Information report for OsGER4
Gene Details
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Functional Descriptions
- The ProGER4::GUS reporter line showed that OsGER4 is a hormone-responsive gene involved in various stress responses, mainly confined to epidermal and vascular tissues during CR primordia development and to vascular bundles of mature crown and lateral roots.
- The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.
- Phenotyping experiments with OsGER4 knockout mutants confirmed that this gene is required for CR development under exogenous JA treatment.
- Notable changes in OsGER4 expression patterns caused by the polar auxin transport inhibitor NPA support its connection to auxin signaling.
- A subsequent genome-wide association study and gene expression analyses pinpointed a strong association between the Germin-like protein OsGER4 and the increase in CR number under exogenous JA treatment.
Functional Keywords
- vascular-bundle , root , development , auxin , stress , ja , JA , crown-root-development , root-development , auxin-transport , jasmonic , jasmonic-acid , crown , crown-root , lateral-root , stress-response
Literature and News
Gene Resources
- UniProt: Q7F731
- EMBL: AF032974, AK061164, AP003018
- AlphaFoldDB: Q7F731
- EnsemblPlants: Os01t0284500-01
- Gramene: Os01t0284500-01
- KEGG: dosa:Os01g0284500
- Orthologous matrix: GIFFQPC
- InterPro: IPR001929, IPR006045, IPR011051
- PANTHER: PTHR31238
- SUPFAM: SSF51182
- PROSITE: PS00725
- Gene3D: 2.60.120.10
- OrthoDB: Q7F731
- SWISS-MODEL: Q7F731
- Conserved Domain Database: cd02241
- eggNOG: ENOG502QQ4A
Homologs
- Saccharum spontaneum: Sspon.04G0017530-2T, Sspon.04G0017530-3P, Sspon.04G0017530-1A, Sspon.04G0017540-1A, Sspon.04G0017530-3D
Sequences
cDNA Sequence
- >LOC_Os01g18170.1
TGTGTAGCAGTTCGCCTAGATCCGCATTAAACTAGTCTATCTCCAGCAATTTATGGTTCACGGCTTTGAACTAAATAAGCCGCCTCCCGCGTGTCCACCCCTCTTGCCTCTGCTCCCTTTGTCCACTTGCCGCCTCTCCCCGTACTCCTACCAACTCTTCTCGTCGTCGGCGGCGGCTTCGTCCGGCTCACCGGCCGCTGCATCTCCCTTTGTGTCTTAGTTAGTTTAATCCCATTTACAAATCTTACGTGGTGAACTGATCAATTATTAGTTGAGCTGAGCTGAGCTTATAAGTAGCAGCTGCTCTGATCTGCTCAGCTCGCTTCATCACCTTCCACTCAGTCAATCGCAGCGAGAAGCCAAGAAGCACTCAACCACGCGCTGTTCGTCATGGCGAGGGTACAGCTCTGGGTGGCCGCCGCGTGCGCCGTCGTGCTCGCGCTCGCCGCGCCCTCGCTCGCCGGCGACCCCGACATGCTCCAGGACGTCTGCGTCGCCGACTTGGCGTCCCCGGTGAAGCTGAACGGGTTCCCGTGCAAGGCGAACGTGACGGCGGACGACTTCTTCTTCGCGGGGCTGAAGAACCCCGGCAACACCAACAACCCGGCGGGGTCGAACGTGACGGCGGCGAACGTGCAGTCGTTCCCGGGGGTGAACACGCTGGGCGTGTCTATGGCGAGGATCGACTACGCGCCGGGGGGACAGAACCCGCCGCACACGCACCCGCGCGCCACCGAGATCATCTTCGTCCTCGAGGGCGTCCTCGAGGTGGGCTTCATCACCACTGCCAACAAGCTCTTCACCAAGACTGTCACCGCCGGCGAGGTCTTCGTCTTCCCGCGCGGCCTCGTCCACTTCCAGCAGAACCGCGGCCACGGCCCCGCCGCCGTCATCGCCGCCTTCAACAGCCAGCTCCAGGGCACCCAGGCCATCGCCGCCACGCTCTTCGCCGCCGCGCCGCCCGTGCCGTCCGACGTCCTCGCCAAGGCCTTCCGCGTCGACGTCCCGCAGGTGGACGCCATCAAGGCCAAGTTCAAGTGATCGTAGCCGGCCGCCGTCGATCTCCCATCATTTTCTGCATTTTCTTTCATCAACAAAACCATCTGATCTACTCATTTGATTTGGTTACGGAATAATTTTAGTGGATACTGTCTGTAGCGTGCAGTTGATTTCTTCCGTTTGTAAATCTGTTTGCATTTGTTAATTTGCCTTGGAAATAAGACTTGTTCCGTTTTGTGTGGACTAATCGCTGTATTTTTAGCGCTACAAATTGCTTCTTTCGTTAACTACGTGTAATCGACTGA
CDS Sequence
- >LOC_Os01g18170.1
ATGGCGAGGGTACAGCTCTGGGTGGCCGCCGCGTGCGCCGTCGTGCTCGCGCTCGCCGCGCCCTCGCTCGCCGGCGACCCCGACATGCTCCAGGACGTCTGCGTCGCCGACTTGGCGTCCCCGGTGAAGCTGAACGGGTTCCCGTGCAAGGCGAACGTGACGGCGGACGACTTCTTCTTCGCGGGGCTGAAGAACCCCGGCAACACCAACAACCCGGCGGGGTCGAACGTGACGGCGGCGAACGTGCAGTCGTTCCCGGGGGTGAACACGCTGGGCGTGTCTATGGCGAGGATCGACTACGCGCCGGGGGGACAGAACCCGCCGCACACGCACCCGCGCGCCACCGAGATCATCTTCGTCCTCGAGGGCGTCCTCGAGGTGGGCTTCATCACCACTGCCAACAAGCTCTTCACCAAGACTGTCACCGCCGGCGAGGTCTTCGTCTTCCCGCGCGGCCTCGTCCACTTCCAGCAGAACCGCGGCCACGGCCCCGCCGCCGTCATCGCCGCCTTCAACAGCCAGCTCCAGGGCACCCAGGCCATCGCCGCCACGCTCTTCGCCGCCGCGCCGCCCGTGCCGTCCGACGTCCTCGCCAAGGCCTTCCGCGTCGACGTCCCGCAGGTGGACGCCATCAAGGCCAAGTTCAAGTGA
Protein Sequence
- >LOC_Os01g18170.1
MARVQLWVAAACAVVLALAAPSLAGDPDMLQDVCVADLASPVKLNGFPCKANVTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITTANKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPPVPSDVLAKAFRVDVPQVDAIKAKFK*