCGGTGACTTCATCAATATCCAAGTGCATGCTTGTATTGGTGGCAAAAGTATTGGTGAGGATATTAGAAAGCTTGAGCACGGAGTGCATGTGGTGTCAGGAACACCTGGCAGAGTCTGTGATATGATCAAGAGAAGGACCTTGCGTACAAGAGCCATTAAGCTCCTAATTCTGGATGAAGCTGATGAGATGTTGGGCAGAGGCTTTAAGGATCAGATATATGATGTGTACAGATACCTCCCTCCAGAACTCCAGGTTTGCTTGATCTCCGCAACTCTGCCTCACGAGATCTTGGAAATGACCAGCAAGTTCATGACTGATCCAGTTCGGATCCTTGTGAAGCGTGATGAATTGACTCTAGAGGGCATCAAACAATTCTTTGTTGCTGTTGAGAAAGAAGAATGGAAGTTTGACACGCTTTGTGATCTTTATGATACACTGACAATCACCCAAGCTGTCATTTTCTGCAACACAAAGAGAAAGGTTGATTGGCTTACGGAAAGAATGCGCAGCAATAACTTCACAGTATCAGCTATGCATGGCGACATGCCTCAAAAGGAAAGGGATGCCATTATGGGTGAATTCAGGTCTGGTGCAACCCGTGTTCTAATCACGACAGATGTGTGGGCTCGAGGCCTCGATGTTCAGCAGGTCTCTCTTGTCATAAATTATGATCTCCCAAATAATCGTGAACTTTACATCCATCGCATTGGTCGCTCTGGACGTTTTGGTCGCAAGGGTGTGGCCATCAATTTTGTCAAAAAGGAAGACATCCGTATCCTGAGAGATATCGAGCAGTACTACAGCACGCAGATTGATGAAATGCCAATGAATGTTGCTGATCTAATTTGAGTGCTGGAGTGGCGCTACCATGTTTGATCATCTGGTCTGGCAACAACTGAGCTTGTTTGTTGTGATTTTGGTTGACATGCTTTGCCGTGACTGTATTGCTATGGACTTTAAAGGGTTGCGAGTCTAATACTAGTGATTGGTTTCGTTCCCCTCTCTTGTGACATGATCTGTATATAATTTTAGTGCCAGCTCATGTAACACTATGATTGCATTTCTGCTCAGAACATGAGACTTGTTCGTTATATTTATTGCCACAAGGATTTGATGATGATTTTCTCGTTGAAGGTGTGGTGGTATTTAGATCTTCTGTGTGTTGTGATCTCAAATGTTTTTGTCAAAGTGTTTCATTTGCTCCA - >LOC_Os01g45190.3
GTCCACCCCTCACCTCCTTCCCCCATCTCTTCTCTAGTTCTCTTCTCTTTCTAGGGTTTCGTCTCCCCCAATGGCGGCGGCCACCACGTCGCGGCGCGGCCCGGGCGCCATGGACGACGAGAACCTCACCTTCGAGACCTCCCCGGGGGTCGAGGTCATCAGCAGCTTCGACCAGATGGGGATCCGCGACGACCTCCTCCGCGGCATCTACGCCTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAGCGCGCCGTCCTCCCCATCATCAGCGGCCGCGACGTCATCGCCCAGGCCCAGTCCGGGACCGGCAAGACCTCCATGATCTCGCTCTCCGTCTGCCAGATCGTAGACACCGCCGTCCGTGAGGTGCAGGCTTTAATACTGTCACCAACTAGAGAACTTGCTGCACAAACAGAAAGAGTTATGCTGGCTATCGGTGACTTCATCAATATCCAAGTGCATGCTTGTATTGGTGGCAAAAGTATTGGTGAGGATATTAGAAAGCTTGAGCACGGAGTGCATGTGGTGTCAGGAACACCTGGCAGAGTCTGTGATATGATCAAGAGAAGGACCTTGCGTACAAGAGCCATTAAGCTCCTAATTCTGGATGAAGCTGATGAGATGTTGGGCAGAGGCTTTAAGGATCAGATATATGATGTGTACAGATACCTCCCTCCAGAACTCCAGGTTTGCTTGATCTCCGCAACTCTGCCTCACGAGATCTTGGAAATGACCAGCAAGTTCATGACTGATCCAGTTCGGATCCTTGTGAAGCGTGATGAATTGACTCTAGAGGGCATCAAACAATTCTTTGTTGCTGTTGAGAAAGAAGAATGGAAGTTTGACACGCTTTGTGATCTTTATGATACACTGACAATCACCCAAGCTGTCATTTTCTGCAACACAAAGAGAAAGGTTGATTGGCTTACGGAAAGAATGCGCAGCAATAACTTCACAGTATCAGCTATGCATGGCGACATGCCTCAAAAGGAAAGGGATGCCATTATGGGTGAATTCAGGTCTGGTGCAACCCGTGTTCTAATCACGACAGATGTGTGGGCTCGAGGCCTCGATGTTCAGCAGGTCTCTCTTGTCATAAATTATGATCTCCCAAATAATCGTGAACTTTACATCCATCGCATTGGTCGCTCTGGACGTTTTGGTCGCAAGGGTGTGGCCATCAATTTTGTCAAAAAGGAAGACATCCGTATCCTGAGAGATATCGAGCAGTACTACAGCACGCAGATTGATGAAATGCCAATGAATGTTGCTGATCTAATTTGAGTGCTGGAGTGGCGCTACCATGTTTGATCATCTGGTCTGGCAACAACTGAGCTTGTTTGTTGTGATTTTGGTTGACATGCTTTGCCGTGACTGTATTGCTATGGACTTTAAAGGGTTGCGAGTCTAATACTAGTGATTGGTTTCGTTCCCCTCTCTTGTGACATGATCTGTATATAATTTTAGTGCCAGCTCATGTAACACTATGATTGCATTTCTGCTCAGAACATGAGACTTGTTCGTTATATTTATTGCCACAAGGATTTGATGATGATTTTCTCGTTGAAGGTGTGGTGGTATTTAGATCTTCTGTGTGTTGTGATCTCAAATGTTTTTGTCAAAGTGTTTCATTTGCTCCA
CDS Sequence
- >LOC_Os01g45190.1
ATGGCGGCGGCCACCACGTCGCGGCGCGGCCCGGGCGCCATGGACGACGAGAACCTCACCTTCGAGACCTCCCCGGGGGTCGAGGTCATCAGCAGCTTCGACCAGATGGGGATCCGCGACGACCTCCTCCGCGGCATCTACGCCTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAGCGCGCCGTCCTCCCCATCATCAGCGGCCGCGACGTCATCGCCCAGGCCCAGTCCGGGACCGGCAAGACCTCCATGATCTCGCTCTCCGTCTGCCAGATCGTAGACACCGCCGTCCGTGAGGTGCAGGCTTTAATACTGTCACCAACTAGAGAACTTGCTGCACAAACAGAAAGAGTTATGCTGGCTATCGGTGACTTCATCAATATCCAAGTGCATGCTTGTATTGGTGGCAAAAGTATTGGTGAGGATATTAGAAAGCTTGAGCACGGAGTGCATGTGGTGTCAGGAACACCTGGCAGAGTCTGTGATATGATCAAGAGAAGGACCTTGCGTACAAGAGCCATTAAGCTCCTAATTCTGGATGAAGCTGATGAGATGTTGGGCAGAGGCTTTAAGGATCAGATATATGATGTGTACAGATACCTCCCTCCAGAACTCCAGGTTTGCTTGATCTCCGCAACTCTGCCTCACGAGATCTTGGAAATGACCAGCAAGTTCATGACTGATCCAGTTCGGATCCTTGTGAAGCGTGATGAATTGACTCTAGAGGGCATCAAACAATTCTTTGTTGCTGTTGAGAAAGAAGAATGGAAGTTTGACACGCTTTGTGATCTTTATGATACACTGACAATCACCCAAGCTGTCATTTTCTGCAACACAAAGAGAAAGGTTGATTGGCTTACGGAAAGAATGCGCAGCAATAACTTCACAGTATCAGCTATGCATGGCGACATGCCTCAAAAGGAAAGGGATGCCATTATGGGTGAATTCAGGTCTGGTGCAACCCGTGTTCTAATCACGACAGATGTGTGGGCTCGAGGCCTCGATGTTCAGCAGGTCTCTCTTGTCATAAATTATGATCTCCCAAATAATCGTGAACTTTACATCCATCGCATTGGTCGCTCTGGACGTTTTGGTCGCAAGGGTGTGGCCATCAATTTTGTCAAAAAGGAAGACATCCGTATCCTGAGAGATATCGAGCAGTACTACAGCACGCAGATTGATGAAATGCCAATGAATGTTGCTGATCTAATTTGA - >LOC_Os01g45190.3
ATGGCGGCGGCCACCACGTCGCGGCGCGGCCCGGGCGCCATGGACGACGAGAACCTCACCTTCGAGACCTCCCCGGGGGTCGAGGTCATCAGCAGCTTCGACCAGATGGGGATCCGCGACGACCTCCTCCGCGGCATCTACGCCTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAGCGCGCCGTCCTCCCCATCATCAGCGGCCGCGACGTCATCGCCCAGGCCCAGTCCGGGACCGGCAAGACCTCCATGATCTCGCTCTCCGTCTGCCAGATCGTAGACACCGCCGTCCGTGAGGTGCAGGCTTTAATACTGTCACCAACTAGAGAACTTGCTGCACAAACAGAAAGAGTTATGCTGGCTATCGGTGACTTCATCAATATCCAAGTGCATGCTTGTATTGGTGGCAAAAGTATTGGTGAGGATATTAGAAAGCTTGAGCACGGAGTGCATGTGGTGTCAGGAACACCTGGCAGAGTCTGTGATATGATCAAGAGAAGGACCTTGCGTACAAGAGCCATTAAGCTCCTAATTCTGGATGAAGCTGATGAGATGTTGGGCAGAGGCTTTAAGGATCAGATATATGATGTGTACAGATACCTCCCTCCAGAACTCCAGGTTTGCTTGATCTCCGCAACTCTGCCTCACGAGATCTTGGAAATGACCAGCAAGTTCATGACTGATCCAGTTCGGATCCTTGTGAAGCGTGATGAATTGACTCTAGAGGGCATCAAACAATTCTTTGTTGCTGTTGAGAAAGAAGAATGGAAGTTTGACACGCTTTGTGATCTTTATGATACACTGACAATCACCCAAGCTGTCATTTTCTGCAACACAAAGAGAAAGGTTGATTGGCTTACGGAAAGAATGCGCAGCAATAACTTCACAGTATCAGCTATGCATGGCGACATGCCTCAAAAGGAAAGGGATGCCATTATGGGTGAATTCAGGTCTGGTGCAACCCGTGTTCTAATCACGACAGATGTGTGGGCTCGAGGCCTCGATGTTCAGCAGGTCTCTCTTGTCATAAATTATGATCTCCCAAATAATCGTGAACTTTACATCCATCGCATTGGTCGCTCTGGACGTTTTGGTCGCAAGGGTGTGGCCATCAATTTTGTCAAAAAGGAAGACATCCGTATCCTGAGAGATATCGAGCAGTACTACAGCACGCAGATTGATGAAATGCCAATGAATGTTGCTGATCTAATTTGA
Protein Sequence
- >LOC_Os01g45190.1
MAAATTSRRGPGAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI* - >LOC_Os01g45190.3
MAAATTSRRGPGAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI*