Gene Details:
- MSU gene ID: LOC_Os01g42460
- RAPdb gene ID: Os01g0610300
- Gene Symbol: TN1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Taken together, these results indicate that TN1 is a tillering regulatory factor whose alleles present apparent preferential utilization across geographical regions.
- Natural variation in TN1 affects its interaction with TIF1 (TN1 interaction factor 1) to affect DWARF14 expression and negatively regulate tiller number in rice.
Function-related keywords:
Literature:
- Natural variation in Tiller Number 1 affects its interaction with TIF1 to regulate tillering in rice . DOI: 10.1111/pbi.14017 ; PMID: 36705337
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os01g42460.1
GCGTCCGTACTGAGACCCAACCACAAAAATCTCACCTCCTCCTCCTCCTCCCTCTCCCACCGCGGCCTCCTCCTGCTACCTGGGAGCCACGCGCCCCCGGCCTCCACCTCGCCGCCCTCCTCGCCGGCGGCCGCCACGCGCTTATGGTGAGTGCACAGTGAGCTACAAGTTACCATTATCAGAATGGATGGTAGTAATGAGAATATCCAATTCTCATGGGGGAAGAAGAGAGCAAAAGGTGGTATTAAGATGGATACACAGTTTTATGACTCCTTCACATTTGACAATGTGAAGTACTCACTGTATGACAATGTATATCTTTTTAAGAGTGGTGAGTCTGAACCTTACATTGGAAAGATAATAAAGATATGGCAGCAAAATCAGGCTAAGAAAGTAAAGATTCTTTGGTTTTTTCTCCCGGATGAGATTCGAAAACATTTAAGTGGCCCTGTAATGGAAAAGGAGATATTTCTTGCTTGTGGTGAAGGCGTTGGCCTTGCTGATATCAACCCACTGGAAGCTATTGGTGGGAAATGCACTGTGCTTTGCATTTCAAAGGATGAGAGGAATCGTCAACCTTCCCCCAGGGAACTAGCAATGGCTGATTATATCTTCTACAGGTTTTTTGATGTTAACAGTTGCACACTTTCTGAACAATTACCTGAGAAAATTGCAGGGGTGGAAGGAAATCTTTTGCTTAATTCAAAAGTTGAGCAAGTGACATCCTGTTCAGACCAGGAAGTGCATGGTGTTGATCAGAAGATGCTTAATGTCCCAGTTCCCCTTCCCCAGTCAACGGTTATGGAGGATGAAAGTCCAGTTGCTGCAGTTTCCCTTCCCCCGTCAGTATTCAAGGAGGAAAATGTGGCTTCAGCCATTCCCTTTCCCCAGCCAGTGGTCAAGGAGGAAAGTGCGGCTGCTGCCATTCCCCCTCCCCATGTAGCACTGAAAGAGGAGAGTGTGTCCAAATCTACAGAGAACATTACCAAACCTGCACAGAAAGTTCTCCCTGGGGAGAGGCCACCAAAGAGGGTCAAATTTTCTGAAAATGTTACAGTGCAAAATGTGCCATTAGATGTTCCTGAAAGACCAAGTCGCACTGGACCTTTGGAACTAGCAGGTAGACAAGCTGACAGAAGCAAATGGTTCAAGATTCCATGGGATACCAGACTACGAAATGCTGATGAGCAGGGGACACTTGTGTACATTCAAAATCTTGACATACAGTTTGCAGCTGCTGACATAGAGGAGCTTATACGTGATGCTTTACAACTAAATTGTATCGCTAAGCCTATTAACCACCCAACTTATGATGATCCAAACAATGGAAAAGCATATGCTATATTCAAAACAAAAAGTGCCGCAGACTCTGCTATTTCAAAAATTAATTCAGGCTTGGTGGTCGGTGGAAGACCCCTTTATTGCAGCAAAGGATTGCTTAAGGTTCCAAAACCTTCAGAAACTCTTCTCGGGCACTTAACAATCAACAATATTAGAATGGGTATAAGACAACGAGAAGAACAGAAGAAGGCAGTTTCAACCTCGCATTGTTCTCAACCCAATACAATGGAGTATGATTTGGCCTTGGATTGGATGCTTGTCCGAGCAAAGCAAGAAACGAAATTTAGGACACTTCACAAGAAGCATAAAGATGAGAGGAAGACCTTTGCGAGTAAGATGGGAAAGTAAGTGGCTTCCATGGATTTGGTTAAGCGATGGGAACTGTCCTGTTCCGTGCTTATCTTGGAGTCCTCTACTGAGTACTGACTATCATTCCTCGGAGCTTTATGCACTTTTTGCCTGAAGCAACACTTATCTGCGAGTTTTTCTGCTGCGCAAGAATGAAATGCAACGACCATTTGAGGGGGACAACTAACTGCACCACACTGACTCTGCTCATGTTCCGTAGAGCATTATTTTTAGAAAGGAAAGAATTGTGCCATAGCTTAAGAAACCAAAGTAACATTGGTAGAAGTAGCCCTTGCAGCAAGTTAGGAAAGCCAGAGGCTGTTTTAGGTTACCCCGCACATCAATTTGATCTCACATGGACACATCAGTTAGATCTGTTGCTCCATGTTAGATAGCAAATCAACGCGTGCCGTCATGAAATGTGTATGTATATATTTTTAAATTCATGACCTGGCTATTAGTTCATTCATGTGACTGCTTATGTGTCTTGAGTTACAAGTTACAACTTGACTCCGTTCC
CDS Sequence
- >LOC_Os01g42460.1
ATGGATGGTAGTAATGAGAATATCCAATTCTCATGGGGGAAGAAGAGAGCAAAAGGTGGTATTAAGATGGATACACAGTTTTATGACTCCTTCACATTTGACAATGTGAAGTACTCACTGTATGACAATGTATATCTTTTTAAGAGTGGTGAGTCTGAACCTTACATTGGAAAGATAATAAAGATATGGCAGCAAAATCAGGCTAAGAAAGTAAAGATTCTTTGGTTTTTTCTCCCGGATGAGATTCGAAAACATTTAAGTGGCCCTGTAATGGAAAAGGAGATATTTCTTGCTTGTGGTGAAGGCGTTGGCCTTGCTGATATCAACCCACTGGAAGCTATTGGTGGGAAATGCACTGTGCTTTGCATTTCAAAGGATGAGAGGAATCGTCAACCTTCCCCCAGGGAACTAGCAATGGCTGATTATATCTTCTACAGGTTTTTTGATGTTAACAGTTGCACACTTTCTGAACAATTACCTGAGAAAATTGCAGGGGTGGAAGGAAATCTTTTGCTTAATTCAAAAGTTGAGCAAGTGACATCCTGTTCAGACCAGGAAGTGCATGGTGTTGATCAGAAGATGCTTAATGTCCCAGTTCCCCTTCCCCAGTCAACGGTTATGGAGGATGAAAGTCCAGTTGCTGCAGTTTCCCTTCCCCCGTCAGTATTCAAGGAGGAAAATGTGGCTTCAGCCATTCCCTTTCCCCAGCCAGTGGTCAAGGAGGAAAGTGCGGCTGCTGCCATTCCCCCTCCCCATGTAGCACTGAAAGAGGAGAGTGTGTCCAAATCTACAGAGAACATTACCAAACCTGCACAGAAAGTTCTCCCTGGGGAGAGGCCACCAAAGAGGGTCAAATTTTCTGAAAATGTTACAGTGCAAAATGTGCCATTAGATGTTCCTGAAAGACCAAGTCGCACTGGACCTTTGGAACTAGCAGGTAGACAAGCTGACAGAAGCAAATGGTTCAAGATTCCATGGGATACCAGACTACGAAATGCTGATGAGCAGGGGACACTTGTGTACATTCAAAATCTTGACATACAGTTTGCAGCTGCTGACATAGAGGAGCTTATACGTGATGCTTTACAACTAAATTGTATCGCTAAGCCTATTAACCACCCAACTTATGATGATCCAAACAATGGAAAAGCATATGCTATATTCAAAACAAAAAGTGCCGCAGACTCTGCTATTTCAAAAATTAATTCAGGCTTGGTGGTCGGTGGAAGACCCCTTTATTGCAGCAAAGGATTGCTTAAGGTTCCAAAACCTTCAGAAACTCTTCTCGGGCACTTAACAATCAACAATATTAGAATGGGTATAAGACAACGAGAAGAACAGAAGAAGGCAGTTTCAACCTCGCATTGTTCTCAACCCAATACAATGGAGTATGATTTGGCCTTGGATTGGATGCTTGTCCGAGCAAAGCAAGAAACGAAATTTAGGACACTTCACAAGAAGCATAAAGATGAGAGGAAGACCTTTGCGAGTAAGATGGGAAAGTAA
Protein Sequence
- >LOC_Os01g42460.1
MDGSNENIQFSWGKKRAKGGIKMDTQFYDSFTFDNVKYSLYDNVYLFKSGESEPYIGKIIKIWQQNQAKKVKILWFFLPDEIRKHLSGPVMEKEIFLACGEGVGLADINPLEAIGGKCTVLCISKDERNRQPSPRELAMADYIFYRFFDVNSCTLSEQLPEKIAGVEGNLLLNSKVEQVTSCSDQEVHGVDQKMLNVPVPLPQSTVMEDESPVAAVSLPPSVFKEENVASAIPFPQPVVKEESAAAAIPPPHVALKEESVSKSTENITKPAQKVLPGERPPKRVKFSENVTVQNVPLDVPERPSRTGPLELAGRQADRSKWFKIPWDTRLRNADEQGTLVYIQNLDIQFAAADIEELIRDALQLNCIAKPINHPTYDDPNNGKAYAIFKTKSAADSAISKINSGLVVGGRPLYCSKGLLKVPKPSETLLGHLTINNIRMGIRQREEQKKAVSTSHCSQPNTMEYDLALDWMLVRAKQETKFRTLHKKHKDERKTFASKMGK*