Gene Details:

Functional Descriptions:

  • Identification of ST1 reveals a selection involving hitchhiking of seed morphology and oil content during soybean domestication.
  • This morphological change concurrently boosted seed oil content, which, along with up-regulation of glycolysis biosynthesis modulated by ST1, enabled soybean to become a staple oil crop.
  • ST1 and an inversion controlling seed coat colour formed part of a single selective sweep.
  • Structural variation analysis of the region surrounding ST1 shows that the critical mutation in ST1 existed in earlier wild relatives of soybean and the region containing ST1 subsequently underwent an inversion, which was followed by successive selection for both traits through hitchhiking during selection for seed coat colour.
  • ST1 (Seed Thickness 1), affecting seed thickness and encoding a UDP-D-glucuronate 4-epimerase, which catalyses UDP-galacturonic acid production and promotes pectin biosynthesis.

Literature:

Gene Resources:

Sequences:

cDNA Sequence
  • >Glyma.08G109100.1
    AATTGGCCATGCATGTGTGTGTGTGTGGTAGTGAGAAGAATTGAGAAAAAGAATGTGGTCTCCAAAGTCCAACCAATACAAATCTCTAGCTCTCCCTCCCTCTCTCTTGTATCCCTTTATATGAATCTTCTCAGACACGTTTTCGAGAGCCCCTTTTTCCTTATCATAGCCTCGCAGCAGCTGATATCTCATGTTGTTCTTGTTCCTAACAAAGTAGCATTAAAAACCATGGCATCTTCACCGGACACCAGCAAAACCATAAAGCTGATGCGTTACAACAGCTACCTCCGCAGACTCAACAGCTTCAAACTCCTTAAGACATCCTTCATCCTCCTCCTCCTCCTCTACACCCTCTCCACCCACCACCTCCTCCTCTCCTCCGCCTTCCACGGCCCCGCATGGGAGAATCAGGTCCGCCACTCCGCCCTCCCCCGCCGCCCCCACGGCATGTCGGTGCTGGTCACCGGCGCGGCGGGCTTCGTTGGCTCCCACTGCTCCCTCTCCCTGAAGAAGCGCGGCGACGGCGTCCTCGGGCTCGACAACTTCAACTCCTACTACGACCCCTCCCTAAAACGCGCACGCCAGCACCTCCTCGCCAAACACCAAATCCTCATCATCGAAGCCGACCTAAACGACGCCCCGTTGCTCGCCAAGATCTTCGACGTCGTTTCGTTCTCCCACGTCCTCCACCTCGCAGCACAAGCGGGCGTCCGCTACGCCATGCAGAACCCCCACTCCTACGTGGCATCCAACATCGCCGGATTCGTAACTCTTCTAGAAGCTTCCAAAAACGCTAACCCCCAGCCCGCCATCGTTTGGGCCTCCTCGAGTTCCGTCTATGGGCTCAATGACGAAAGCCCATTCTCCGAACTCCACCGTACGGACCAGCCTGCGAGCCTCTACGCGGCAACTAAAAAAGCAGGCGAAGCAATCGCGCACACCTATAATCATATCTATGGACTCTCCCTCACCGGATTGCGCTTCTTCACTGTTTATGGGCCCTGGGGAAGGCCCGACATGGCTTACTTTTTCTTCACTAAGTCCATTCTCCAGAGAAAGCCCATTGACGTGTACCAGACGCATGACGAGAGAGAAGTCGCGCGTGACTTCACTTACATCGACGACGTCGTCAAGGGCTGCCTCGGTGCCCTCGACACGGCGGAGAAGAGCACCGGCGGCGTCGTAGGGAAGAAGCGCGGCCCCGCGCAGCTGAGAGTTTACAATCTCGGTAACACATCGCCGGTGCCGGTGGGTAAACTTGTTTCCGTGTTGGAGACGTTGCTCGGGGTAAAGGCGAAGAAGCACGTGATCAAAATGCCTCGAAACGGCGACGTTCCGTTCACGCATGCTAACGTGAGCTTGGCGTGGAGGGACTTGGGGTACAAGCCCACCACGGATCTCGCCGCTGGTCTCAGAAAGTTCGTGCAGTGGTACGTCGGGTATTATGGTGTTCGCTTAGGGGTAGAAAAGGAAAAACACGCAGACTTGGCTTGATTCATCCTTTCCGTGCCCCTCCATTCATTTATTATAATTATATGTTTTTTTGTTGAAACTTGTGAATGGTGCTGGCGGCCCATGTGAGAATGCATAATCATGATTTGGTATTTTAATAAAATGCTAGTTGCATCCAGTAT
CDS Sequence
  • >Glyma.08G109100.1
    ATGTGTGTGTGTGTGGTAGTGAGAAGAATTGAGAAAAAGAATGTGGTCTCCAAAGTCCAACCAATACAAATCTCTAGCTCTCCCTCCCTCTCTCTTGTATCCCTTTATATGAATCTTCTCAGACACGTTTTCGAGAGCCCCTTTTTCCTTATCATAGCCTCGCAGCAGCTGATATCTCATGTTGTTCTTGTTCCTAACAAAGTAGCATTAAAAACCATGGCATCTTCACCGGACACCAGCAAAACCATAAAGCTGATGCGTTACAACAGCTACCTCCGCAGACTCAACAGCTTCAAACTCCTTAAGACATCCTTCATCCTCCTCCTCCTCCTCTACACCCTCTCCACCCACCACCTCCTCCTCTCCTCCGCCTTCCACGGCCCCGCATGGGAGAATCAGGTCCGCCACTCCGCCCTCCCCCGCCGCCCCCACGGCATGTCGGTGCTGGTCACCGGCGCGGCGGGCTTCGTTGGCTCCCACTGCTCCCTCTCCCTGAAGAAGCGCGGCGACGGCGTCCTCGGGCTCGACAACTTCAACTCCTACTACGACCCCTCCCTAAAACGCGCACGCCAGCACCTCCTCGCCAAACACCAAATCCTCATCATCGAAGCCGACCTAAACGACGCCCCGTTGCTCGCCAAGATCTTCGACGTCGTTTCGTTCTCCCACGTCCTCCACCTCGCAGCACAAGCGGGCGTCCGCTACGCCATGCAGAACCCCCACTCCTACGTGGCATCCAACATCGCCGGATTCGTAACTCTTCTAGAAGCTTCCAAAAACGCTAACCCCCAGCCCGCCATCGTTTGGGCCTCCTCGAGTTCCGTCTATGGGCTCAATGACGAAAGCCCATTCTCCGAACTCCACCGTACGGACCAGCCTGCGAGCCTCTACGCGGCAACTAAAAAAGCAGGCGAAGCAATCGCGCACACCTATAATCATATCTATGGACTCTCCCTCACCGGATTGCGCTTCTTCACTGTTTATGGGCCCTGGGGAAGGCCCGACATGGCTTACTTTTTCTTCACTAAGTCCATTCTCCAGAGAAAGCCCATTGACGTGTACCAGACGCATGACGAGAGAGAAGTCGCGCGTGACTTCACTTACATCGACGACGTCGTCAAGGGCTGCCTCGGTGCCCTCGACACGGCGGAGAAGAGCACCGGCGGCGTCGTAGGGAAGAAGCGCGGCCCCGCGCAGCTGAGAGTTTACAATCTCGGTAACACATCGCCGGTGCCGGTGGGTAAACTTGTTTCCGTGTTGGAGACGTTGCTCGGGGTAAAGGCGAAGAAGCACGTGATCAAAATGCCTCGAAACGGCGACGTTCCGTTCACGCATGCTAACGTGAGCTTGGCGTGGAGGGACTTGGGGTACAAGCCCACCACGGATCTCGCCGCTGGTCTCAGAAAGTTCGTGCAGTGGTACGTCGGGTATTATGGTGTTCGCTTAGGGGTAGAAAAGGAAAAACACGCAGACTTGGCTTGA
Protein Sequence
  • >Glyma.08G109100.1
    MCVCVVVRRIEKKNVVSKVQPIQISSSPSLSLVSLYMNLLRHVFESPFFLIIASQQLISHVVLVPNKVALKTMASSPDTSKTIKLMRYNSYLRRLNSFKLLKTSFILLLLLYTLSTHHLLLSSAFHGPAWENQVRHSALPRRPHGMSVLVTGAAGFVGSHCSLSLKKRGDGVLGLDNFNSYYDPSLKRARQHLLAKHQILIIEADLNDAPLLAKIFDVVSFSHVLHLAAQAGVRYAMQNPHSYVASNIAGFVTLLEASKNANPQPAIVWASSSSVYGLNDESPFSELHRTDQPASLYAATKKAGEAIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKSILQRKPIDVYQTHDEREVARDFTYIDDVVKGCLGALDTAEKSTGGVVGKKRGPAQLRVYNLGNTSPVPVGKLVSVLETLLGVKAKKHVIKMPRNGDVPFTHANVSLAWRDLGYKPTTDLAAGLRKFVQWYVGYYGVRLGVEKEKHADLA*