Gene Details:
- MSU gene ID: LOC_Os01g08420
- RAPdb gene ID: Os01g0179400
- Gene Symbol: SSG4
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- In this study, we report a novel rice (Oryza sativa) mutant called substandard starch grain4 (SSG4) that develops enlarged SGs in the endosperm.
- Enlargement of SGs in SSG4 was also observed in other starch-accumulating tissues such as pollen grains, root caps, and young pericarps.
- SSG4 will be a useful molecular tool for future starch breeding and biotechnology.
- The results of this study suggest that SSG4 influences the regulation of starch and lipid metabolism as well as amyloplast development, a finding that is useful for potential genetic improvement of rice grain quality in future starch and lipid breeding and biotechnology.
Function-related keywords:
Literature:
- Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm . DOI: 10.1104/pp.113.229591 ; PMID: 24335509
- Substandard starch grain4 may function in amyloplast development by influencing starch and lipid metabolism in rice endosperm . DOI: 10.1016/j.jplph.2022.153638 ; PMID: 35149441
Related News:
Gene Resources:
- NCBI ID: AB856288
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os01g08420.1
GGAATTAAACTTAACCAACTTATGCTGGCACCACAATCTACTGGTTTTCTTTCCATATCACCAGATTCTATAATGTTAAATGCTACAGGCAGACCCGATGAAAATTTTTCCATAGAAGTGAATGTGCCATTATTTTTTGGCACACACGAGGCCATTCAAGACGGAAGGCTGTTGTCAATATTCCTCCAAAAGGGGCAGCTGAGATCTAATATCTGCTATCACCCTGAAAATTTGACTAGTTTGGAGGTTCGAAATTTGCCACTTGATGAGCTGGAGTTTGCTTCATTACGTGGGTTTGTTCAGAAGGCAGAACTCCAGCTTAATTTCCAGAAAAGAAGAGGTCATGGTTTGCTGTCAGTTATCCGCCCAAAATTTAGTGGCATGCTTGGGGAATCACTTGATATAGCTGCTCGATGGAGTGGTGATGTTATTACTATGGAAAAATCAGTCCTAGAGCAAGCTAATAGCAAGTATGAACTTCAAGGGGAGTATGTTTTTCCTGGAACACGTGATAGATTCCCTATGGAAAGTCAGAGTAATGGTTTCATAGAGAAAGCGATGGGAGGGCATCTTGGTAGCATGATGTCTTCGATGGGCAGGTGGAGGATGAGATTAGAAGTACCTGGTGCTGAAGTAGCTGAAATGCTTCCGTTGGCAAGACTTCTATCACGAAGTACAGACCCAGCTATTCGTTCCAGATCAAAGGAACTTTTTATGCAAACTTTGCATTCTGTTGGATTCAATGCTGAAAGTCTTCGTGACCAGCTAAAGGCATTAGAAATGTATCCTGATTGGTTGGATGATGATACAATTGAGGATATAACTCTTCCTGGCTTAGCTGAACTGAGAGGTTATTGGCGTGGTTCTCTTGATGCCAGTGGTGGAGGGAACGGCGATACTATGGCTGATTTTGATTTCAATGGTGAAGATTGGGAGTGGGGCACTTACAAGACACAGCGTGTTCTGGCATCTGGTTCATTCAGCAATAATGATGGCCTGCGTCTTGATAAGTTATTTATTCAGAAGGATAATGCCACTCTTCATGCTGATGGATCAATTCTTGGCCCATTAACAAATCTTCACTTTGCTGTGCTTAATTTCCCAGTTGGTCTTATACCCGCATTAGTTCAGGCTATAGAATCATCAACCACAGACTCGATTCATTTTCTGAGGCAATGGTTGACACCAATCAAAGGCATTCTACATATGGAGGGAGATTTGAGAGGTACTCTAGCAAAGCCTGAATGTGATGTTCAAATAAGACTTCTTGATGGCACCATTGGAGGCATTGATCTCGGAAGAGCTGAAGTATTAGCTTCTGTAACCCCAACAAGCCGTTTTGTTTTTGATGCAAACTTCGAACCGACCATACAAAGTGGGCACGTTAACATTCAAGGTAGTGTTCCTGTTACTTATGTAGACAGCAACTCCATTGAGGAAGACCTGGAAGGGGGAGATGGTAAACAAGGTATAATAAGAATCCCTGTTTGGGCGAAAGACAGAGGCTTGACAAATGACATCAGCGAAACAAGAATCATGAGAGACAAGCCTGATGAGGGTTGGGAGTTTCAATTAGCTGAAAGCCTAAAGGGTTTAAGCTGGAATATGCTAGAACCAGGCGAAGTGAGAATAAATGCAGATATAAAGGATGGGGGTATGACACTGATAACTGCACTGAGTCCTTACTCAAACTGGCTTCAAGGCTATGCTGAAGTTCTTCTCCAGGTTAAAGGCACTGTTGATCACCCTGTTGTTGATGGGTCTGCCTCATTTCACCGTGCAACCGTGGCTTCTCCTTTCCTTCGGACACCACTGACAAATTTCGCTGGCAATGTTCATGTTATATCTAACAGACTATGTATCAGTTCCATGGAAAGCAGAGTTGGGAGGAAAGGGAGATTGTCAATGAAAGGGACTCTACCTCTCCACAATATTGAGCCATCAGCCAATGACAAGATTGAACTGAAATGCGAAGTTCTGGACATACGAGCAAAAAATATTTTGAGTGGCCAAGTAGACAGCCAGCTGCAGGTTACAGGCTCAATATTGCGGCCAGATGTCTCTGGAATGATTCGGCTAAGCCATGGTGAAGCGTATTTGCCTCATGATAAAGGCAATGGTGCTGTTGCCACCAGGCTGTCTTCAAATAAATCCATCTCTGTTCCTGCTGGTTTTGACCAAAGAACAGTCTCACGAGATGTCTCCCACTTTCTAGGATCACTATCAACTAGTCCAGACGGCCAACAATCAGAAACTGAAAGGACTCCTGAACATGGAAGTTTTAAGCCAAACATTGATGCCCGACTCAATGATCTGAAGCTCACATTTGGACCTGAATTAAGGATTGTTTATCCTTTAATTTTGAATTTTGCTGTGAGTGGCGACCTTGAGCTTAATGGCATGGTTCATCCGAAGTACATAAGACCTAAGGGTGTCTTAACTTTTGAAAATGGTGAGGTCAATTTGGTTGCTACTCAGGTAAGACTTAAAAATGATCATTTGAATGTAGCAAAGTTTGAGCCAGATCTTGGTTTGGATCCTATTCTGGATCTTGTTCTTGTTGGATCTGAGTGGCAATTTAAGATCCAAAGTCGAGCAAGCATGTGGCAAGACAATCTTGTTGTAACCTCCACACGCTCTGTGGACCAGGATGTTCTTTCACCTAGTGAGGCTGCAAAGGTTTTTGAGTCACAGCTTGCGGAGTCACTATTGGAAGGTGATGGACAGCTCGCGTTCAAGAAACTCGCAACTGCAACACTCGAAACTTTGATGCCAAGGATTGAAGGCAAGGGTGAATTTGGTCAAGCACGGTGGCGACTGGTTTATGCACCGCAGATTCCGAGTTTACTATCTGTAGATCCAACGGTTGACCCACTTAAATCGCTGGCAAACAATATATCTTTTGCTACTGAGGTCGAAGTGCAACTTGGAAAACGCCTTCAGGCCTCTGTTGTCAGGCAGATGAAAGATTCAGAAATGGCAATGCAGTGGTCACTCATATATCAGCTAACCAGCAGGCTCCGTGTTCTCTTCCAATCTACGCCGTCCAATCGACTTCTCTTCGAGTACTCTGCAACATCCCAGGGTTGATTCATTTTTGCCCACTACACAGAGCAGGAGCTGTGGAATGGCAGCTGGTCTGTACAAAGATGTGGCGCACCGACACCGATCAATTGTTCTTGTAGATAATGGAAGTTTTGATAGGCAGGCAGTTGTACATGTAGACTTGCTGATGTTTTTGCTCTTTGTTGTATCTACATTCTTTTTCTCGGAAACAAAGTTTCTGGGTTTGTACATAGGTAGCAAATTTTAGCTCCTTTAGCTAGTTAACGTAAGATGTAAAGAACTACCTGCATAAATTATATGAAAATTTCCAATCTCGTGGAGTCGA
CDS Sequence
- >LOC_Os01g08420.1
ATGCTGGCACCACAATCTACTGGTTTTCTTTCCATATCACCAGATTCTATAATGTTAAATGCTACAGGCAGACCCGATGAAAATTTTTCCATAGAAGTGAATGTGCCATTATTTTTTGGCACACACGAGGCCATTCAAGACGGAAGGCTGTTGTCAATATTCCTCCAAAAGGGGCAGCTGAGATCTAATATCTGCTATCACCCTGAAAATTTGACTAGTTTGGAGGTTCGAAATTTGCCACTTGATGAGCTGGAGTTTGCTTCATTACGTGGGTTTGTTCAGAAGGCAGAACTCCAGCTTAATTTCCAGAAAAGAAGAGGTCATGGTTTGCTGTCAGTTATCCGCCCAAAATTTAGTGGCATGCTTGGGGAATCACTTGATATAGCTGCTCGATGGAGTGGTGATGTTATTACTATGGAAAAATCAGTCCTAGAGCAAGCTAATAGCAAGTATGAACTTCAAGGGGAGTATGTTTTTCCTGGAACACGTGATAGATTCCCTATGGAAAGTCAGAGTAATGGTTTCATAGAGAAAGCGATGGGAGGGCATCTTGGTAGCATGATGTCTTCGATGGGCAGGTGGAGGATGAGATTAGAAGTACCTGGTGCTGAAGTAGCTGAAATGCTTCCGTTGGCAAGACTTCTATCACGAAGTACAGACCCAGCTATTCGTTCCAGATCAAAGGAACTTTTTATGCAAACTTTGCATTCTGTTGGATTCAATGCTGAAAGTCTTCGTGACCAGCTAAAGGCATTAGAAATGTATCCTGATTGGTTGGATGATGATACAATTGAGGATATAACTCTTCCTGGCTTAGCTGAACTGAGAGGTTATTGGCGTGGTTCTCTTGATGCCAGTGGTGGAGGGAACGGCGATACTATGGCTGATTTTGATTTCAATGGTGAAGATTGGGAGTGGGGCACTTACAAGACACAGCGTGTTCTGGCATCTGGTTCATTCAGCAATAATGATGGCCTGCGTCTTGATAAGTTATTTATTCAGAAGGATAATGCCACTCTTCATGCTGATGGATCAATTCTTGGCCCATTAACAAATCTTCACTTTGCTGTGCTTAATTTCCCAGTTGGTCTTATACCCGCATTAGTTCAGGCTATAGAATCATCAACCACAGACTCGATTCATTTTCTGAGGCAATGGTTGACACCAATCAAAGGCATTCTACATATGGAGGGAGATTTGAGAGGTACTCTAGCAAAGCCTGAATGTGATGTTCAAATAAGACTTCTTGATGGCACCATTGGAGGCATTGATCTCGGAAGAGCTGAAGTATTAGCTTCTGTAACCCCAACAAGCCGTTTTGTTTTTGATGCAAACTTCGAACCGACCATACAAAGTGGGCACGTTAACATTCAAGGTAGTGTTCCTGTTACTTATGTAGACAGCAACTCCATTGAGGAAGACCTGGAAGGGGGAGATGGTAAACAAGGTATAATAAGAATCCCTGTTTGGGCGAAAGACAGAGGCTTGACAAATGACATCAGCGAAACAAGAATCATGAGAGACAAGCCTGATGAGGGTTGGGAGTTTCAATTAGCTGAAAGCCTAAAGGGTTTAAGCTGGAATATGCTAGAACCAGGCGAAGTGAGAATAAATGCAGATATAAAGGATGGGGGTATGACACTGATAACTGCACTGAGTCCTTACTCAAACTGGCTTCAAGGCTATGCTGAAGTTCTTCTCCAGGTTAAAGGCACTGTTGATCACCCTGTTGTTGATGGGTCTGCCTCATTTCACCGTGCAACCGTGGCTTCTCCTTTCCTTCGGACACCACTGACAAATTTCGCTGGCAATGTTCATGTTATATCTAACAGACTATGTATCAGTTCCATGGAAAGCAGAGTTGGGAGGAAAGGGAGATTGTCAATGAAAGGGACTCTACCTCTCCACAATATTGAGCCATCAGCCAATGACAAGATTGAACTGAAATGCGAAGTTCTGGACATACGAGCAAAAAATATTTTGAGTGGCCAAGTAGACAGCCAGCTGCAGGTTACAGGCTCAATATTGCGGCCAGATGTCTCTGGAATGATTCGGCTAAGCCATGGTGAAGCGTATTTGCCTCATGATAAAGGCAATGGTGCTGTTGCCACCAGGCTGTCTTCAAATAAATCCATCTCTGTTCCTGCTGGTTTTGACCAAAGAACAGTCTCACGAGATGTCTCCCACTTTCTAGGATCACTATCAACTAGTCCAGACGGCCAACAATCAGAAACTGAAAGGACTCCTGAACATGGAAGTTTTAAGCCAAACATTGATGCCCGACTCAATGATCTGAAGCTCACATTTGGACCTGAATTAAGGATTGTTTATCCTTTAATTTTGAATTTTGCTGTGAGTGGCGACCTTGAGCTTAATGGCATGGTTCATCCGAAGTACATAAGACCTAAGGGTGTCTTAACTTTTGAAAATGGTGAGGTCAATTTGGTTGCTACTCAGGTAAGACTTAAAAATGATCATTTGAATGTAGCAAAGTTTGAGCCAGATCTTGGTTTGGATCCTATTCTGGATCTTGTTCTTGTTGGATCTGAGTGGCAATTTAAGATCCAAAGTCGAGCAAGCATGTGGCAAGACAATCTTGTTGTAACCTCCACACGCTCTGTGGACCAGGATGTTCTTTCACCTAGTGAGGCTGCAAAGGTTTTTGAGTCACAGCTTGCGGAGTCACTATTGGAAGGTGATGGACAGCTCGCGTTCAAGAAACTCGCAACTGCAACACTCGAAACTTTGATGCCAAGGATTGAAGGCAAGGGTGAATTTGGTCAAGCACGGTGGCGACTGGTTTATGCACCGCAGATTCCGAGTTTACTATCTGTAGATCCAACGGTTGACCCACTTAAATCGCTGGCAAACAATATATCTTTTGCTACTGAGGTCGAAGTGCAACTTGGAAAACGCCTTCAGGCCTCTGTTGTCAGGCAGATGAAAGATTCAGAAATGGCAATGCAGTGGTCACTCATATATCAGCTAACCAGCAGGCTCCGTGTTCTCTTCCAATCTACGCCGTCCAATCGACTTCTCTTCGAGTACTCTGCAACATCCCAGGGTTGA
Protein Sequence
- >LOC_Os01g08420.1
MLAPQSTGFLSISPDSIMLNATGRPDENFSIEVNVPLFFGTHEAIQDGRLLSIFLQKGQLRSNICYHPENLTSLEVRNLPLDELEFASLRGFVQKAELQLNFQKRRGHGLLSVIRPKFSGMLGESLDIAARWSGDVITMEKSVLEQANSKYELQGEYVFPGTRDRFPMESQSNGFIEKAMGGHLGSMMSSMGRWRMRLEVPGAEVAEMLPLARLLSRSTDPAIRSRSKELFMQTLHSVGFNAESLRDQLKALEMYPDWLDDDTIEDITLPGLAELRGYWRGSLDASGGGNGDTMADFDFNGEDWEWGTYKTQRVLASGSFSNNDGLRLDKLFIQKDNATLHADGSILGPLTNLHFAVLNFPVGLIPALVQAIESSTTDSIHFLRQWLTPIKGILHMEGDLRGTLAKPECDVQIRLLDGTIGGIDLGRAEVLASVTPTSRFVFDANFEPTIQSGHVNIQGSVPVTYVDSNSIEEDLEGGDGKQGIIRIPVWAKDRGLTNDISETRIMRDKPDEGWEFQLAESLKGLSWNMLEPGEVRINADIKDGGMTLITALSPYSNWLQGYAEVLLQVKGTVDHPVVDGSASFHRATVASPFLRTPLTNFAGNVHVISNRLCISSMESRVGRKGRLSMKGTLPLHNIEPSANDKIELKCEVLDIRAKNILSGQVDSQLQVTGSILRPDVSGMIRLSHGEAYLPHDKGNGAVATRLSSNKSISVPAGFDQRTVSRDVSHFLGSLSTSPDGQQSETERTPEHGSFKPNIDARLNDLKLTFGPELRIVYPLILNFAVSGDLELNGMVHPKYIRPKGVLTFENGEVNLVATQVRLKNDHLNVAKFEPDLGLDPILDLVLVGSEWQFKIQSRASMWQDNLVVTSTRSVDQDVLSPSEAAKVFESQLAESLLEGDGQLAFKKLATATLETLMPRIEGKGEFGQARWRLVYAPQIPSLLSVDPTVDPLKSLANNISFATEVEVQLGKRLQASVVRQMKDSEMAMQWSLIYQLTSRLRVLFQSTPSNRLLFEYSATSQG*