Information report for PNZIP;OsCRD1
Gene Details
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Functional Descriptions
- 1 region were associated with the presence of one or more flowering time genes (GI, SOC1, FT-L8, EMF1, and PNZIP).
- Under short-day lengths, lines with introgressions carrying combinations of linked flowering time genes (GI/SOC1, SOC1/FT-L8, GI/SOC1/FT-L8 and EMF1/PNZIP) from the late parent, O.
- rufipogon, flowered earlier than the recurrent parent, Jefferson, while recombinant lines carrying smaller introgressions marked by the presence of GI, SOC1, EMF1 or PNZIP alone no longer flowered early.
- Under long-day length, lines carrying SOC1/FT-L8, SOC1 or PNZIP flowered early, while those carrying GI or EMF1 delayed flowering.
- Map-based cloning and over-expression analysis suggested that YL-1 encodes a subunit of MPEC.
- Results of qRT-PCR showed that Chl biosynthesis upstream genes were highly expressed in the YL-1 mutant, while downstream genes were compromised, indicating that YL-1 plays a pivotal role in the Chl biosynthesis.
Functional Keywords
Literature and News
- Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice . DOI: 10.1007/s00122-009-1219-7 ; PMID: 19949767
- Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL . DOI: 10.1534/genetics.105.050500 ; PMID: 16452146
- Yellow-Leaf 1 encodes a magnesium-protoporphyrin IX monomethyl ester cyclase, involved in chlorophyll biosynthesis in rice (Oryza sativa L.) . DOI: 10.1371/journal.pone.0177989 ; PMID: 28558018
Gene Resources
- UniProt: Q0JNL9
- EMBL: AP000815, AP001072, AP008207
- EnsemblPlants: Os01t0279100-01
- Gramene: Os01t0279100-01
- KEGG: dosa:Os01g0279100, osa:4326901
- Orthologous matrix: FHPIFKW
Sequences
cDNA Sequence
- >LOC_Os01g17170.1
TCTCATCCATCCGTCCCACCATGTATATACCCGCCCACCACCTCCCCTCCCCCAAAACTCTTCTTCCCCCTCCCGCCCCGGCCAGGTGTTTGACGAAATGGCCTCCTCCGCCATGGAGCTCTCCCTCCTCAACCCGGCGGCAATGCGCGGCCTCTCCGCCGCCAAGCCCCGCGTCGTGTCTTCCAGGCGCATCGTGCGGTTCCGCGTGGCGTCGTCAGCCGCGGCGCCGCCCGCGGCGAAGCCCGGGACGCCCAAGAAGCGCGGGAAGACGGAGATCCAGGAGACGCTGCTGACGCCGCGGTTCTACACCACGGACTTCGACGAGATGGAGCGGCTGTTCAACGCCGAGATCAACAAGCAGCTCAACCAGGAGGAGTTCGACGCGCTGCTGCAGGAGTTCAAGACGGACTATAACCAGACCCACTTCGTCCGCAACCCGGAGTTCAAGGCCGCCGCCGACAAGATGGAGGGGCCTCTCAGGCAGATCTTCGTCGAGTTCCTCGAGCGCTCCTGCACCGCGGAGTTCTCCGGGTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGAAAACAAACCCAGTGGTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTCTTGACCAAGGCTAGGAAGTACACCTTCTTCAAGCCCAAGTTCATCTTCTACGCGACCTACCTGTCGGAGAAGATTGGGTACTGGAGGTACATCACCATCTTCAGGCACCTCAAGGCGAACCCGGAGTACCAGGTGTACCCCATCTTCAAGTACTTTGAGAACTGGTGCCAGGATGAGAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAAGGGATTGGTCTGGACACCAAAGAATTCGACATGCATGTGATAATTGAGACCAACCGCACAACAGCAAGGATTTTCCCCGCTGTTCTTGACGTCGAGAACCCTGAATTCAAGAGGAAGTTAGACAGGATGGTGGAGATCAACAAAAAGATCATTGCCATAGGCGAGTCTGACGATATCCCCCTGGTGAAGAACCTGAAGAGGATTCCTCACGTTGCCGCTCTGGTGTCTGAGATCATTGCTGCGTACCTCATGCCCCCAATCGAGTCTGGCTCTGTTGATTTCGCTGAATTCGAGCCCCAGCTTGTCTACTGATTCTGTAGGAAGACCATCTCCAGCTTTTTTTTCCTTCAAAAAGGAATGCTGATATTTTCTGCCTGAGGGGCTTCGAACGGTGAGATGATGGGTGGTTAGCAGAATCTGCACCTCGTGTGTTCCTTTGTAAAGTATTGAGACTTCAACAATGTACCATTTGGCAAAGGTTTTGTTATGATCTCCATTTAAGTGGCAGTGAACTGCATCACAGTGGGGGTTACAGTTTTCCAACAGAAGGGTAATTATATGATGTTTTGGGGTTGTTGATACTTCATACTTAAGTTCCTTAGCATCCTAAGTATCTCTTAGCTGTGCTCTGCATTATGGCATAATGTTTGGTCTTGGTGAAGGTGAATAGTGACGCCAACTACTGAAAACCTGGACAATGCAAGTGTTGGAAGATGTTGTAAATGTTGGATCTAACATGACACGCACCCACCTATTGTTGCCATAGTTCGTGAGCCGCAATCTCTATTTTTGTCGGAAAGGAAAAGAGTATTAATCTTTACTATCACGACCGGAGAAGAATGCCGTTACAGTGCGATATGGTGCCGGGAACATTCCTGACGTGATAGCACGTTCAAGTGATAGACAAACTATTTTTTCAAGCAATTGCAGGGAGTTTCGATGTAATATTAGTAGCTTTCATGAGTTTTTGCTATGAAGCCTCAACAAGTTGAAAAGATA - >LOC_Os01g17170.2
TCTCATCCATCCGTCCCACCATGTATATACCCGCCCACCACCTCCCCTCCCCCAAAACTCTTCTTCCCCCTCCCGCCCCGGCCAGGTGTTTGACGAAATGGCCTCCTCCGCCATGGAGCTCTCCCTCCTCAACCCGGCGGCAATGCGCGGCCTCTCCGCCGCCAAGCCCCGCGTCGTGTCTTCCAGGCGCATCGTGCGGTTCCGCGTGGCGTCGTCAGCCGCGGCGCCGCCCGCGGCGAAGCCCGGGACGCCCAAGAAGCGCGGGAAGACGGAGATCCAGGAGACGCTGCTGACGCCGCGGTTCTACACCACGGACTTCGACGAGATGGAGCGGCTGTTCAACGCCGAGATCAACAAGCAGCTCAACCAGGAGGAGTTCGACGCGCTGCTGCAGGAGTTCAAGACGGACTATAACCAGACCCACTTCGTCCGCAACCCGGAGTTCAAGGCCGCCGCCGACAAGATGGAGGGGCCTCTCAGGCAGATCTTCGTCGAGTTCCTCGAGCGCTCCTGCACCGCGGAGTTCTCCGGGTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGAAAACAAACCCAGTGGTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTCTTGACCAAGGCTAGGAAGTACACCTTCTTCAAGCCCAAGTTCATCTTCTACGCGACCTACCTGTCGGAGAAGATTGGGTACTGGAGGTACATCACCATCTTCAGGCACCTCAAGGCGAACCCGGAGTACCAGGTGTACCCCATCTTCAAGTACTTTGAGAACTGGTGCCAGGATGAGAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAAGGGATTGGTCTGGACACCAAAGAATTCGACATGCATGTGATAATTGAGACCAACCGCACAACAGCAAGGATTTTCCCCGCTGTTCTTGACGTCGAGAACCCTGAATTCAAGAGGAAGTTAGACAGGATGGTGGAGATCAACAAAAAGATCATTGCCATAGGCGAGTCTGACGATATCCCCCTGGTGAAGAACCTGAAGAGGATTCCTCACGTTGCCGCTCTGGTGTCTGAGATCATTGCTGCGTACCTCATGCCCCCAATCGAGTCTGGCTCTGTTGATTTCGCTGAATTCGAGCCCCAGCTTGTCTACTGATTCTGTAGGAAGACCATCTCCAGCTTTTTTTTCCTTCAAAAAGGAATGCTGATATTTTCTGCCTGAGGGGCTTCGAACGGTGAGATGATGGGTGGTTAGCAGAATCTGCACCTCGTGTGTTCCTTTGTAAAGTATTGAGACTTCAACAATGTACCATTTGGCAAAGGTTTTGTTATGATCTCCATTTAAGTGGCAGTGAACTGCATCACAGTGGGGGTTACAGTTTTCCAACAGAAGGGTAATTATATGATGTTTTGGGGTTGTTGATACTTCATACTTAAGTTCCTTAGCATCCTAAGTATCTCTTAGCTGTGCTCTGCATTATGGCATAATGTTTGGTCTTGGTGAAGGTGAATAGTGACGCCAACTACTGAAAACCTGGACAATGCAAGTGTTGGAAGATGTTGTAAATGTTGGATCTAACATGACACGCACCCACCTATTGTTGCCATAGTTCGTGAGCCGCAATCTCTATTTTTGTCGGAAAGGAAAAGAGTATTAATCTTTACTATCACGACCGGAGAAGAATGCCGTTACAGTGCGATATGGTGCCGGGAACATTCCTGACGTGATAGCACGTTCAAGTGATAGACAAACTATTTTTTCAAGCAATTGCAGGGAGTTTCGATGTAATATTAGTAGCTTTCATGAGTTTTTGCTATGAAGCCTCAACAAGTTGAAAAGATA
CDS Sequence
- >LOC_Os01g17170.1
ATGGCCTCCTCCGCCATGGAGCTCTCCCTCCTCAACCCGGCGGCAATGCGCGGCCTCTCCGCCGCCAAGCCCCGCGTCGTGTCTTCCAGGCGCATCGTGCGGTTCCGCGTGGCGTCGTCAGCCGCGGCGCCGCCCGCGGCGAAGCCCGGGACGCCCAAGAAGCGCGGGAAGACGGAGATCCAGGAGACGCTGCTGACGCCGCGGTTCTACACCACGGACTTCGACGAGATGGAGCGGCTGTTCAACGCCGAGATCAACAAGCAGCTCAACCAGGAGGAGTTCGACGCGCTGCTGCAGGAGTTCAAGACGGACTATAACCAGACCCACTTCGTCCGCAACCCGGAGTTCAAGGCCGCCGCCGACAAGATGGAGGGGCCTCTCAGGCAGATCTTCGTCGAGTTCCTCGAGCGCTCCTGCACCGCGGAGTTCTCCGGGTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGAAAACAAACCCAGTGGTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTCTTGACCAAGGCTAGGAAGTACACCTTCTTCAAGCCCAAGTTCATCTTCTACGCGACCTACCTGTCGGAGAAGATTGGGTACTGGAGGTACATCACCATCTTCAGGCACCTCAAGGCGAACCCGGAGTACCAGGTGTACCCCATCTTCAAGTACTTTGAGAACTGGTGCCAGGATGAGAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAAGGGATTGGTCTGGACACCAAAGAATTCGACATGCATGTGATAATTGAGACCAACCGCACAACAGCAAGGATTTTCCCCGCTGTTCTTGACGTCGAGAACCCTGAATTCAAGAGGAAGTTAGACAGGATGGTGGAGATCAACAAAAAGATCATTGCCATAGGCGAGTCTGACGATATCCCCCTGGTGAAGAACCTGAAGAGGATTCCTCACGTTGCCGCTCTGGTGTCTGAGATCATTGCTGCGTACCTCATGCCCCCAATCGAGTCTGGCTCTGTTGATTTCGCTGAATTCGAGCCCCAGCTTGTCTACTGA - >LOC_Os01g17170.2
ATGGCCTCCTCCGCCATGGAGCTCTCCCTCCTCAACCCGGCGGCAATGCGCGGCCTCTCCGCCGCCAAGCCCCGCGTCGTGTCTTCCAGGCGCATCGTGCGGTTCCGCGTGGCGTCGTCAGCCGCGGCGCCGCCCGCGGCGAAGCCCGGGACGCCCAAGAAGCGCGGGAAGACGGAGATCCAGGAGACGCTGCTGACGCCGCGGTTCTACACCACGGACTTCGACGAGATGGAGCGGCTGTTCAACGCCGAGATCAACAAGCAGCTCAACCAGGAGGAGTTCGACGCGCTGCTGCAGGAGTTCAAGACGGACTATAACCAGACCCACTTCGTCCGCAACCCGGAGTTCAAGGCCGCCGCCGACAAGATGGAGGGGCCTCTCAGGCAGATCTTCGTCGAGTTCCTCGAGCGCTCCTGCACCGCGGAGTTCTCCGGGTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGAAAACAAACCCAGTGGTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTCTTGACCAAGGCTAGGAAGTACACCTTCTTCAAGCCCAAGTTCATCTTCTACGCGACCTACCTGTCGGAGAAGATTGGGTACTGGAGGTACATCACCATCTTCAGGCACCTCAAGGCGAACCCGGAGTACCAGGTGTACCCCATCTTCAAGTACTTTGAGAACTGGTGCCAGGATGAGAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAAGGGATTGGTCTGGACACCAAAGAATTCGACATGCATGTGATAATTGAGACCAACCGCACAACAGCAAGGATTTTCCCCGCTGTTCTTGACGTCGAGAACCCTGAATTCAAGAGGAAGTTAGACAGGATGGTGGAGATCAACAAAAAGATCATTGCCATAGGCGAGTCTGACGATATCCCCCTGGTGAAGAACCTGAAGAGGATTCCTCACGTTGCCGCTCTGGTGTCTGAGATCATTGCTGCGTACCTCATGCCCCCAATCGAGTCTGGCTCTGTTGATTTCGCTGAATTCGAGCCCCAGCTTGTCTACTGA
Protein Sequence
- >LOC_Os01g17170.1
MASSAMELSLLNPAAMRGLSAAKPRVVSSRRIVRFRVASSAAAPPAAKPGTPKKRGKTEIQETLLTPRFYTTDFDEMERLFNAEINKQLNQEEFDALLQEFKTDYNQTHFVRNPEFKAAADKMEGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIFRHLKANPEYQVYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTTFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVEINKKIIAIGESDDIPLVKNLKRIPHVAALVSEIIAAYLMPPIESGSVDFAEFEPQLVY* - >LOC_Os01g17170.2
MASSAMELSLLNPAAMRGLSAAKPRVVSSRRIVRFRVASSAAAPPAAKPGTPKKRGKTEIQETLLTPRFYTTDFDEMERLFNAEINKQLNQEEFDALLQEFKTDYNQTHFVRNPEFKAAADKMEGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIFRHLKANPEYQVYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTTFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVEINKKIIAIGESDDIPLVKNLKRIPHVAALVSEIIAAYLMPPIESGSVDFAEFEPQLVY*