Gene Details:
- Gene ID: Gh_D13G2437
- Gene Symbol: Gh_D13G2437
- Gene Name:
- Genome: TM1_NBI
- Species: Gossypium hirsutum
Functional Descriptions:
- Gh_D13G2437 encodes a Ran-Binding Protein 1 (RanBP1) that preferentially expresses during cotton fiber elongation.
- The abundance of siRNA produced from Gh_D13G2437 reciprocally corresponds with the abundance of highly homologous (68%–98% amino acid sequence identity) RanBP1 family transcripts during fiber elongation, resulting in a shorter fiber phenotype in the Li2.
- Overexpression of Gh_D13G2437 in the Li2 mutant recovered the long lint fiber phenotype.
- Only Gh_D13G2437 showed substantially lower expression in the short fiber cells relative to the long fibers from the same plant, which suggested that this gene could be responsible for the short fiber phenotype in the Li2 mutant.
Function-related keywords:
Literature:
- A deletion/duplication in the Ligon lintless-2 locus induces siRNAs that inhibit cotton fiber cell elongation. DOI: 10.1093/plphys/kiac384 ; PMID: 35997586
Related News:
Gene Resources:
Orthologs:
Sequences:
cDNA Sequence
CDS Sequence
- >Gh_D13G2437
ATGGCAAGCAAAGAACCAGATCACGAGCACAGAGAAGACGAGGATGCCGCCCCCGCCGAGGAAGAAGACACCGGAGCTCAAATTGCCCCTATCATCAAGCTCGAGGAAGTCGCCGTCAGCACCGGCGAGGAAAACGAAGATCCGATGCTCGATCTGAAGTCGAAGCTCTACCGATTTGATAAAGAAGGCAATCAATGGAAAGAGAGAGGCGCTGGTACTGTGAAGCTGTTGAAGCACAAAGAGACTGGAAAAGTTCGCCTTGTTATGAGGCAATCTAAGACTCTCAAGATCTGCGCCAATCATTTAGTGTTGCCGACTATGACGGTGCAGGAGCACGCAGGGAACGACAAATCGTGCCTGTGGCACGCTTCTGACTACGCTGATGGTGAATTGAAAGATGAACTGTTCTGCATTCGTTTTGCATCTGTGGAAAATTGCAAAACCTTCATGCAAATGTTCCAAGAAGTTGCTGAATCACAAAAACCAAAAGAGGAAAATAAAGATGCATCTGCTGCTGCTGGACTGCTGGAGAAGTTGAGCGTTGATGAAAAGAAGACCGAGGATAAAGCCGGAGAGGAGAAAAAGGAAACAGAAGCCACAGAAAAGGCAGATACCGAGAAGAAAGATGGGGAGGCAGCTTCCTCAACTTAA
Protein Sequence
- >Gh_D13G2437
MASKEPDHEHREDEDAAPAEEEDTGAQIAPIIKLEEVAVSTGEENEDPMLDLKSKLYRFDKEGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLVLPTMTVQEHAGNDKSCLWHASDYADGELKDELFCIRFASVENCKTFMQMFQEVAESQKPKEENKDASAAAGLLEKLSVDEKKTEDKAGEEKKETEATEKADTEKKDGEAASST