Information report for RDD1
Gene Details
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Functional Descriptions
- In addition, RDD1-AS plants were smaller and flowered later than WT or RDD1-S plants; decreases in grain length, width and 1000-grain weight were also recorded.
- This study demonstrates that RDD1 is a circadian clock and phy-regulated gene, which is associated with grain size in rice.
- Circadian clock- and phytochrome-regulated Dof-like gene, RDD1, is associated with grain size in rice.
- We report here on the characterization of a putative Dof transcription factor gene in rice (Oryza sativa)–rice Dof daily fluctuations 1 (RDD1).
- Moreover, the overexpression of RDD1 increased nitrogen responsiveness and grain productivity.
- Our results suggest that RDD1 can contribute to the increased grain productivity of rice via inducing the efficient uptake and accumulation of various nutrient ions.
- MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice.
- Here, we show that the transcription factor encoding gene RDD1 plays a role in improving the uptake and accumulation of various nutrient ions in rice.
- In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.
- The transcription factor-encoding gene RDD1 increases the uptake of nutrient ions, photosynthetic activity under ambient and high CO(2) conditions, and grain productivity, and microRNA166 (miR166) regulates its transcript levels.
- These results suggest that the in-frame mutagenesis of RDD1 to suppress miR166-RDD1 transcript pairing contributes to the improved grain appearance of rice.
Functional Keywords
- flower , grain , grain-size , grain-length , grain-weight , transcription-factor , nitrogen , grain-quality , quality
Literature and News
- Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice . DOI: 10.1111/j.1365-3040.2009.01954.x ; PMID: 19210638
- MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice . DOI: 10.1111/tpj.13117 ; PMID: 26729506
- In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice . DOI: 10.1038/s41598-022-14768-9 ; PMID: 35750704
Gene Resources
- NCBI ID: AP001383
Sequences
cDNA Sequence
- >LOC_Os01g15900.1
AAGAGCAATCCCCTCTGAAATGAAATTTCTCGTGCTCTTTTTTGTTCCCATTTCGTCCCATGCGTAGAGGAGACTAGCTTAGCTAGTTTTATTTCCAAATTAGCCCCTCTCGTCTTCTCTTCTCTCGCCGCTCCGGTCAGCGGCTGCGGCGGCGGCGGCGGAGGATCACGGTGGTTGTCGGGTTGTTGGTGGGTGAGGGGGGATCGAGGATGTGTGACAAGGATCCGGGCATAAAGCTCTTCGGGCGGGTGATCCCGCTGGCTCCAGAGGCTGAGGCTGCTGCGGCGGCGGACGGCTCCGACCAGCCGGAGGCGGCGGCGGCGGCGGCGGCGGAGGTTGAGCCGGCGGCGCAGGATGAGGATCATCACAAGGAAACAGAAGAAAGAAAATATGATGAAATGAAGGTTGATGTGCCACAAGAGGAGGAAGATAACGAAATGAAGGTCGATGCACCACAAGAGAAAAAGGATAATGAAGTGACGGCTGATGTGCCAGAAGAGAAGGGAAATGATGAAATGAGGGTTGATGCATCAGAGTCAATAGAAAGCATAGAGCCAGTCAGCAGATCTACCTTGGACAATAAAAAAGAAGATCAGGGTCAGATGAACAACGTTGAAGAGAAAGCAGCATCAGACTCAAAAGATGAAAATGAAAAGACAGCAAATGATGAATCAGGCCAGGACAAAGTACTTAAGAAGCCAGATAAGATTCTCCCTTGCCCTCGGTGCAACAGTATGGACACAAAGTTTTGTTATTACAACAACTACAATGTTAATCAACCCAGGCACTTCTGTAAGAACTGCCAAAGGTATTGGACTGCCGGGGGAACCATGAGAAATGTACCTGTTGGTGCTGGGAGGCGCAAAAGCAAGAGCTCATCGTTGCACTACCGTCACTTACTGATGGCCCCTGATTGCATGATGGGGTCTAGAGTGGAAATATCCAAGTCAATGAACCCTGAAGCTTTCGCATCTGCGCATTCGACCCCTATACAACCAATTGGCAGAAACGAAACAGTTCTCAAATTTGGGCCTGAGGTGCCACTCTGTGAATCGATGGCATCAGTGCTGAACATTCAGGAGCAGAATGGAACCAATGCTGCAGCAGTACCAACGGGTGAAAATCAGGAAGATAACTCTTGCATCTCTTCAATCACATCACACAACGTGTTACCTGAAAATGCAGCCCAAGTTGACAAGAACAGCACGCCGGTGTATTGCAACGGAGTCGGCCCAGTGCCGCAGTACTACCTTGGAGCTCCTTACATGTACCCATGGAACATAGGATGGAACAACGTTCCTATGATGGTGCCAGGTACAAGCATGCCAGAGTCTGCTTCCCAATCTGAGAGCTGCAGCACCAGTTCAGCTCCATGGATGAACATGAACTCCCCCATGATGCCGGTTGCCTCGAGGCTTTCTGCACCACCATTTCCATACCCTCTAGTGCCACCTGCACTATGGGGTTGCTTATCCAGCTGGCCGGCCACGGCATGGAACATACCGTGGATCAGAACGAATGGCGGCTGCATGTCTCCATCGTCGTCGAGCAACAGCAGCTGTTCAGGCAATGGCTCCCCTCTGGGGAAGCATTCCAGGGACTCCTCTCTCCCACTGAAGGAGGACAAGGAGGAGAAATCACTGTGGGTTCCCAAGACGCTCCGCATCGACGATCCCGACGAGGCGGCGAAGAGCTCCATCTGGGCCACCCTGGGGATCAAGCCTGGAGACCCTGGCATCTTCAAGCCGTTCCAGTCCAAAGGTGAGAGCAAAGGCCAAGCAGCATCAGAGACTCGTCCTGCTCGTGCTCTTAAGGCAAACCCAGCTGCATTGTCGCGGTCGCAGTCGTTCCAGGAGACTTCTTGACTCTTTACCTGTTGAATTTCCTATAGTTTTTGTCAGCACAGTGTGTGTACTGTAAAATGTGTATAGCAGTAGAGGTTTTGCGGTATTCAGAAGGATCAGGAGAGAGCTTTTTGTGCAGCCACTAACTTGAGGTGGATAGGAGTTGCAAAGGGCTTTCATGAGAAACTACATCGAGATGTATATGTATTGTAAATACTTGACAAACTGGTTGTGTACATCTAGGTTAAGTCAGGAAAATACACTCACCTGGTTTAGCTCTCCTAGTATATTATACTACATTGGTATGTCTATCTTTGTTTTTGAAGAAAAAAAAGGAGTGCAAAAGATTCAGATTAATCAATCTAACCACACTTGATTTGATTC
CDS Sequence
- >LOC_Os01g15900.1
ATGTGTGACAAGGATCCGGGCATAAAGCTCTTCGGGCGGGTGATCCCGCTGGCTCCAGAGGCTGAGGCTGCTGCGGCGGCGGACGGCTCCGACCAGCCGGAGGCGGCGGCGGCGGCGGCGGCGGAGGTTGAGCCGGCGGCGCAGGATGAGGATCATCACAAGGAAACAGAAGAAAGAAAATATGATGAAATGAAGGTTGATGTGCCACAAGAGGAGGAAGATAACGAAATGAAGGTCGATGCACCACAAGAGAAAAAGGATAATGAAGTGACGGCTGATGTGCCAGAAGAGAAGGGAAATGATGAAATGAGGGTTGATGCATCAGAGTCAATAGAAAGCATAGAGCCAGTCAGCAGATCTACCTTGGACAATAAAAAAGAAGATCAGGGTCAGATGAACAACGTTGAAGAGAAAGCAGCATCAGACTCAAAAGATGAAAATGAAAAGACAGCAAATGATGAATCAGGCCAGGACAAAGTACTTAAGAAGCCAGATAAGATTCTCCCTTGCCCTCGGTGCAACAGTATGGACACAAAGTTTTGTTATTACAACAACTACAATGTTAATCAACCCAGGCACTTCTGTAAGAACTGCCAAAGGTATTGGACTGCCGGGGGAACCATGAGAAATGTACCTGTTGGTGCTGGGAGGCGCAAAAGCAAGAGCTCATCGTTGCACTACCGTCACTTACTGATGGCCCCTGATTGCATGATGGGGTCTAGAGTGGAAATATCCAAGTCAATGAACCCTGAAGCTTTCGCATCTGCGCATTCGACCCCTATACAACCAATTGGCAGAAACGAAACAGTTCTCAAATTTGGGCCTGAGGTGCCACTCTGTGAATCGATGGCATCAGTGCTGAACATTCAGGAGCAGAATGGAACCAATGCTGCAGCAGTACCAACGGGTGAAAATCAGGAAGATAACTCTTGCATCTCTTCAATCACATCACACAACGTGTTACCTGAAAATGCAGCCCAAGTTGACAAGAACAGCACGCCGGTGTATTGCAACGGAGTCGGCCCAGTGCCGCAGTACTACCTTGGAGCTCCTTACATGTACCCATGGAACATAGGATGGAACAACGTTCCTATGATGGTGCCAGGTACAAGCATGCCAGAGTCTGCTTCCCAATCTGAGAGCTGCAGCACCAGTTCAGCTCCATGGATGAACATGAACTCCCCCATGATGCCGGTTGCCTCGAGGCTTTCTGCACCACCATTTCCATACCCTCTAGTGCCACCTGCACTATGGGGTTGCTTATCCAGCTGGCCGGCCACGGCATGGAACATACCGTGGATCAGAACGAATGGCGGCTGCATGTCTCCATCGTCGTCGAGCAACAGCAGCTGTTCAGGCAATGGCTCCCCTCTGGGGAAGCATTCCAGGGACTCCTCTCTCCCACTGAAGGAGGACAAGGAGGAGAAATCACTGTGGGTTCCCAAGACGCTCCGCATCGACGATCCCGACGAGGCGGCGAAGAGCTCCATCTGGGCCACCCTGGGGATCAAGCCTGGAGACCCTGGCATCTTCAAGCCGTTCCAGTCCAAAGGTGAGAGCAAAGGCCAAGCAGCATCAGAGACTCGTCCTGCTCGTGCTCTTAAGGCAAACCCAGCTGCATTGTCGCGGTCGCAGTCGTTCCAGGAGACTTCTTGA
Protein Sequence
- >LOC_Os01g15900.1
MCDKDPGIKLFGRVIPLAPEAEAAAAADGSDQPEAAAAAAAEVEPAAQDEDHHKETEERKYDEMKVDVPQEEEDNEMKVDAPQEKKDNEVTADVPEEKGNDEMRVDASESIESIEPVSRSTLDNKKEDQGQMNNVEEKAASDSKDENEKTANDESGQDKVLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSSSLHYRHLLMAPDCMMGSRVEISKSMNPEAFASAHSTPIQPIGRNETVLKFGPEVPLCESMASVLNIQEQNGTNAAAVPTGENQEDNSCISSITSHNVLPENAAQVDKNSTPVYCNGVGPVPQYYLGAPYMYPWNIGWNNVPMMVPGTSMPESASQSESCSTSSAPWMNMNSPMMPVASRLSAPPFPYPLVPPALWGCLSSWPATAWNIPWIRTNGGCMSPSSSSNSSCSGNGSPLGKHSRDSSLPLKEDKEEKSLWVPKTLRIDDPDEAAKSSIWATLGIKPGDPGIFKPFQSKGESKGQAASETRPARALKANPAALSRSQSFQETS*