Information report for OsSEH1
Gene Details
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Functional Descriptions
- In this study, we revealed that nucleoporin-coding gene OsSEH1 was a positive regulator of cold stress in rice.
- Physiological assays showed that the activity of antioxidant enzymes showed a significant difference between OsSEH1 knock-out lines and wild type under cold stress.
- Metabolome analysis revealed that the contents of large-scale flavonoids serving as ROS scavengers were lower in OsSEH1 mutants compared with wild type under cold stress.
- Transcriptome analysis indicated that the DEGs between OsSEH1 knock-out lines and wild type plants were enriched in defense response, regulation of hormone levels and oxidation-reduction process.
- In addition, Exogenous ABA application assays indicated that OsSEH1 lines had hypersensitive phenotypes compared with wild type plants, suggesting that OsSEH1 may mediate cold tolerance by regulating ABA levels.
- Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.
- Integration of transcriptomic and metabolic profiling revealed that OsSEH1 plays a role in the oxidation-reduction process by coordinately regulating genes expression and metabolite accumulation involved in phenylpropanoid and flavonoid biosynthetic pathway.
Functional Keywords
- stress , defense-response , defense , tolerance , cold-tolerance , cold-stress , ABA , cold , flavonoid
Literature and News
Gene Resources
- UniProt: Q0JL67
- EMBL: AP002843, AP003328, AP008207
- EnsemblPlants: Os01t0620100-01
- Gramene: Os01t0620100-01
- KEGG: dosa:Os01g0620100, osa:4326622
- Orthologous matrix: NAPTRRW
- InterPro: IPR001680, IPR015943, IPR036322
- PANTHER: PTHR11024, PTHR11024:SF3
- SUPFAM: SSF50978
- PROSITE: PS50082, PS50294
- Gene3D: 2.130.10.10
- OrthoDB: Q0JL67
- SWISS-MODEL: Q0JL67
Homologs
- Brassica napus: GSBRNA2T00043488001
Sequences
cDNA Sequence
- >LOC_Os01g43250.1
AGTGTCCGTACACCCAACCCACCTGGGCCGCCGCGTCTCGTTCTCTCCTCCAACAAACCCACCTCCGAGCAGGCTGCGTGCTCTCGCCGCCGCCGCCACCGTAGGCGAGGGCATCTCATCTCAGGGAGGAATGGCGGAGCGGCAGGTGGCGGAGCTGGGGGCCGGCGCGGCGTGCGTAGGCTGGAACCACTGCGGCCGCCGCCTCGCCGCCGGCGCCGTCGACGGCTTCGTCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAGATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATGGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCATGTACTTCTGCATCAATTGCATGGAGTCCAAGAAGAGGTGAAAGTCAGCAGGCTAGTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCTAACATCGGCAGACCATATGAGATCATAGCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGTGCTTGACTGCAATGTGTCTCACTAGGGTTGCATATCTTTTTTTTCTGGTTGGAACTGGGGCCTTGGGGGATTCCCAGCTCCCAAGTTGTGCAAACAAGCATTTAAGTGGATTGCTTATCAATGTTAAAGAATTCTGCAAGATCTCTTTCAATTATACTGTCGTGCACGTGGTTGGTTTT
CDS Sequence
- >LOC_Os01g43250.1
ATGGCGGAGCGGCAGGTGGCGGAGCTGGGGGCCGGCGCGGCGTGCGTAGGCTGGAACCACTGCGGCCGCCGCCTCGCCGCCGGCGCCGTCGACGGCTTCGTCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAGATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATGGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCATGTACTTCTGCATCAATTGCATGGAGTCCAAGAAGAGGTGAAAGTCAGCAGGCTAGTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCTAACATCGGCAGACCATATGAGATCATAGCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGTGCTTGACTGCAATGTGTCTCACTAG
Protein Sequence
- >LOC_Os01g43250.1
MAERQVAELGAGAACVGWNHCGRRLAAGAVDGFVSVYDSQSQPSPSSKWQAHKHAILNIVWLPPDYGDAIACVCADGTLSLWEEVSEDDQLPTWRKCKVFESGNSHILHVQFGLQLSSLKMVTAYSDGQVKVYELLDSLELDKWQLQAEFQNITDPVSRSGKPACTSASIAWSPRRGESQQASFAIGFNSDSPNFNSCKIWEFEEAHQRWLPLVELGSPQDKGDIVHAVAWAPNIGRPYEIIAVATCKGIAIWHIGLSAESDGSLSTENVAVLSGHDGEVLQLEWDMGGMTLASTGGDGMVKLWQANLNGVWHEQAVLDCNVSH*