Gene Details:
- MSU gene ID: LOC_Os01g45070
- RAPdb gene ID: Os01g0637600
- Gene Symbol: OsPDF1B
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- OsPDF1A is more strongly expressed in the roots, while OsPDF1B is expressed at higher levels in mature leaves.
- Transient expression of PDF-green fluorescent protein (GFP) fusion proteins in the protoplasts demonstrates that, unlike OsPDF1A, OsPDF1B is localized in both the chloroplasts and the mitochondria.
- Based on these results, we conclude that OsPDF1B is essential for the development of chloroplast and perhaps mitochondria.
Function-related keywords:
Literature:
- Rice peptide deformylase PDF1B is crucial for development of chloroplasts . DOI: 10.1093/pcp/pcn121 ; PMID: 18718933
Related News:
Gene Resources:
- NCBI ID: EU213046
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os01g45070.1
ACCGCCCAATCGCTGCCGCGTGCGGGGGAAAAAATCGTCGACTCCCCCACCACCATGGCCGCGCGCCTTCACCTCCGCCTCGGCCCCCGCCTCCGCGGGTTCGCGTCCTCCTTCGCCCCCCTCCTCGCCGCGCACCCCAGAGCGCTGCCCCTCTCCCGCATGGGCTCGGTGGCGCCTCTCGCGGCGGCACGCGCCCGCCGCGGCTTCGGTTCCGCCGTCGCCACCGCGCCGCCGGCCGAGGACGAGGACTTCGCCACAGCTGCTGACCTCCAGTTCGAGCCGCCGCTCAAGGTCGTGAAGTACCCCGACCCAATCCTACGGGCTCGCAACAAGCGCATCAACACCTTCGATGACAACCTCCGCAGCCTCACTGATGAGATGTTCGACGTTATGTACAAGACTGATGGAATTGGTCTCTCTGCACCACAAGTTGGGGTGAATGTACAGCTTATGGTATTTAATCCAGCTGGTGTGAAGGGAGAAGGAGAGGAGATTGTCCTTGTCAACCCGGTTGTATACAAAATGTCGAAGAGATTGTTAGTGTATGAGGAAGGCTGCTTATCATTCCCTGGGATATATGCCAATGTGGTGAGACCAGACAATGTCAAAATTGATGCTCAGGATGTTACAGGGGCAAAGATTAAAGTTAAATTGTCAGGTCTGTCTGCAAGAGTTTTCCAACATGAATTTGATCATTTACAGGGGATTCTTTTCTTTGACAGGATGTCTCTTGATGTTCTTGAGAGCGTGCGTGAGGGACTGAAGGACCTAGAGAAGAAATATGAGGAAAGTACAGGGCTAGTAAGCCCTGAAAGTATTGAGAACTACAAAGGAAGAAAGGATCTCATTAGTTTCTCAAGATGAATAGCTTTCGGTTCTGGCAGTTTTTCAAAACATCCTGCTGAGCTTCACATTGAAGATTGTGTATTAGAACAGTTGCCAGTATCACATATTCTTCTGTCATTCTACTTTTTGCCAGTCTTGCTGTATCTAGTTTTGTGCAACACCAGTGATATTACAACCAGAAATTATGCTAGTGATGAATGAGCTGTATTTCCTAAGAAGGAATATGTGAACAATATTAGTGTTTGCATATATATGATTTTTTAGAAGATACTGTACTTTATCATTTTTCACAAAATTGTTCATGTAATGGCCTCTTCTCTCAAACTATATTTAGGGAAAAAAATCCTAATTGAGCAAAA - >LOC_Os01g45070.2
ACCGCCCAATCGCTGCCGCGTGCGGGGGAAAAAATCGTCGACTCCCCCACCACCATGGCCGCGCGCCTTCACCTCCGCCTCGGCCCCCGCCTCCGCGGGTTCGCGTCCTCCTTCGCCCCCCTCCTCGCCGCGCACCCCAGAGCGCTGCCCCTCTCCCGCATGGGCTCGGTGGCGCCTCTCGCGGCGGCACGCGCCCGCCGCGGCTTCGGTTCCGCCGTCGCCACCGCGCCGCCGGCCGAGGACGAGGACTTCGCCACAGCTGCTGACCTCCAGTTCGAGCCGCCGCTCAAGGTCGTGAAGTACCCCGACCCAATCCTACGGGCTCGCAACAAGCGCATCAACACCTTCGATGACAACCTCCGCAGCCTCACTGATGAGATGTTCGACGTTATGTACAAGACTGATGGAATTGGTCTCTCTGCACCACAAGTTGGGGTGAATGTACAGCTTATGGTATTTAATCCAGCTGGTGTGAAGGGAGAAGGAGAGGAGATTGTCCTTGTCAACCCGGTTGTATACAAAATGTCGAAGAGATTGTTAGTGTATGAGGAAGGCTGCTTATCATTCCCTGGGATATATGCCAATGTGGTGAGACCAGACAATGTCAAAATTGATGCTCAGGATGTTACAGGGGCAAAGATTAAAGTTAAATTGTCAGGTCTGTCTGCAAGAGTTTTCCAACATGAATTTGATCATTTACAGGGGATTCTTTTCTTTGACAGGATGTCTCTTGATGTTCTTGAGAGCGTGCGTGAGGGACTGAAGGACCTAGAGAAGAAATATGAGGAAAGTACAGGGCTAGTAAGCCCTGAAAGTATTGAGAACTACAAAGGAAGAAAGGATCTCATTAGTTTCTCAAGATGAATAGCTTTCGGTTCTGGCAGTTTTTCAAAACATCCTGCTGAGCTTCACATTGAAGATTGTGTATTAGAACAGTTGCCAGTATCACATATTCTTCTGTCATTCTACTTTTTGCCAGTCTTGCTGTATCTAGTTTTGTGCAACACCAGTGATATTACAACCAGAAATTATGCTAGTGATGAATGAGCTGTATTTCCTAAGAAGGAATATGTGAACAATATTAGTGTTTGCATATATATGATTTTTTAGAAGATACTGTACTTTATCATTTTTCACAAAATTGTTCATGTAATGGCCTCTTCTCTCAAACTATATTTAGGGAAAAAAATCCTAATTGAGCAAAA
CDS Sequence
- >LOC_Os01g45070.1
ATGGCCGCGCGCCTTCACCTCCGCCTCGGCCCCCGCCTCCGCGGGTTCGCGTCCTCCTTCGCCCCCCTCCTCGCCGCGCACCCCAGAGCGCTGCCCCTCTCCCGCATGGGCTCGGTGGCGCCTCTCGCGGCGGCACGCGCCCGCCGCGGCTTCGGTTCCGCCGTCGCCACCGCGCCGCCGGCCGAGGACGAGGACTTCGCCACAGCTGCTGACCTCCAGTTCGAGCCGCCGCTCAAGGTCGTGAAGTACCCCGACCCAATCCTACGGGCTCGCAACAAGCGCATCAACACCTTCGATGACAACCTCCGCAGCCTCACTGATGAGATGTTCGACGTTATGTACAAGACTGATGGAATTGGTCTCTCTGCACCACAAGTTGGGGTGAATGTACAGCTTATGGTATTTAATCCAGCTGGTGTGAAGGGAGAAGGAGAGGAGATTGTCCTTGTCAACCCGGTTGTATACAAAATGTCGAAGAGATTGTTAGTGTATGAGGAAGGCTGCTTATCATTCCCTGGGATATATGCCAATGTGGTGAGACCAGACAATGTCAAAATTGATGCTCAGGATGTTACAGGGGCAAAGATTAAAGTTAAATTGTCAGGTCTGTCTGCAAGAGTTTTCCAACATGAATTTGATCATTTACAGGGGATTCTTTTCTTTGACAGGATGTCTCTTGATGTTCTTGAGAGCGTGCGTGAGGGACTGAAGGACCTAGAGAAGAAATATGAGGAAAGTACAGGGCTAGTAAGCCCTGAAAGTATTGAGAACTACAAAGGAAGAAAGGATCTCATTAGTTTCTCAAGATGA - >LOC_Os01g45070.2
ATGGCCGCGCGCCTTCACCTCCGCCTCGGCCCCCGCCTCCGCGGGTTCGCGTCCTCCTTCGCCCCCCTCCTCGCCGCGCACCCCAGAGCGCTGCCCCTCTCCCGCATGGGCTCGGTGGCGCCTCTCGCGGCGGCACGCGCCCGCCGCGGCTTCGGTTCCGCCGTCGCCACCGCGCCGCCGGCCGAGGACGAGGACTTCGCCACAGCTGCTGACCTCCAGTTCGAGCCGCCGCTCAAGGTCGTGAAGTACCCCGACCCAATCCTACGGGCTCGCAACAAGCGCATCAACACCTTCGATGACAACCTCCGCAGCCTCACTGATGAGATGTTCGACGTTATGTACAAGACTGATGGAATTGGTCTCTCTGCACCACAAGTTGGGGTGAATGTACAGCTTATGGTATTTAATCCAGCTGGTGTGAAGGGAGAAGGAGAGGAGATTGTCCTTGTCAACCCGGTTGTATACAAAATGTCGAAGAGATTGTTAGTGTATGAGGAAGGCTGCTTATCATTCCCTGGGATATATGCCAATGTGGTGAGACCAGACAATGTCAAAATTGATGCTCAGGATGTTACAGGGGCAAAGATTAAAGTTAAATTGTCAGGTCTGTCTGCAAGAGTTTTCCAACATGAATTTGATCATTTACAGGGGATTCTTTTCTTTGACAGGATGTCTCTTGATGTTCTTGAGAGCGTGCGTGAGGGACTGAAGGACCTAGAGAAGAAATATGAGGAAAGTACAGGGCTAGTAAGCCCTGAAAGTATTGAGAACTACAAAGGAAGAAAGGATCTCATTAGTTTCTCAAGATGA
Protein Sequence
- >LOC_Os01g45070.1
MAARLHLRLGPRLRGFASSFAPLLAAHPRALPLSRMGSVAPLAAARARRGFGSAVATAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYEESTGLVSPESIENYKGRKDLISFSR* - >LOC_Os01g45070.2
MAARLHLRLGPRLRGFASSFAPLLAAHPRALPLSRMGSVAPLAAARARRGFGSAVATAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYEESTGLVSPESIENYKGRKDLISFSR*