Gene Details:
- MSU gene ID: LOC_Os01g39680
- RAPdb gene ID: Os01g0578700
- Gene Symbol: SaM
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Male semi-sterility in this heterozygous complex locus is caused by abortion of pollen carrying SaM(-).
- Here we show that a locus for indica-japonica hybrid male sterility, Sa, comprises two adjacent genes, SaM and SaF, encoding a small ubiquitin-like modifier E3 ligase-like protein and an F-box protein, respectively.
- This allele-specific gamete elimination results from a selective interaction of SaF(+) with SaM(-), a truncated protein, but not with SaM(+) because of the presence of an inhibitory domain, although SaM(+) is required for this male sterility.
- Our results firmly proved that SaF and SaM are required for the hybrid male sterility, but are not essential for pollen development.
- Here we showed that silencing of SaF or SaM by RNA interference restored male fertility in indica-japonica hybrids with heterozygous Sa.
Function-related keywords:
- pollen , sterility , development , fertility , pollen-development , male-sterility , SA
Literature:
- Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes . DOI: 10.1073/pnas.0810108105 ; PMID: 19033192
- Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice . DOI: 10.1111/jipb.12564 ; PMID: 28636095
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os01g39680.3
GTCCCTGCCCATTTCGCCCTCCCCGGCCGTCCCCGTCGATATCACCCGAGCCCTAACTCCCGACTCCTTCCTCGCCGCGCCGCCATGGCGCCCCCTCGGCCCGCTTCACCACAGAGCTTGCCGCCCGTGGCTGCCACCCGATCCCGCGGTCGCCCGTACGAGGGCTGGACTCTCAAGGAGCTGATTGGGGAGGTGCGCCGTCTACGACGAGCCGCCTCCTCGGCGCCGCCCCGGCCGGCGGGCGTCCTCGACCTCGACCAGGGGGACGCGCGCGCCTCGGACACGGTCGCCCCCTCGCCGCCCTCACCGTGTGAATCCCAGGAGCAACCCCACCATCTTGGCAAGAGGCTGGAGGATGTGCTTATTTCCCTACGGGATGTCGCCTTCCAGTTCATCAAGATCGGTCGACAAGACGAGGTGCGTAAAATCGTGAATGTAGCACACGATATTGTGGTTAACTTCTGCAATGCCATTAGAGCGCCCGAAGCGTTCAAATTAGTGGCTGCTGCTGAGAATGTGAAACCACATCTGTTGAAGATAGATCATGATGACAACCTTCTGTTTCTACAATTTAAGGCTGCACTGGAGCAGGTTCACAATGTTAACCATGAGATTGCTATATCTCTTGACAAGTACACCAATTGCCCACTGTCCGGGACGGAGATTGCAGAGTTAACTCAGCCATTGAGAAGGTTGTCCTGGTGCTGTGTCAAACGACCTGGTATTTGAGGATGCAGAGCTTAGGCACGACATAAAGTACTGCCACTGACAGAGAGAATGTGCAAGAGGTTTGGTTTGGTTACAGGTCGAACAGGCTTCAATTCTGCAACGCGAGGCAAACGTCTGCTGTGTTTTGTTTCTCTGGGCACCTGTCATTTACCTTTGGCTTAAACAAGGCATTCAGCGGTTGATCGCTGTGCCATGCCCTTGTACATAGAAACAAATATTATTCTGTACATGGAATGGAAGAGTTCCAACACCTGCAAATGAATGAGCACTGTCAGCGTTGGGCAAGTGGTTCCGATTTCGGCTGGTGTGGATTTTAATCCGGGATTGAAGATGCGTGCATCGGCAGATATCATATGCCGGTCATGCTGTTGTTGCCGTAACAATTTTTTGTTTCTAATTGTTGCTACTTGCTACTCCCTCGGTTCCATAAGGTTCCATAATAAGTTCATTTTTTTA - >LOC_Os01g39680.2
GTCCCTGCCCATTTCGCCCTCCCCGGCCGTCCCCGTCGATATCACCCGAGCCCTAACTCCCGACTCCTTCCTCGCCGCGCCGCCATGGCGCCCCCTCGGCCCGCTTCACCACAGAGCTTGCCGCCCGTGGCTGCCACCCGATCCCGCGGTCGCCCGTACGAGGGCTGGACTCTCAAGGAGCTGATTGGGGAGGTGCGCCGTCTACGACGAGCCGCCTCCTCGGCGCCGCCCCGGCCGGCGGGCGTCCTCGACCTCGACCAGGGGGACGCGCGCGCCTCGGACACGGTCGCCCCCTCGCCGCCCTCACCGTGTGAATCCCAGGAGCAACCCCACCATCTTGGCAAGAGGCTGGAGGATGTGCTTATTTCCCTACGGGATGTCGCCTTCCAGTTCATCAAGATCGGTCGACAAGACGAGGTGCGTAAAATCGTGAATGTAGCACACGATATTGTGGTTAACTTCTGCAATGCCATTAGAGCGCCCGAAGCGTTCAAATTAGTGGCTGCTGCTGAGAATGTGAAACCACATCTGTTGAAGATAGATCATGATGACAACCTTCTGTTTCTACAATTTAAGGCTGCACTGGAGCAGGTTCACAATGTTAACCATGAGATTGCTATATCTCTTGACAAGTACACCAATTGCCCACTGTCCGGGACGGAGATTGCAGAGTTAACTCAGCCATTGAGAAGGTTGTCCTGGTGCTGTGTCAAACGACCTGGTATTTGAGGATGCAGAGCTTAGGCACGACATAAAGTACTGCCACTGACAGAGAGAATGTGCAAGAGGTTTGGTTTGGTTACAGGTCGAACAGGCTTCAATTCTGCAACGCGAGGCAAACGTCTGCTGTGTTTTGTTTCTCTGGGCACCTGTCATTTACCTTTGGCTTAAACAAGGCATTCAGCGGTTGATCGCTGTGCCATGCCCTTGTACATAGAAACAAATATTATTCTGTACATGGAATGGAAGAGTTCCAACACCTGCAAATGAATGAGCACTGTCAGCGTTGGGCAAGTGGTTCCGATTTCGGCTGGTGTGGATTTTAATCCGGGATTGAAGATGCGTGCATCGGCAGATATCATATGCCGGTCATGCTGTTGTTGCCGTAACAATTTTTTGTTTCTAATTGTTGCTACTTGCTACTCCCTCGGTTCCATAAGGTTCCATAATAAGTTCATTTTTTTA - >LOC_Os01g39680.1
GTCCCTGCCCATTTCGCCCTCCCCGGCCGTCCCCGTCGATATCACCCGAGCCCTAACTCCCGACTCCTTCCTCGCCGCGCCGCCATGGCGCCCCCTCGGCCCGCTTCACCACAGAGCTTGCCGCCCGTGGCTGCCACCCGATCCCGCGGTCGCCCGTACGAGGGCTGGACTCTCAAGGAGCTGATTGGGGAGGTGCGCCGTCTACGACGAGCCGCCTCCTCGGCGCCGCCCCGGCCGGCGGGCGTCCTCGACCTCGACCAGGGGGACGCGCGCGCCTCGGACACGGTCGCCCCCTCGCCGCCCTCACCGTGTGAATCCCAGGAGCAACCCCACCATCTTGGCAAGAGGCTGGAGGATGTGCTTATTTCCCTACGGGATGTCGCCTTCCAGTTCATCAAGATCGGTCGACAAGACGAGGTGCGTAAAATCGTGAATGTAGCACACGATATTGTGGTTAACTTCTGCAATGCCATTAGAGCGCCCGAAGCGTTCAAATTAGTGGCTGCTGCTGAGAATGTGAAACCACATCTGTTGAAGATAGATCATGATGACAACCTTCTGTTTCTACAATTTAAGGCTGCACTGGAGCAGGTTCACAATGTTAACCATGAGATTGCTATATCTCTTGACAAGTACACCAATTGCCCACTGTCCGGGACGGAGATTGCAGAGTTAACTCAGCCATTGAGAAGGTTGTCCTGGTGCTGTGTCAAACGACCTGGTATTTGAGGATGCAGAGCTTAGGCACGACATAAAGTACTGCCACTGACAGAGAGAATGTGCAAGAGGTTTGGTTTGGTTACAGGTCGAACAGGCTTCAATTCTGCAACGCGAGGCAAACGTCTGCTGTGTTTTGTTTCTCTGGGCACCTGTCATTTACCTTTGGCTTAAACAAGGCATTCAGCGGTTGATCGCTGTGCCATGCCCTTGTACATAGAAACAAATATTATTCTGTACATGGAATGGAAGAGTTCCAACACCTGCAAATGAATGAGCACTGTCAGCGTTGGGCAAGTGGTTCCGATTTCGGCTGGTGTGGATTTTAATCCGGGATTGAAGATGCGTGCATCGGCAGATATCATATGCCGGTCATGCTGTTGTTGCCGTAACAATTTTTTGTTTCTAATTGTTGCTACTTGCTACTCCCTCGGTTCCATAAGGTTCCATAATAAGTTCATTTTTTTA
CDS Sequence
- >LOC_Os01g39680.3
ATGGCGCCCCCTCGGCCCGCTTCACCACAGAGCTTGCCGCCCGTGGCTGCCACCCGATCCCGCGGTCGCCCGTACGAGGGCTGGACTCTCAAGGAGCTGATTGGGGAGGTGCGCCGTCTACGACGAGCCGCCTCCTCGGCGCCGCCCCGGCCGGCGGGCGTCCTCGACCTCGACCAGGGGGACGCGCGCGCCTCGGACACGGTCGCCCCCTCGCCGCCCTCACCGTGTGAATCCCAGGAGCAACCCCACCATCTTGGCAAGAGGCTGGAGGATGTGCTTATTTCCCTACGGGATGTCGCCTTCCAGTTCATCAAGATCGGTCGACAAGACGAGGTGCGTAAAATCGTGAATGTAGCACACGATATTGTGGTTAACTTCTGCAATGCCATTAGAGCGCCCGAAGCGTTCAAATTAGTGGCTGCTGCTGAGAATGTGAAACCACATCTGTTGAAGATAGATCATGATGACAACCTTCTGTTTCTACAATTTAAGGCTGCACTGGAGCAGGTTCACAATGTTAACCATGAGATTGCTATATCTCTTGACAAGTACACCAATTGCCCACTGTCCGGGACGGAGATTGCAGAGTTAACTCAGCCATTGAGAAGGTTGTCCTGGTGCTGTGTCAAACGACCTGGTATTTGA - >LOC_Os01g39680.2
ATGGCGCCCCCTCGGCCCGCTTCACCACAGAGCTTGCCGCCCGTGGCTGCCACCCGATCCCGCGGTCGCCCGTACGAGGGCTGGACTCTCAAGGAGCTGATTGGGGAGGTGCGCCGTCTACGACGAGCCGCCTCCTCGGCGCCGCCCCGGCCGGCGGGCGTCCTCGACCTCGACCAGGGGGACGCGCGCGCCTCGGACACGGTCGCCCCCTCGCCGCCCTCACCGTGTGAATCCCAGGAGCAACCCCACCATCTTGGCAAGAGGCTGGAGGATGTGCTTATTTCCCTACGGGATGTCGCCTTCCAGTTCATCAAGATCGGTCGACAAGACGAGGTGCGTAAAATCGTGAATGTAGCACACGATATTGTGGTTAACTTCTGCAATGCCATTAGAGCGCCCGAAGCGTTCAAATTAGTGGCTGCTGCTGAGAATGTGAAACCACATCTGTTGAAGATAGATCATGATGACAACCTTCTGTTTCTACAATTTAAGGCTGCACTGGAGCAGGTTCACAATGTTAACCATGAGATTGCTATATCTCTTGACAAGTACACCAATTGCCCACTGTCCGGGACGGAGATTGCAGAGTTAACTCAGCCATTGAGAAGGTTGTCCTGGTGCTGTGTCAAACGACCTGGTATTTGA - >LOC_Os01g39680.1
ATGGCGCCCCCTCGGCCCGCTTCACCACAGAGCTTGCCGCCCGTGGCTGCCACCCGATCCCGCGGTCGCCCGTACGAGGGCTGGACTCTCAAGGAGCTGATTGGGGAGGTGCGCCGTCTACGACGAGCCGCCTCCTCGGCGCCGCCCCGGCCGGCGGGCGTCCTCGACCTCGACCAGGGGGACGCGCGCGCCTCGGACACGGTCGCCCCCTCGCCGCCCTCACCGTGTGAATCCCAGGAGCAACCCCACCATCTTGGCAAGAGGCTGGAGGATGTGCTTATTTCCCTACGGGATGTCGCCTTCCAGTTCATCAAGATCGGTCGACAAGACGAGGTGCGTAAAATCGTGAATGTAGCACACGATATTGTGGTTAACTTCTGCAATGCCATTAGAGCGCCCGAAGCGTTCAAATTAGTGGCTGCTGCTGAGAATGTGAAACCACATCTGTTGAAGATAGATCATGATGACAACCTTCTGTTTCTACAATTTAAGGCTGCACTGGAGCAGGTTCACAATGTTAACCATGAGATTGCTATATCTCTTGACAAGTACACCAATTGCCCACTGTCCGGGACGGAGATTGCAGAGTTAACTCAGCCATTGAGAAGGTTGTCCTGGTGCTGTGTCAAACGACCTGGTATTTGA
Protein Sequence
- >LOC_Os01g39680.3
MAPPRPASPQSLPPVAATRSRGRPYEGWTLKELIGEVRRLRRAASSAPPRPAGVLDLDQGDARASDTVAPSPPSPCESQEQPHHLGKRLEDVLISLRDVAFQFIKIGRQDEVRKIVNVAHDIVVNFCNAIRAPEAFKLVAAAENVKPHLLKIDHDDNLLFLQFKAALEQVHNVNHEIAISLDKYTNCPLSGTEIAELTQPLRRLSWCCVKRPGI* - >LOC_Os01g39680.2
MAPPRPASPQSLPPVAATRSRGRPYEGWTLKELIGEVRRLRRAASSAPPRPAGVLDLDQGDARASDTVAPSPPSPCESQEQPHHLGKRLEDVLISLRDVAFQFIKIGRQDEVRKIVNVAHDIVVNFCNAIRAPEAFKLVAAAENVKPHLLKIDHDDNLLFLQFKAALEQVHNVNHEIAISLDKYTNCPLSGTEIAELTQPLRRLSWCCVKRPGI* - >LOC_Os01g39680.1
MAPPRPASPQSLPPVAATRSRGRPYEGWTLKELIGEVRRLRRAASSAPPRPAGVLDLDQGDARASDTVAPSPPSPCESQEQPHHLGKRLEDVLISLRDVAFQFIKIGRQDEVRKIVNVAHDIVVNFCNAIRAPEAFKLVAAAENVKPHLLKIDHDDNLLFLQFKAALEQVHNVNHEIAISLDKYTNCPLSGTEIAELTQPLRRLSWCCVKRPGI*