Information report for OsPDF1B
Gene Details
|
|
Functional Descriptions
- OsPDF1A is more strongly expressed in the roots, while OsPDF1B is expressed at higher levels in mature leaves.
- Transient expression of PDF-green fluorescent protein (GFP) fusion proteins in the protoplasts demonstrates that, unlike OsPDF1A, OsPDF1B is localized in both the chloroplasts and the mitochondria.
- Based on these results, we conclude that OsPDF1B is essential for the development of chloroplast and perhaps mitochondria.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q5VNN5
- EMBL: AK106980, AP003607, AP004367
- AlphaFoldDB: Q5VNN5
- EnsemblPlants: Os01t0637600-01
- Gramene: Os01t0637600-01
- KEGG: dosa:Os01g0637600
- Orthologous matrix: CAAWLQP
- InterPro: IPR023635, IPR036821
- PANTHER: PTHR10458, PTHR10458:SF22
- SUPFAM: SSF56420
- Gene3D: 3.90.45.10
- OrthoDB: Q5VNN5
- SWISS-MODEL: Q5VNN5
- Conserved Domain Database: cd00487
- eggNOG: KOG3137
Sequences
cDNA Sequence
- >LOC_Os01g45070.1
ACCGCCCAATCGCTGCCGCGTGCGGGGGAAAAAATCGTCGACTCCCCCACCACCATGGCCGCGCGCCTTCACCTCCGCCTCGGCCCCCGCCTCCGCGGGTTCGCGTCCTCCTTCGCCCCCCTCCTCGCCGCGCACCCCAGAGCGCTGCCCCTCTCCCGCATGGGCTCGGTGGCGCCTCTCGCGGCGGCACGCGCCCGCCGCGGCTTCGGTTCCGCCGTCGCCACCGCGCCGCCGGCCGAGGACGAGGACTTCGCCACAGCTGCTGACCTCCAGTTCGAGCCGCCGCTCAAGGTCGTGAAGTACCCCGACCCAATCCTACGGGCTCGCAACAAGCGCATCAACACCTTCGATGACAACCTCCGCAGCCTCACTGATGAGATGTTCGACGTTATGTACAAGACTGATGGAATTGGTCTCTCTGCACCACAAGTTGGGGTGAATGTACAGCTTATGGTATTTAATCCAGCTGGTGTGAAGGGAGAAGGAGAGGAGATTGTCCTTGTCAACCCGGTTGTATACAAAATGTCGAAGAGATTGTTAGTGTATGAGGAAGGCTGCTTATCATTCCCTGGGATATATGCCAATGTGGTGAGACCAGACAATGTCAAAATTGATGCTCAGGATGTTACAGGGGCAAAGATTAAAGTTAAATTGTCAGGTCTGTCTGCAAGAGTTTTCCAACATGAATTTGATCATTTACAGGGGATTCTTTTCTTTGACAGGATGTCTCTTGATGTTCTTGAGAGCGTGCGTGAGGGACTGAAGGACCTAGAGAAGAAATATGAGGAAAGTACAGGGCTAGTAAGCCCTGAAAGTATTGAGAACTACAAAGGAAGAAAGGATCTCATTAGTTTCTCAAGATGAATAGCTTTCGGTTCTGGCAGTTTTTCAAAACATCCTGCTGAGCTTCACATTGAAGATTGTGTATTAGAACAGTTGCCAGTATCACATATTCTTCTGTCATTCTACTTTTTGCCAGTCTTGCTGTATCTAGTTTTGTGCAACACCAGTGATATTACAACCAGAAATTATGCTAGTGATGAATGAGCTGTATTTCCTAAGAAGGAATATGTGAACAATATTAGTGTTTGCATATATATGATTTTTTAGAAGATACTGTACTTTATCATTTTTCACAAAATTGTTCATGTAATGGCCTCTTCTCTCAAACTATATTTAGGGAAAAAAATCCTAATTGAGCAAAA - >LOC_Os01g45070.2
ACCGCCCAATCGCTGCCGCGTGCGGGGGAAAAAATCGTCGACTCCCCCACCACCATGGCCGCGCGCCTTCACCTCCGCCTCGGCCCCCGCCTCCGCGGGTTCGCGTCCTCCTTCGCCCCCCTCCTCGCCGCGCACCCCAGAGCGCTGCCCCTCTCCCGCATGGGCTCGGTGGCGCCTCTCGCGGCGGCACGCGCCCGCCGCGGCTTCGGTTCCGCCGTCGCCACCGCGCCGCCGGCCGAGGACGAGGACTTCGCCACAGCTGCTGACCTCCAGTTCGAGCCGCCGCTCAAGGTCGTGAAGTACCCCGACCCAATCCTACGGGCTCGCAACAAGCGCATCAACACCTTCGATGACAACCTCCGCAGCCTCACTGATGAGATGTTCGACGTTATGTACAAGACTGATGGAATTGGTCTCTCTGCACCACAAGTTGGGGTGAATGTACAGCTTATGGTATTTAATCCAGCTGGTGTGAAGGGAGAAGGAGAGGAGATTGTCCTTGTCAACCCGGTTGTATACAAAATGTCGAAGAGATTGTTAGTGTATGAGGAAGGCTGCTTATCATTCCCTGGGATATATGCCAATGTGGTGAGACCAGACAATGTCAAAATTGATGCTCAGGATGTTACAGGGGCAAAGATTAAAGTTAAATTGTCAGGTCTGTCTGCAAGAGTTTTCCAACATGAATTTGATCATTTACAGGGGATTCTTTTCTTTGACAGGATGTCTCTTGATGTTCTTGAGAGCGTGCGTGAGGGACTGAAGGACCTAGAGAAGAAATATGAGGAAAGTACAGGGCTAGTAAGCCCTGAAAGTATTGAGAACTACAAAGGAAGAAAGGATCTCATTAGTTTCTCAAGATGAATAGCTTTCGGTTCTGGCAGTTTTTCAAAACATCCTGCTGAGCTTCACATTGAAGATTGTGTATTAGAACAGTTGCCAGTATCACATATTCTTCTGTCATTCTACTTTTTGCCAGTCTTGCTGTATCTAGTTTTGTGCAACACCAGTGATATTACAACCAGAAATTATGCTAGTGATGAATGAGCTGTATTTCCTAAGAAGGAATATGTGAACAATATTAGTGTTTGCATATATATGATTTTTTAGAAGATACTGTACTTTATCATTTTTCACAAAATTGTTCATGTAATGGCCTCTTCTCTCAAACTATATTTAGGGAAAAAAATCCTAATTGAGCAAAA
CDS Sequence
- >LOC_Os01g45070.1
ATGGCCGCGCGCCTTCACCTCCGCCTCGGCCCCCGCCTCCGCGGGTTCGCGTCCTCCTTCGCCCCCCTCCTCGCCGCGCACCCCAGAGCGCTGCCCCTCTCCCGCATGGGCTCGGTGGCGCCTCTCGCGGCGGCACGCGCCCGCCGCGGCTTCGGTTCCGCCGTCGCCACCGCGCCGCCGGCCGAGGACGAGGACTTCGCCACAGCTGCTGACCTCCAGTTCGAGCCGCCGCTCAAGGTCGTGAAGTACCCCGACCCAATCCTACGGGCTCGCAACAAGCGCATCAACACCTTCGATGACAACCTCCGCAGCCTCACTGATGAGATGTTCGACGTTATGTACAAGACTGATGGAATTGGTCTCTCTGCACCACAAGTTGGGGTGAATGTACAGCTTATGGTATTTAATCCAGCTGGTGTGAAGGGAGAAGGAGAGGAGATTGTCCTTGTCAACCCGGTTGTATACAAAATGTCGAAGAGATTGTTAGTGTATGAGGAAGGCTGCTTATCATTCCCTGGGATATATGCCAATGTGGTGAGACCAGACAATGTCAAAATTGATGCTCAGGATGTTACAGGGGCAAAGATTAAAGTTAAATTGTCAGGTCTGTCTGCAAGAGTTTTCCAACATGAATTTGATCATTTACAGGGGATTCTTTTCTTTGACAGGATGTCTCTTGATGTTCTTGAGAGCGTGCGTGAGGGACTGAAGGACCTAGAGAAGAAATATGAGGAAAGTACAGGGCTAGTAAGCCCTGAAAGTATTGAGAACTACAAAGGAAGAAAGGATCTCATTAGTTTCTCAAGATGA - >LOC_Os01g45070.2
ATGGCCGCGCGCCTTCACCTCCGCCTCGGCCCCCGCCTCCGCGGGTTCGCGTCCTCCTTCGCCCCCCTCCTCGCCGCGCACCCCAGAGCGCTGCCCCTCTCCCGCATGGGCTCGGTGGCGCCTCTCGCGGCGGCACGCGCCCGCCGCGGCTTCGGTTCCGCCGTCGCCACCGCGCCGCCGGCCGAGGACGAGGACTTCGCCACAGCTGCTGACCTCCAGTTCGAGCCGCCGCTCAAGGTCGTGAAGTACCCCGACCCAATCCTACGGGCTCGCAACAAGCGCATCAACACCTTCGATGACAACCTCCGCAGCCTCACTGATGAGATGTTCGACGTTATGTACAAGACTGATGGAATTGGTCTCTCTGCACCACAAGTTGGGGTGAATGTACAGCTTATGGTATTTAATCCAGCTGGTGTGAAGGGAGAAGGAGAGGAGATTGTCCTTGTCAACCCGGTTGTATACAAAATGTCGAAGAGATTGTTAGTGTATGAGGAAGGCTGCTTATCATTCCCTGGGATATATGCCAATGTGGTGAGACCAGACAATGTCAAAATTGATGCTCAGGATGTTACAGGGGCAAAGATTAAAGTTAAATTGTCAGGTCTGTCTGCAAGAGTTTTCCAACATGAATTTGATCATTTACAGGGGATTCTTTTCTTTGACAGGATGTCTCTTGATGTTCTTGAGAGCGTGCGTGAGGGACTGAAGGACCTAGAGAAGAAATATGAGGAAAGTACAGGGCTAGTAAGCCCTGAAAGTATTGAGAACTACAAAGGAAGAAAGGATCTCATTAGTTTCTCAAGATGA
Protein Sequence
- >LOC_Os01g45070.1
MAARLHLRLGPRLRGFASSFAPLLAAHPRALPLSRMGSVAPLAAARARRGFGSAVATAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYEESTGLVSPESIENYKGRKDLISFSR* - >LOC_Os01g45070.2
MAARLHLRLGPRLRGFASSFAPLLAAHPRALPLSRMGSVAPLAAARARRGFGSAVATAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYEESTGLVSPESIENYKGRKDLISFSR*