Information report for MS2
Gene Details
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Functional Descriptions
- Natural variation of MS2 confers male fertility and drives hybrid breeding in soybean.
- It was reported in the last century that the soybean male sterile MS2 mutant has the highest record with seed set.
- The cloning and characterization of the MS2 gene in soybean, which encodes a protein that is specifically expressed in the anther.
- MS2 functions in the tapetum and microspore by directly regulating genes involved in the biosynthesis of secondary metabolites and the lipid metabolism, which is essential for the formation of microspore cell wall.
- We demonstrated that the MS2 mutant conducts the best in outcrossing rate and makes it an ideal tool in building a cost-effective hybrid system for soybean.
Functional Keywords
- fertility , anther , seed , tapetum , breeding , cell-wall , sterile , microspore , male-fertility , secondary-metabolism , secondary-cell-wall , seed-set , lipid-metabolism
Literature and News
Gene Resources
- NCBI ID: 100798282
- UniProt accessions: I1LF47
- EMBL: CM000843
- EnsemblPlants: KRH36073
- Gramene: KRH36073
- KEGG: gmx:100798282
- GO: GO:0003700 , GO:0005634 , GO:0006355 , GO:0007165 , GO:0043565 , GO:0046983 , GO:0090558 , GO:1901701
- OMA: HPRTKAC
- InterPro: IPR002912 , IPR011598 , IPR025610 , IPR036638 , IPR051358 , IPR054502
- PANTHER: PTHR31945 , PTHR31945:SF11
- SUPFAM: SSF47459
- PROSITE: PS50888 , PS51671
- Gene3D: 4.10.280.10
- OrthoDB: I1LF47
- SMR: I1LF47
- CDD: cd04873 , cd11443
Homologs
- Cajanus cajan: C.cajan_08127
- Cicer arietinum: XP_004497179.1, XP_012570710.1
- Citrullus lanatus: Cla015818
- Cucumis sativus: Cucsa.010660.1
- Gossypium hirsutum: Gh_A12G0337
- Lotus japonicus: Lj5g3v2244610.1
- Manihot esculenta: Manes.04G072000.2.p, Manes.04G072000.1.p
- Medicago truncatula: Medtr1g112680.1
- Populus trichocarpa: Potri.009G136300.1, Potri.009G136300.2
- Prunus mume: XP_016650411.1
- Vitis vinifera: GSVIVT01013720001, GSVIVT01024008001
- Ziziphus jujuba: XP_015893146.1
Sequences
cDNA Sequence
- >Glyma.10G281800.2
ATTGCAAAAATCCCTCCCTCTCTCTCATTCACCCTCTGCAGTTCACCTACCATAGTAACAGCCACATTATACGCTCCAATATTTTTATATATATAAAGATATTGCTATGATTATATTATGATATATAAAGAAGGAAGGAACCGGGTGTGTGCTTTCGATATTGTTTGCATCTTCCTTTCTTCCTAGGCACTGATACAAGGAACTTTGAGTTTGCTGAGATGGGACTTTCGGCATAAGGTGGATATGATTCAAACTTTTGGGTTATGATGGTGCAGTTAACTGTTGCTATCAACTAAGTTTTTTTATGGATATCAGTTTTTGTTTCTTCTGCTACTTCTGGTCTGTTTGTTCTTCAATTTTGCTCTTGCTTTTCTTGCTTTTAGTCAAAGGAAGTAACCATTGCCACTTTGCTTTTGCGAGCTCAAAGAGGAAGTTCCACTATCATCATCCAGGTGAGATGAACATCAGCATGCAACACTTAGTAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTATTGCATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAGCAATCAAAATGCTGGGGAAGAACATCTTTTCCCTGTCTCTTCTGTGGCTTCATGCAGAGATATCACTTATCCACACCCCAGAACAAAGCCCTGTGATCTTCTTTCACAGCTTTCCACTTGCATACCCATAGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTGAACTATTCCAATGGCATGGATCCTAACATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCGGTGCCGGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTGTCTGAAGATCATCAACTAATAGATTTTGTGACAAACCAGTGCATTGAAGCCGTGAACCACTCAATGAGCTTCAACATTGACGTGAGCAACATGCAATCAAACCCACTTATACAAGATGAAAACGAAGGGAACAACAACAGGAACAATAATCACTTATTCCATCCATCAGAACATGTCATCACTGATATGGACCACCGCAATATTGGTCTGTGTAATTCTCAACTGAACTTCATGCAGCAGTTCAACTACAACCAGCACAACAGAATGAAGAGCGATGCTGCTTTCTCTGAAGAATACCAAGCTGGTAATTCCTTCCTTCACGACGAGCAAACCAACCCAGAAGATGATCAGGAGCCTGGGCATGAGCATGACACGTATCAGAAAAGCCTCATGACAACAGATTCACAATACGTGGAGGCAAAAGATCAGAAGCAAGAGGAAGACAAGGACTTGATGAAAAACGTTGTTGGCAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAATTAGATGGAAAGTATAGGAGGAGGAATGGAAAAGGGAACCAATCCAAGAACCTTGTGGCTGAAAGAAAGAGAAGGAAGAAACTCAATGATAGGCTATATAACCTTCGTTCTTTGGTTCCTAGGATCTCTAAGCTGGATAGGGCATCCATTCTTGGAGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATGAATATTGGTGTAGGTGCTGAACTTGGGCCAAATGCTGAACATGATAAGGCCCAAACTGGGTTGCATGTGGGAACATCAGGGAATGGATATGTCTCCAAACAAAAGCAGGAAGGTGCTACTGTCATTGATAAGCAGACCCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTGATAGATGAGAATGAGTATTTTGTGAAGGTTTTCTGTGAGCACAGGCCTGGTGGGTTTGTGAAATTGATGGAAGCGTTGAACACTATTGGCATGGATGTAGTGCATGCCACGGTAACCAGCCACACGGGACTCGTCTCAAATGTTTTTAAAGTGGAAAAAAAGGATAATGAAACGGTTGAGGCTGAAGATGTAAGAGACTCACTGCTAGAGCTTACGCGGAACCGTTATAGAGGGTGGACTCATGAGATGACAGCAACGCCGGAAAATGGGGTGGGAAGGGATCAACATCAACTTCACAACCACCAGCAGATAGGTGCCTACCCGCACCAGTTTCATAGTTAACCTTTGATCGACCATCATGTGTTCTCTCATTATAAACTTTGTTATATTAAACATTTTTAATAATAATTTAGCATGCGTGATTAATATAGAGCTTTCATTACTGGAATAATTTTATTTTACAATCATACAAATGTATGGCAAAACGTTGACAACCCTTAAAAAAACAATTTTTTAAATCATATATATATATATATTTGAGAG - >Glyma.10G281800.1
ATTGCAAAAATCCCTCCCTCTCTCTCATTCACCCTCTGCAGTTCACCTACCATAGTAACAGCCACATTATACGCTCCAATATTTTTATATATATAAAGATATTGCTATGATTATATTATGATATATAAAGAAGGAAGGAACCGGGTGTGTGCTTTCGATATTGTTTGCATCTTCCTTTCTTCCTAGGCACTGATACAAGGAACTTTGAGTTTGCTGAGATGGGACTTTCGGCATAAGGTGGATATGATTCAAACTTTTGGGTTATGATGGTGCAGTTAACTGTTGCTATCAACTAAGTTTTTTTATGGATATCAGTTTTTGTTTCTTCTGCTACTTCTGGTCTGTTTGTTCTTCAATTTTGCTCTTGCTTTTCTTGCTTTTAGTCAAAGGAAGTAACCATTGCCACTTTGCTTTTGCGAGCTCAAAGAGGAAGTTCCACTATCATCATCCAGGTGAGATGAACATCAGCATGCAACACTTAGTAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTATTGCATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAGCAATCAAAATGCTGGGGAAGAACATCTTTTCCCTGTCTCTTCTGTGGCTTCATGCAGAGATATCACTTATCCACACCCCAGAACAAAGCCCTGTGATCTTCTTTCACAGCTTTCCACTTGCATACCCATAGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTGAACTATTCCAATGGCATGGATCCTAACATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCGGTGCCGGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTGTCTGAAGATCATCAACTAATAGATTTTGTGACAAACCAGTGCATTGAAGCCGTGAACCACTCAATGAGCTTCAACATTGACGTGAGCAACATGCAATCAAACCCACTTATACAAGATGAAAACGAAGGGAACAACAACAGGAACAATAATCACTTATTCCATCCATCAGAACATGTCATCACTGATATGGACCACCGCAATATTGGTCTGTGTAATTCTCAACTGAACTTCATGCAGCAGTTCAACTACAACCAGCACAACAGAATGAAGAGCGATGCTGCTTTCTCTGAAGAATACCAAGCTGGTAATTCCTTCCTTCACGACGAGCAAACCAACCCAGAAGATGATCAGGAGCCTGGGCATGAGCATGACACGTATCAGAAAAGCCTCATGACAACAGATTCACAATACGTGGAGGCAAAAGATCAGAAGCAAGAGGAAGACAAGGACTTGATGAAAAACGTTGTTGGCAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAATTAGATGGAAAGTATAGGAGGAGGAATGGAAAAGGGAACCAATCCAAGAACCTTGTGGCTGAAAGAAAGAGAAGGAAGAAACTCAATGATAGGCTATATAACCTTCGTTCTTTGGTTCCTAGGATCTCTAAGCTGGATAGGGCATCCATTCTTGGAGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATGAATATTGGTGTAGGTGCTGAACTTGGGCCAAATGCTGAACATGATAAGGCCCAAACTGGGTTGCATGTGGGAACATCAGGGAATGGATATGTCTCCAAACAAAAGCAGGAAGGTGCTACTGTCATTGATAAGCAGACCCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTGATAGATGAGAATGAGTATTTTGTGAAGGTTTTCTGTGAGCACAGGCCTGGTGGGTTTGTGAAATTGATGGAAGCGTTGAACACTATTGGCATGGATGTAGTGCATGCCACGGTAACCAGCCACACGGGACTCGTCTCAAATGTTTTTAAAGTGGAAAAAAAGGATAATGAAACGGTTGAGGCTGAAGATGTAAGAGACTCACTGCTAGAGCTTACGCGGAACCGTTATAGAGGGTGGACTCATGAGATGACAGCAACGCCGGAAAATGGGGTGGGAAGGGATCAACATCAACTTCACAACCACCAGCAGATAGGTGCCTACCCGCACCAGTTTCATAGTTAACCTTTGATCGACCATCATGTGTTCTCTCATTATAAACTTTGTTATATTAAACATTTTTAATAATAATTTAGCATGCGTGATTAATATAGAGCTTTCATTACTGGAATAATTTTATTTTACAATCATACAAATGTATGGCAAAACGTTGACAACCCTTAAAAAAACAATTTTTTAAATCATATATATATATATATTTGAGAG
CDS Sequence
- >Glyma.10G281800.2
ATGGATATCAGTTTTTGTTTCTTCTGCTACTTCTGGTCTGTTTGTTCTTCAATTTTGCTCTTGCTTTTCTTGCTTTTAGTCAAAGGAAGTAACCATTGCCACTTTGCTTTTGCGAGCTCAAAGAGGAAGTTCCACTATCATCATCCAGGTGAGATGAACATCAGCATGCAACACTTAGTAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTATTGCATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAGCAATCAAAATGCTGGGGAAGAACATCTTTTCCCTGTCTCTTCTGTGGCTTCATGCAGAGATATCACTTATCCACACCCCAGAACAAAGCCCTGTGATCTTCTTTCACAGCTTTCCACTTGCATACCCATAGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTGAACTATTCCAATGGCATGGATCCTAACATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCGGTGCCGGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTGTCTGAAGATCATCAACTAATAGATTTTGTGACAAACCAGTGCATTGAAGCCGTGAACCACTCAATGAGCTTCAACATTGACGTGAGCAACATGCAATCAAACCCACTTATACAAGATGAAAACGAAGGGAACAACAACAGGAACAATAATCACTTATTCCATCCATCAGAACATGTCATCACTGATATGGACCACCGCAATATTGGTCTGTGTAATTCTCAACTGAACTTCATGCAGCAGTTCAACTACAACCAGCACAACAGAATGAAGAGCGATGCTGCTTTCTCTGAAGAATACCAAGCTGGTAATTCCTTCCTTCACGACGAGCAAACCAACCCAGAAGATGATCAGGAGCCTGGGCATGAGCATGACACGTATCAGAAAAGCCTCATGACAACAGATTCACAATACGTGGAGGCAAAAGATCAGAAGCAAGAGGAAGACAAGGACTTGATGAAAAACGTTGTTGGCAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAATTAGATGGAAAGTATAGGAGGAGGAATGGAAAAGGGAACCAATCCAAGAACCTTGTGGCTGAAAGAAAGAGAAGGAAGAAACTCAATGATAGGCTATATAACCTTCGTTCTTTGGTTCCTAGGATCTCTAAGCTGGATAGGGCATCCATTCTTGGAGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATGAATATTGGTGTAGGTGCTGAACTTGGGCCAAATGCTGAACATGATAAGGCCCAAACTGGGTTGCATGTGGGAACATCAGGGAATGGATATGTCTCCAAACAAAAGCAGGAAGGTGCTACTGTCATTGATAAGCAGACCCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTGATAGATGAGAATGAGTATTTTGTGAAGGTTTTCTGTGAGCACAGGCCTGGTGGGTTTGTGAAATTGATGGAAGCGTTGAACACTATTGGCATGGATGTAGTGCATGCCACGGTAACCAGCCACACGGGACTCGTCTCAAATGTTTTTAAAGTGGAAAAAAAGGATAATGAAACGGTTGAGGCTGAAGATGTAAGAGACTCACTGCTAGAGCTTACGCGGAACCGTTATAGAGGGTGGACTCATGAGATGACAGCAACGCCGGAAAATGGGGTGGGAAGGGATCAACATCAACTTCACAACCACCAGCAGATAGGTGCCTACCCGCACCAGTTTCATAGTTAA - >Glyma.10G281800.1
ATGGATATCAGTTTTTGTTTCTTCTGCTACTTCTGGTCTGTTTGTTCTTCAATTTTGCTCTTGCTTTTCTTGCTTTTAGTCAAAGGAAGTAACCATTGCCACTTTGCTTTTGCGAGCTCAAAGAGGAAGTTCCACTATCATCATCCAGGTGAGATGAACATCAGCATGCAACACTTAGTAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTATTGCATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAGCAATCAAAATGCTGGGGAAGAACATCTTTTCCCTGTCTCTTCTGTGGCTTCATGCAGAGATATCACTTATCCACACCCCAGAACAAAGCCCTGTGATCTTCTTTCACAGCTTTCCACTTGCATACCCATAGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTGAACTATTCCAATGGCATGGATCCTAACATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCGGTGCCGGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTGTCTGAAGATCATCAACTAATAGATTTTGTGACAAACCAGTGCATTGAAGCCGTGAACCACTCAATGAGCTTCAACATTGACGTGAGCAACATGCAATCAAACCCACTTATACAAGATGAAAACGAAGGGAACAACAACAGGAACAATAATCACTTATTCCATCCATCAGAACATGTCATCACTGATATGGACCACCGCAATATTGGTCTGTGTAATTCTCAACTGAACTTCATGCAGCAGTTCAACTACAACCAGCACAACAGAATGAAGAGCGATGCTGCTTTCTCTGAAGAATACCAAGCTGGTAATTCCTTCCTTCACGACGAGCAAACCAACCCAGAAGATGATCAGGAGCCTGGGCATGAGCATGACACGTATCAGAAAAGCCTCATGACAACAGATTCACAATACGTGGAGGCAAAAGATCAGAAGCAAGAGGAAGACAAGGACTTGATGAAAAACGTTGTTGGCAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAATTAGATGGAAAGTATAGGAGGAGGAATGGAAAAGGGAACCAATCCAAGAACCTTGTGGCTGAAAGAAAGAGAAGGAAGAAACTCAATGATAGGCTATATAACCTTCGTTCTTTGGTTCCTAGGATCTCTAAGCTGGATAGGGCATCCATTCTTGGAGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATGAATATTGGTGTAGGTGCTGAACTTGGGCCAAATGCTGAACATGATAAGGCCCAAACTGGGTTGCATGTGGGAACATCAGGGAATGGATATGTCTCCAAACAAAAGCAGGAAGGTGCTACTGTCATTGATAAGCAGACCCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTGATAGATGAGAATGAGTATTTTGTGAAGGTTTTCTGTGAGCACAGGCCTGGTGGGTTTGTGAAATTGATGGAAGCGTTGAACACTATTGGCATGGATGTAGTGCATGCCACGGTAACCAGCCACACGGGACTCGTCTCAAATGTTTTTAAAGTGGAAAAAAAGGATAATGAAACGGTTGAGGCTGAAGATGTAAGAGACTCACTGCTAGAGCTTACGCGGAACCGTTATAGAGGGTGGACTCATGAGATGACAGCAACGCCGGAAAATGGGGTGGGAAGGGATCAACATCAACTTCACAACCACCAGCAGATAGGTGCCTACCCGCACCAGTTTCATAGTTAA
Protein Sequence
- >Glyma.10G281800.2
MDISFCFFCYFWSVCSSILLLLFLLLVKGSNHCHFAFASSKRKFHYHHPGEMNISMQHLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTESNQNAGEEHLFPVSSVASCRDITYPHPRTKPCDLLSQLSTCIPIDNSGIHAQTLLTNQPNWVNYSNGMDPNILEETIGTQVLISVPGGLVELFVTKQVSEDHQLIDFVTNQCIEAVNHSMSFNIDVSNMQSNPLIQDENEGNNNRNNNHLFHPSEHVITDMDHRNIGLCNSQLNFMQQFNYNQHNRMKSDAAFSEEYQAGNSFLHDEQTNPEDDQEPGHEHDTYQKSLMTTDSQYVEAKDQKQEEDKDLMKNVVGRSDSMSDCSDQNEEEELDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCMNIGVGAELGPNAEHDKAQTGLHVGTSGNGYVSKQKQEGATVIDKQTQQMEPQVEVALIDENEYFVKVFCEHRPGGFVKLMEALNTIGMDVVHATVTSHTGLVSNVFKVEKKDNETVEAEDVRDSLLELTRNRYRGWTHEMTATPENGVGRDQHQLHNHQQIGAYPHQFHS* - >Glyma.10G281800.1
MDISFCFFCYFWSVCSSILLLLFLLLVKGSNHCHFAFASSKRKFHYHHPGEMNISMQHLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTESNQNAGEEHLFPVSSVASCRDITYPHPRTKPCDLLSQLSTCIPIDNSGIHAQTLLTNQPNWVNYSNGMDPNILEETIGTQVLISVPGGLVELFVTKQVSEDHQLIDFVTNQCIEAVNHSMSFNIDVSNMQSNPLIQDENEGNNNRNNNHLFHPSEHVITDMDHRNIGLCNSQLNFMQQFNYNQHNRMKSDAAFSEEYQAGNSFLHDEQTNPEDDQEPGHEHDTYQKSLMTTDSQYVEAKDQKQEEDKDLMKNVVGRSDSMSDCSDQNEEEELDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCMNIGVGAELGPNAEHDKAQTGLHVGTSGNGYVSKQKQEGATVIDKQTQQMEPQVEVALIDENEYFVKVFCEHRPGGFVKLMEALNTIGMDVVHATVTSHTGLVSNVFKVEKKDNETVEAEDVRDSLLELTRNRYRGWTHEMTATPENGVGRDQHQLHNHQQIGAYPHQFHS*