Information report for OsRDR6;shl-2
Gene Details
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Functional Descriptions
- We isolated a rice OsRDR6-1 mutant, which was temperature sensitive and showed spikelet defects.
- In three independent transgenic lines (OsRDR6AS line A, B and C) in which OsRDR6 transcription levels were reduced by 70-80% through antisense silencing, the infection and disease symptoms of RSV were shown to be significantly enhanced.
- The hypersusceptibilities of the OsRDR6AS plants were attributed not to enhanced insect infestation but to enhanced virus infection.
- We propose that ABA modulates PTGS through the transcriptional control of the OsRDR6 gene.
- OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus.
Literature and News
- RNA-dependent RNA polymerase 6 of rice (Oryza sativa) plays role in host defense against negative-strand RNA virus, Rice stripe virus . DOI: 10.1016/j.virusres.2011.11.016 ; PMID: 22142475
- The SHOOTLESS2 and SHOOTLESS1 genes are involved in both initiation and maintenance of the shoot apical meristem through regulating the number of indeterminate cells . DOI: 10.1093/genetics/164.1.335 ; PMID: 12750344
- Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development . DOI: 10.1111/j.1365-313X.2012.05001.x ; PMID: 22443269
- Initiation of shoot apical meristem in rice: characterization of four SHOOTLESS genes . DOI: 10.1242/dev.126.16.3629 ; PMID: 10409508
- p2 of rice stripe virus (RSV) interacts with OsSGS3 and is a silencing suppressor . DOI: 10.1111/j.1364-3703.2011.00716.x ; PMID: 21726383
- Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells . DOI: 10.1093/nar/gkm1133 ; PMID: 18160413
- Distinct regulation of adaxial-abaxial polarity in anther patterning in rice . DOI: 10.1105/tpc.110.075291 ; PMID: 20511295
- The small interfering RNA production pathway is required for shoot meristem initiation in rice . DOI: 10.1073/pnas.0704339104 ; PMID: 17804793
- OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus . DOI: 10.1038/srep11324 ; PMID: 26165755
- Oryza sativa RNA-Dependent RNA Polymerase 6 Contributes to Double-Strand Break Formation in Meiosis . DOI: 10.1105/tpc.20.00213 ; PMID: 32732308
- DEGENERATED LEMMA (DEL) regulates lemma development and affects rice grain yield . DOI: 10.1007/s12298-023-01297-6 ; PMID: 37033767
Gene Resources
- UniProt: Q8LHH9
- EMBL: AB353923, AP004357, AP008207
- AlphaFoldDB: Q8LHH9
- EnsemblPlants: Os01t0527600-01
- Gramene: Os01t0527600-01
- KEGG: dosa:Os01g0527600
Sequences
cDNA Sequence
- >LOC_Os01g34350.1
TCTTCGTTGGTGTCCCCTCGCTTAAACCCCTCCGAAATTTATTTACTCATCAAAAATTTAATAACCGAATCCGATTGATCTTCCCCTCTCTCTCTCTCTCTCACTCCTCCCAGCTCCCACCCAACCACCCAAGCCATGCGATCGCCGCGCGGCGGGGCGGCCGCGCAGCCGTCGGGGCGGCGCGGCGACACGACGGCGGCGGCGGCGGGCGATCTGGTGACGACGCAGGTCAGCCTTGGCGGCTTCGACGCCGGCGTCGCCGCGGGGGACCTCGCCGACTTCCTGGAGCACGAGGTCGGCCTGGTCTGGCGCTGCCGCGTCAAGACCTCCTGGACGCCGCCGGACTCCTACCCGGACTTCGCCCTCCCCACCGCCCCCGCCTCCGCCTCGGCCGCGGCCGCGCCGCCGCGGTACGACCGGGTGCCCCCGCACGCGTTTGTCCACTTCGCGCGCCCGGAGGGGGCGCGCCGCGCCGCGGACCTCGCGGGGGAGACCAGGCTCATCCTGAGGGGGAAGCCCCTGCGCGTCGCGTCCGCGCCGGACAGCTCGCTCCGCGTGTCCCGCCGCAGCAGCATCGCGCCGTTCCGGTTCCCCGACGTGCGCCTCGAGGTCGGGGCGCTCCCGTCGCCCGGCGCGTTCCTCGCCGCCTGGCGCGGGCCGGACGCCGGGCTCGACCTCTCCGTCGACCCCTTCGACGGGTGCTGCCGCCTCGTGTTCACCCGCGACACCGCCTTCACGTTCCCGGGCTTCCGCGAGGTCGCCGCCATACGCTGCGACGTCAAGCTGGAGTTCCCCGTGCGCGACGTCCTGGAGGTCCGCCTGTACCGCCTCGACTGCTCGCTGCTCCTCCGCCTCGCCGCCGCGCCGCTGGTGCACTACCGCACCGCCGACGACGACTTCCACGAGCCGGTCCCCTTCGACCTGCTCGACGACGACGACCCGTGGATACGGACCACGGACATCACCCCGAGCGGCGCCATCGGGCGGTGCGGGGTGTACAGGATCTCCTTCTCGGCGCGATTCTGGCCCAAGATGGACCGCGCGCTGGACTACATGAGGGAGAGGAGGGTGGCGATCGTCGATTGCGGCGGCGGATGGGGGCCGCGGCGGGGGCTCACAGTGCGCGACGAGCTGGAGTTCGGGGAGCCAATGCAGGACGTCTTCTTCTGCCTGCAGCACGCCGAGGGGCTCAAGTTCCCGCTCCTCTTCATGGTGAACGCGTTGGTGCACAAGGGAATCATCAACCAGCACCAGCTCACGCCTGAATTCTTCAGCCTGCTGGGGAGAAGCGAGGAGAACGTCAATGTGGCTGCATTGAGGGATTTCTGGGGGGACAAGTTCCCAGTGTTTGATGCGTGCGGGAGGCTGAAGAAGGCACTGAATCGGGTGGCCAGGAACCCCAAACTTCTCTGCAGCAAGGTCGGGGATGACCACGCGGAGGTGCGGAGGCTGGTGATCACGCCCACCAGGGCTTATTGTCTGCCTCCAGAAGTGGAGCGCTCAAACCGTGTTCTTCGGCATTACCATGAGGTGGCTGACAGGTTTTTGAGGGTCACTTTTATGGACGAGGGTATGCAGGTGCTGAACAACAATGTGCTCAACTCCTTCACTGCACCAATTGTCAAAGACTTGATGTCGAATTTTTTCCAGCAGAAGACAACGGTGTACAAGCGTGTCAGGATGTTGTTGACGGAGGGTTTCCACATGTGTGGAAGGAAGTACTCATTTCTCGCATTCTCATCGAACCAGTTAAGGGACAAGTCAGCTTGGTTCTTTGCCGAGGACAGAAAGACAACGGTGGAAGCAATTAGGAAGTGGATGGGACGGTTCACAAGTAAGAATGTTGCGAAGCATGCTGCTCGAATGGGGCAGTGCTTCTCATCCACATATGCAACTGTGACAATGCGGCCGGATGAGGTTGATGAGAGTTTTGATGATGTTGTGCATAATGAGTACATTTTCTCCGATGGAATTGGCAAAATTACCCCAGATCTTGCATTGGAAGTTGCCGAGAGGCTGCAGCTGACAGATAACCCGCCATCTGCTTATCAGATCAGGTTTGCTGGCTTCAAGGGTGTCATAGCTGTCTGGCAAGGACATGGTGATGGGACACGGCTTTTCCTGAGGCCAAGCATGAGGAAGTTTGAGTCTAACCATTTGGTGTTAGAGGTGGTCTCCTGGACAAAGTTCCAGCCAGGATTCTTAAATCGACAGATTATAATATTGCTATCCTCACTGAATGTCCCAGATTCTATCTTTTGGCAAATGCAAGAGACCATGCTTTCTAACCTCAACAATATTCTATCAGACAGAGATGTTGCTTTTGAGGTTTTAACAACTTCATGTGCTGATGATGGAAACACTGCAGCATTGATGCTCAGTGCTGGCTTTGAACCTAGAACTGAACCACACTTGAAAGCAATGCTCTTGGCTATAAGGTCTGCACAATTGCAGGATCTTTTGGAAAAAGCAAGGATATTTGTGCCAAAGGGAAGGTGGTTGATGGGCTGTCTTGATGAGCTTGGGGTTCTTGAGCAAGGGCAGTGCTTTATTCGGGCAACAGTTCCATCATTGAATAGTTATTTTGTTAAGCATGGGTCAAGATTTTCATCAACAGATAAAAACACAGAGGTCATTTTGGGTACTGTGGTAATAGCAAAGAATCCCTGTCTTCATCCAGGGGATGTCCGCATCCTTGAAGCAGTTGATGTGCCCGAACTGCATCATCTGGTTGATTGTTTGGTGTTCCCCCAGAAAGGTGAGAGGCCACATGCTAACGAGGCATCTGGGAGCGATCTTGATGGGGATCTCTACTTTGTGACATGGGATGAGAAACTTATACCTCCAGGCAAGAAGAGCTGGAACCCTATGGACTACTCCCCACCTGAAGCAAAACAACTTCCGCGCCAAGTATCTCAACATGATATCATTGATTTCTTCTTAAAGAACATGATAAGTGAGAATCTTGGTAGGATCTGTAATGCTCATGTTGTTCATGCTGATCTTAGCGAGTATGGTGCAATGGATGAGAAGTGTATTCACTTAGCTGAGCTAGCAGCAACTGCCGTGGACTTCCCCAAGACTGGCAAACTTGCGATAATGCCACCACACCTTAAACCAAAAGTCTACCCTGACTTCATGGGAAAGGAAGATGGACAATCTTATAAATCAGAAAAGATTCTTGGAAGGCTTTATCGTTCAATCCAAGAGGCCTCCAATGGTGATGTGGTGTCACAAGAGGTTTGCACTCCAAATGATCTGCCTTATGACATAGATCTGGAAGTTCCTGGTGCATCAGATTTCCTCGCGAGTGCTTGGCAATGCAAGTGTTCATACGACGCGCAGCTGAGTGCGCTGCTCAGTCAGTACAGGGTCCGCACTGAAGCTGAACTTGTGACAGGGCACATAACGTTCCTTGTTAAGAACAGCAGCAAGAAGCAAGGCGACATAAAGGACAGGCTGAAGACTGCTTACTCTGCACTACGCAAGGAGTTCAAAAGTACCTTTGAGAGCATAGCATCGGATCAATGCGAGATTGGTGATGACGAGAAGAATCTGCTGTACGAGATGAAGGCCTCTGCCTGGTACCAGGTGACCTATCACCCCAAATGGGTGGAGAAGTCGAGGGGCATTCTGGGCCCAGATGGTGAGGAAATACCGGCAAGCCTTAGCTTTGCATGGATCCCGGTGGATTACTTGGCGCGGATAAAGCTAAGGTGCCATGGTAAAGTGAGAGTTGAAGGCCAAAAGCCTGTTGAAAGGCTTGCAGCATACATCTCCGAGAGGATATGATGAAACAATGCAAAGGTCGCAGTAAGACCACTCTGCCATTCGTAATGCCGGTTCAAAGGGCATGCGTACAAAATATCTGAGTTTTTTTTTCTTTTCATTTTTGTTCACTTCACTGAACTTGATCTCCCGAATGTTTCAGTGTGCTTTTGTTCCTTCTTACATGCCCCTCAAGCCTGAAAAACTGTACGTTTCAGTTGAGGGCTGTCTATATTATGAAATGCACAAATATACGCTGCCTGCAGCTTTTGGCAATA
CDS Sequence
- >LOC_Os01g34350.1
ATGCGATCGCCGCGCGGCGGGGCGGCCGCGCAGCCGTCGGGGCGGCGCGGCGACACGACGGCGGCGGCGGCGGGCGATCTGGTGACGACGCAGGTCAGCCTTGGCGGCTTCGACGCCGGCGTCGCCGCGGGGGACCTCGCCGACTTCCTGGAGCACGAGGTCGGCCTGGTCTGGCGCTGCCGCGTCAAGACCTCCTGGACGCCGCCGGACTCCTACCCGGACTTCGCCCTCCCCACCGCCCCCGCCTCCGCCTCGGCCGCGGCCGCGCCGCCGCGGTACGACCGGGTGCCCCCGCACGCGTTTGTCCACTTCGCGCGCCCGGAGGGGGCGCGCCGCGCCGCGGACCTCGCGGGGGAGACCAGGCTCATCCTGAGGGGGAAGCCCCTGCGCGTCGCGTCCGCGCCGGACAGCTCGCTCCGCGTGTCCCGCCGCAGCAGCATCGCGCCGTTCCGGTTCCCCGACGTGCGCCTCGAGGTCGGGGCGCTCCCGTCGCCCGGCGCGTTCCTCGCCGCCTGGCGCGGGCCGGACGCCGGGCTCGACCTCTCCGTCGACCCCTTCGACGGGTGCTGCCGCCTCGTGTTCACCCGCGACACCGCCTTCACGTTCCCGGGCTTCCGCGAGGTCGCCGCCATACGCTGCGACGTCAAGCTGGAGTTCCCCGTGCGCGACGTCCTGGAGGTCCGCCTGTACCGCCTCGACTGCTCGCTGCTCCTCCGCCTCGCCGCCGCGCCGCTGGTGCACTACCGCACCGCCGACGACGACTTCCACGAGCCGGTCCCCTTCGACCTGCTCGACGACGACGACCCGTGGATACGGACCACGGACATCACCCCGAGCGGCGCCATCGGGCGGTGCGGGGTGTACAGGATCTCCTTCTCGGCGCGATTCTGGCCCAAGATGGACCGCGCGCTGGACTACATGAGGGAGAGGAGGGTGGCGATCGTCGATTGCGGCGGCGGATGGGGGCCGCGGCGGGGGCTCACAGTGCGCGACGAGCTGGAGTTCGGGGAGCCAATGCAGGACGTCTTCTTCTGCCTGCAGCACGCCGAGGGGCTCAAGTTCCCGCTCCTCTTCATGGTGAACGCGTTGGTGCACAAGGGAATCATCAACCAGCACCAGCTCACGCCTGAATTCTTCAGCCTGCTGGGGAGAAGCGAGGAGAACGTCAATGTGGCTGCATTGAGGGATTTCTGGGGGGACAAGTTCCCAGTGTTTGATGCGTGCGGGAGGCTGAAGAAGGCACTGAATCGGGTGGCCAGGAACCCCAAACTTCTCTGCAGCAAGGTCGGGGATGACCACGCGGAGGTGCGGAGGCTGGTGATCACGCCCACCAGGGCTTATTGTCTGCCTCCAGAAGTGGAGCGCTCAAACCGTGTTCTTCGGCATTACCATGAGGTGGCTGACAGGTTTTTGAGGGTCACTTTTATGGACGAGGGTATGCAGGTGCTGAACAACAATGTGCTCAACTCCTTCACTGCACCAATTGTCAAAGACTTGATGTCGAATTTTTTCCAGCAGAAGACAACGGTGTACAAGCGTGTCAGGATGTTGTTGACGGAGGGTTTCCACATGTGTGGAAGGAAGTACTCATTTCTCGCATTCTCATCGAACCAGTTAAGGGACAAGTCAGCTTGGTTCTTTGCCGAGGACAGAAAGACAACGGTGGAAGCAATTAGGAAGTGGATGGGACGGTTCACAAGTAAGAATGTTGCGAAGCATGCTGCTCGAATGGGGCAGTGCTTCTCATCCACATATGCAACTGTGACAATGCGGCCGGATGAGGTTGATGAGAGTTTTGATGATGTTGTGCATAATGAGTACATTTTCTCCGATGGAATTGGCAAAATTACCCCAGATCTTGCATTGGAAGTTGCCGAGAGGCTGCAGCTGACAGATAACCCGCCATCTGCTTATCAGATCAGGTTTGCTGGCTTCAAGGGTGTCATAGCTGTCTGGCAAGGACATGGTGATGGGACACGGCTTTTCCTGAGGCCAAGCATGAGGAAGTTTGAGTCTAACCATTTGGTGTTAGAGGTGGTCTCCTGGACAAAGTTCCAGCCAGGATTCTTAAATCGACAGATTATAATATTGCTATCCTCACTGAATGTCCCAGATTCTATCTTTTGGCAAATGCAAGAGACCATGCTTTCTAACCTCAACAATATTCTATCAGACAGAGATGTTGCTTTTGAGGTTTTAACAACTTCATGTGCTGATGATGGAAACACTGCAGCATTGATGCTCAGTGCTGGCTTTGAACCTAGAACTGAACCACACTTGAAAGCAATGCTCTTGGCTATAAGGTCTGCACAATTGCAGGATCTTTTGGAAAAAGCAAGGATATTTGTGCCAAAGGGAAGGTGGTTGATGGGCTGTCTTGATGAGCTTGGGGTTCTTGAGCAAGGGCAGTGCTTTATTCGGGCAACAGTTCCATCATTGAATAGTTATTTTGTTAAGCATGGGTCAAGATTTTCATCAACAGATAAAAACACAGAGGTCATTTTGGGTACTGTGGTAATAGCAAAGAATCCCTGTCTTCATCCAGGGGATGTCCGCATCCTTGAAGCAGTTGATGTGCCCGAACTGCATCATCTGGTTGATTGTTTGGTGTTCCCCCAGAAAGGTGAGAGGCCACATGCTAACGAGGCATCTGGGAGCGATCTTGATGGGGATCTCTACTTTGTGACATGGGATGAGAAACTTATACCTCCAGGCAAGAAGAGCTGGAACCCTATGGACTACTCCCCACCTGAAGCAAAACAACTTCCGCGCCAAGTATCTCAACATGATATCATTGATTTCTTCTTAAAGAACATGATAAGTGAGAATCTTGGTAGGATCTGTAATGCTCATGTTGTTCATGCTGATCTTAGCGAGTATGGTGCAATGGATGAGAAGTGTATTCACTTAGCTGAGCTAGCAGCAACTGCCGTGGACTTCCCCAAGACTGGCAAACTTGCGATAATGCCACCACACCTTAAACCAAAAGTCTACCCTGACTTCATGGGAAAGGAAGATGGACAATCTTATAAATCAGAAAAGATTCTTGGAAGGCTTTATCGTTCAATCCAAGAGGCCTCCAATGGTGATGTGGTGTCACAAGAGGTTTGCACTCCAAATGATCTGCCTTATGACATAGATCTGGAAGTTCCTGGTGCATCAGATTTCCTCGCGAGTGCTTGGCAATGCAAGTGTTCATACGACGCGCAGCTGAGTGCGCTGCTCAGTCAGTACAGGGTCCGCACTGAAGCTGAACTTGTGACAGGGCACATAACGTTCCTTGTTAAGAACAGCAGCAAGAAGCAAGGCGACATAAAGGACAGGCTGAAGACTGCTTACTCTGCACTACGCAAGGAGTTCAAAAGTACCTTTGAGAGCATAGCATCGGATCAATGCGAGATTGGTGATGACGAGAAGAATCTGCTGTACGAGATGAAGGCCTCTGCCTGGTACCAGGTGACCTATCACCCCAAATGGGTGGAGAAGTCGAGGGGCATTCTGGGCCCAGATGGTGAGGAAATACCGGCAAGCCTTAGCTTTGCATGGATCCCGGTGGATTACTTGGCGCGGATAAAGCTAAGGTGCCATGGTAAAGTGAGAGTTGAAGGCCAAAAGCCTGTTGAAAGGCTTGCAGCATACATCTCCGAGAGGATATGA
Protein Sequence
- >LOC_Os01g34350.1
MRSPRGGAAAQPSGRRGDTTAAAAGDLVTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALPTAPASASAAAAPPRYDRVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVSRRSSIAPFRFPDVRLEVGALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGFREVAAIRCDVKLEFPVRDVLEVRLYRLDCSLLLRLAAAPLVHYRTADDDFHEPVPFDLLDDDDPWIRTTDITPSGAIGRCGVYRISFSARFWPKMDRALDYMRERRVAIVDCGGGWGPRRGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARNPKLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQKPVERLAAYISERI*