Information report for GhHDA5
Gene Details
|
|
Functional Descriptions
- The reduced expression of GhHDA5 also suppresses fiber initiation and lint yield in the RNA interference (RNAi) lines.
- The 0 DPA ovules of GhHDA5RNAi lines also showed alterations in reactive oxygen species homeostasis and elevated autophagic cell death in the developing fibers.
- GhAPL and GhHDA5 are related to the early maturity in cotton. The findings provide a basis for the further functional verification of candidate genes related to the NFFB and contribute to the study of early maturity in cotton.
- Our functional genomics study identified GhHDA5 as a potential gene that modulated histone acetylation dynamics during fiber initiation.
- The positively co-expressed genes with GhHDA5 showed cumulative higher expression during fiber initiation, and gene ontology annotation suggests their involvement in fiber development.
Functional Keywords
Literature and News
- Role of GhHDA5 in H3K9 deacetylation and fiber initiation in Gossypium hirsutum. DOI: 10.1111/tpj.14011 ; PMID: 29952050
- QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.). DOI: 10.1186/s12864-021-08164-2 ; PMID: 34872494
Sequences
cDNA Sequence
CDS Sequence
- >Gh_D03G0906
ATGATGGAGGAGGGATCAGGTGGGGGCAGGAGTAACTACAACCGCATGAACGATGCCAAAAATGAACGGCGGGTAGGCTTAATTTACGATCAGAGGATGTGTAAGCATCGAACTCCTTATGGCGATGATCATCCCGAGAAACCTGATCGAATCACTGTTATATGGAACAAGCTTGAACTCGCCGGCATTCCGCAAAGATGTGTGATTTTAAATGCAAAAGAAGCCAAGGATGAATATATTTGCGCTGTTCACTCCAAAAACCATGTTAATCTGATTCGAAATATAAGCTCCAAAGAGTATTCAAAGCGAAATCGGATTGCTTCCAAGTTAAATTCTATATATTTGAATGAAGGATCATCAGAGTCTGCATACCTTGCAGCCGGCTCTGTCATTGAGGTTGCTGAGAAAGTGGCAAAAGGGGAATTGAATTCTGCTTTTGCTATTGTTAGGCCACCTGGACATCATGCTGAATATGATGAAGCAATGGGGTTTTGTTTATTCAACAATATAGCCATAGCAGCAAGTTTTCTACTTGATCAAAGGCCTGAACTTGGTATAAACAAGATTTTGATAGTTGATTGGGATGTTCATCATGGTAATGGTACTCAAAAAACTTTTTGGAGTGATCCTCGTGTTCTTTTCTTTTCTGTTCACAGACATGAGTTTGGTAGGTTTTACCCTGCTAATTTTGATGGGTTTTACACCATGGTTGGAGAAGGGCCAGGTGCAGGATATAATATAAATGTCCCTTGGGAGAATGGCCGCTGTGGGGATGCTGACTATCTAGCAGTTTGGGACCATGTTTTAGTTCCTGTTGCTAAGGAATTTAATCCTGACATAATTCTAGTGTCTGCAGGGTTTGATGCAGCTTTTGGTGATCCTCTAGGGGGATGTCGGTTAACACCTCATGGATATTCAGTTTTGTTGAAGAAGTTGATGGATTTTGCTCAAGGTAGGATTGTCTTGGCACTAGAAGGAGGATACAATCTTGATTCTCTTGCAAATTCAGCCTTAGCTTGCATGGAAGTTTTGTTAGAAGACAAACCTATTTCCGAATTGTCTGAGGCATATCCATTTGAGTCTACATGGCGCGTAATACAAGCGGTTCGTCAGATGTTGAGTGCATACTGGCCAACATTAGCAGATAAACTGCCAACAAAATTGACTGATCAAAAAGCTCCTCCTCATATTTTACTATCAAGCTCTGAATCTGATGATGAGGATGATGATGCTTCGAAAATCATTTCAAAAGATCTAGTTCAAGCTGTTGAGGATGTTGTAGAACCCATTTTGAATTTGAAGATTGAAGATTATCATGGTAATGAAGTGAAGAATGAAGTAAATAGTGCCCTGTGGAGATCAAAGCTATCCAAGACTGACATTTGGTATGCCGGTTTCGGATCAAATATGTGGAAGTCAAGGTTCCTCTGCTATATTGAAGGTGGACAGGTCATAGGCATGAAAAAGCTGTGTTCTGGTTCTGTGGATAGAAACCCTCCAAAGGAGACTCGCTGGAAAACTTTTCCTCATCGTCTTTTCTTTGGTCGTGATTTTACACAAACTTGGGGTCCCGGAGGGGTTGCTTTCCTTGATCCTCGAAGCAACAGTGAAGATAAAGCATACATGTTAGAGCAGTTCAATGATGTTCTGCTGCAGGAAAATGTTCCTGATCATGACATGAATTCTCCTTTATTTGATCTAAATGCTTTAGACTCTATACTCAATGAAGGTTCAATTCCTGTGGAGGCTGTCAAGAGAGGTTGGTACCATAATGTTGTCTACCTTGGAATGGAGGATGATATACCTATACTGACTATGACATACGCTTAA
Protein Sequence
- >Gh_D03G0906
MMEEGSGGGRSNYNRMNDAKNERRVGLIYDQRMCKHRTPYGDDHPEKPDRITVIWNKLELAGIPQRCVILNAKEAKDEYICAVHSKNHVNLIRNISSKEYSKRNRIASKLNSIYLNEGSSESAYLAAGSVIEVAEKVAKGELNSAFAIVRPPGHHAEYDEAMGFCLFNNIAIAASFLLDQRPELGINKILIVDWDVHHGNGTQKTFWSDPRVLFFSVHRHEFGRFYPANFDGFYTMVGEGPGAGYNINVPWENGRCGDADYLAVWDHVLVPVAKEFNPDIILVSAGFDAAFGDPLGGCRLTPHGYSVLLKKLMDFAQGRIVLALEGGYNLDSLANSALACMEVLLEDKPISELSEAYPFESTWRVIQAVRQMLSAYWPTLADKLPTKLTDQKAPPHILLSSSESDDEDDDASKIISKDLVQAVEDVVEPILNLKIEDYHGNEVKNEVNSALWRSKLSKTDIWYAGFGSNMWKSRFLCYIEGGQVIGMKKLCSGSVDRNPPKETRWKTFPHRLFFGRDFTQTWGPGGVAFLDPRSNSEDKAYMLEQFNDVLLQENVPDHDMNSPLFDLNALDSILNEGSIPVEAVKRGWYHNVVYLGMEDDIPILTMTYA