Information report for TN1
Gene Details
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Functional Descriptions
- Taken together, these results indicate that TN1 is a tillering regulatory factor whose alleles present apparent preferential utilization across geographical regions.
- Natural variation in TN1 affects its interaction with TIF1 (TN1 interaction factor 1) to affect DWARF14 expression and negatively regulate tiller number in rice.
Functional Keywords
Literature and News
Gene Resources
- UniProt: B9EY07
- EMBL: CM000138
- AlphaFoldDB: B9EY07
- InterPro: IPR001025, IPR012677, IPR035979
- PANTHER: PTHR47073, PTHR47073:SF2
- SUPFAM: SSF54928
- PROSITE: PS51038
- Gene3D: 2.30.30.490, 3.30.70.330
- SWISS-MODEL: B9EY07
Sequences
cDNA Sequence
- >LOC_Os01g42460.1
GCGTCCGTACTGAGACCCAACCACAAAAATCTCACCTCCTCCTCCTCCTCCCTCTCCCACCGCGGCCTCCTCCTGCTACCTGGGAGCCACGCGCCCCCGGCCTCCACCTCGCCGCCCTCCTCGCCGGCGGCCGCCACGCGCTTATGGTGAGTGCACAGTGAGCTACAAGTTACCATTATCAGAATGGATGGTAGTAATGAGAATATCCAATTCTCATGGGGGAAGAAGAGAGCAAAAGGTGGTATTAAGATGGATACACAGTTTTATGACTCCTTCACATTTGACAATGTGAAGTACTCACTGTATGACAATGTATATCTTTTTAAGAGTGGTGAGTCTGAACCTTACATTGGAAAGATAATAAAGATATGGCAGCAAAATCAGGCTAAGAAAGTAAAGATTCTTTGGTTTTTTCTCCCGGATGAGATTCGAAAACATTTAAGTGGCCCTGTAATGGAAAAGGAGATATTTCTTGCTTGTGGTGAAGGCGTTGGCCTTGCTGATATCAACCCACTGGAAGCTATTGGTGGGAAATGCACTGTGCTTTGCATTTCAAAGGATGAGAGGAATCGTCAACCTTCCCCCAGGGAACTAGCAATGGCTGATTATATCTTCTACAGGTTTTTTGATGTTAACAGTTGCACACTTTCTGAACAATTACCTGAGAAAATTGCAGGGGTGGAAGGAAATCTTTTGCTTAATTCAAAAGTTGAGCAAGTGACATCCTGTTCAGACCAGGAAGTGCATGGTGTTGATCAGAAGATGCTTAATGTCCCAGTTCCCCTTCCCCAGTCAACGGTTATGGAGGATGAAAGTCCAGTTGCTGCAGTTTCCCTTCCCCCGTCAGTATTCAAGGAGGAAAATGTGGCTTCAGCCATTCCCTTTCCCCAGCCAGTGGTCAAGGAGGAAAGTGCGGCTGCTGCCATTCCCCCTCCCCATGTAGCACTGAAAGAGGAGAGTGTGTCCAAATCTACAGAGAACATTACCAAACCTGCACAGAAAGTTCTCCCTGGGGAGAGGCCACCAAAGAGGGTCAAATTTTCTGAAAATGTTACAGTGCAAAATGTGCCATTAGATGTTCCTGAAAGACCAAGTCGCACTGGACCTTTGGAACTAGCAGGTAGACAAGCTGACAGAAGCAAATGGTTCAAGATTCCATGGGATACCAGACTACGAAATGCTGATGAGCAGGGGACACTTGTGTACATTCAAAATCTTGACATACAGTTTGCAGCTGCTGACATAGAGGAGCTTATACGTGATGCTTTACAACTAAATTGTATCGCTAAGCCTATTAACCACCCAACTTATGATGATCCAAACAATGGAAAAGCATATGCTATATTCAAAACAAAAAGTGCCGCAGACTCTGCTATTTCAAAAATTAATTCAGGCTTGGTGGTCGGTGGAAGACCCCTTTATTGCAGCAAAGGATTGCTTAAGGTTCCAAAACCTTCAGAAACTCTTCTCGGGCACTTAACAATCAACAATATTAGAATGGGTATAAGACAACGAGAAGAACAGAAGAAGGCAGTTTCAACCTCGCATTGTTCTCAACCCAATACAATGGAGTATGATTTGGCCTTGGATTGGATGCTTGTCCGAGCAAAGCAAGAAACGAAATTTAGGACACTTCACAAGAAGCATAAAGATGAGAGGAAGACCTTTGCGAGTAAGATGGGAAAGTAAGTGGCTTCCATGGATTTGGTTAAGCGATGGGAACTGTCCTGTTCCGTGCTTATCTTGGAGTCCTCTACTGAGTACTGACTATCATTCCTCGGAGCTTTATGCACTTTTTGCCTGAAGCAACACTTATCTGCGAGTTTTTCTGCTGCGCAAGAATGAAATGCAACGACCATTTGAGGGGGACAACTAACTGCACCACACTGACTCTGCTCATGTTCCGTAGAGCATTATTTTTAGAAAGGAAAGAATTGTGCCATAGCTTAAGAAACCAAAGTAACATTGGTAGAAGTAGCCCTTGCAGCAAGTTAGGAAAGCCAGAGGCTGTTTTAGGTTACCCCGCACATCAATTTGATCTCACATGGACACATCAGTTAGATCTGTTGCTCCATGTTAGATAGCAAATCAACGCGTGCCGTCATGAAATGTGTATGTATATATTTTTAAATTCATGACCTGGCTATTAGTTCATTCATGTGACTGCTTATGTGTCTTGAGTTACAAGTTACAACTTGACTCCGTTCC
CDS Sequence
- >LOC_Os01g42460.1
ATGGATGGTAGTAATGAGAATATCCAATTCTCATGGGGGAAGAAGAGAGCAAAAGGTGGTATTAAGATGGATACACAGTTTTATGACTCCTTCACATTTGACAATGTGAAGTACTCACTGTATGACAATGTATATCTTTTTAAGAGTGGTGAGTCTGAACCTTACATTGGAAAGATAATAAAGATATGGCAGCAAAATCAGGCTAAGAAAGTAAAGATTCTTTGGTTTTTTCTCCCGGATGAGATTCGAAAACATTTAAGTGGCCCTGTAATGGAAAAGGAGATATTTCTTGCTTGTGGTGAAGGCGTTGGCCTTGCTGATATCAACCCACTGGAAGCTATTGGTGGGAAATGCACTGTGCTTTGCATTTCAAAGGATGAGAGGAATCGTCAACCTTCCCCCAGGGAACTAGCAATGGCTGATTATATCTTCTACAGGTTTTTTGATGTTAACAGTTGCACACTTTCTGAACAATTACCTGAGAAAATTGCAGGGGTGGAAGGAAATCTTTTGCTTAATTCAAAAGTTGAGCAAGTGACATCCTGTTCAGACCAGGAAGTGCATGGTGTTGATCAGAAGATGCTTAATGTCCCAGTTCCCCTTCCCCAGTCAACGGTTATGGAGGATGAAAGTCCAGTTGCTGCAGTTTCCCTTCCCCCGTCAGTATTCAAGGAGGAAAATGTGGCTTCAGCCATTCCCTTTCCCCAGCCAGTGGTCAAGGAGGAAAGTGCGGCTGCTGCCATTCCCCCTCCCCATGTAGCACTGAAAGAGGAGAGTGTGTCCAAATCTACAGAGAACATTACCAAACCTGCACAGAAAGTTCTCCCTGGGGAGAGGCCACCAAAGAGGGTCAAATTTTCTGAAAATGTTACAGTGCAAAATGTGCCATTAGATGTTCCTGAAAGACCAAGTCGCACTGGACCTTTGGAACTAGCAGGTAGACAAGCTGACAGAAGCAAATGGTTCAAGATTCCATGGGATACCAGACTACGAAATGCTGATGAGCAGGGGACACTTGTGTACATTCAAAATCTTGACATACAGTTTGCAGCTGCTGACATAGAGGAGCTTATACGTGATGCTTTACAACTAAATTGTATCGCTAAGCCTATTAACCACCCAACTTATGATGATCCAAACAATGGAAAAGCATATGCTATATTCAAAACAAAAAGTGCCGCAGACTCTGCTATTTCAAAAATTAATTCAGGCTTGGTGGTCGGTGGAAGACCCCTTTATTGCAGCAAAGGATTGCTTAAGGTTCCAAAACCTTCAGAAACTCTTCTCGGGCACTTAACAATCAACAATATTAGAATGGGTATAAGACAACGAGAAGAACAGAAGAAGGCAGTTTCAACCTCGCATTGTTCTCAACCCAATACAATGGAGTATGATTTGGCCTTGGATTGGATGCTTGTCCGAGCAAAGCAAGAAACGAAATTTAGGACACTTCACAAGAAGCATAAAGATGAGAGGAAGACCTTTGCGAGTAAGATGGGAAAGTAA
Protein Sequence
- >LOC_Os01g42460.1
MDGSNENIQFSWGKKRAKGGIKMDTQFYDSFTFDNVKYSLYDNVYLFKSGESEPYIGKIIKIWQQNQAKKVKILWFFLPDEIRKHLSGPVMEKEIFLACGEGVGLADINPLEAIGGKCTVLCISKDERNRQPSPRELAMADYIFYRFFDVNSCTLSEQLPEKIAGVEGNLLLNSKVEQVTSCSDQEVHGVDQKMLNVPVPLPQSTVMEDESPVAAVSLPPSVFKEENVASAIPFPQPVVKEESAAAAIPPPHVALKEESVSKSTENITKPAQKVLPGERPPKRVKFSENVTVQNVPLDVPERPSRTGPLELAGRQADRSKWFKIPWDTRLRNADEQGTLVYIQNLDIQFAAADIEELIRDALQLNCIAKPINHPTYDDPNNGKAYAIFKTKSAADSAISKINSGLVVGGRPLYCSKGLLKVPKPSETLLGHLTINNIRMGIRQREEQKKAVSTSHCSQPNTMEYDLALDWMLVRAKQETKFRTLHKKHKDERKTFASKMGK*