Information report for GmJAG1;GmJAGGED1
Gene Details
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Functional Descriptions
- The number of seeds per pod (NSPP) is one of the critical components that affect soybean yield (Liu et al., 2020). Ln, which encodes GmJAGGED1 (GmJAG1), is a major locus regulating NSPP and leaflet shape in soybean.
- CRISPR/Cas9 knockout of GmJAG1 is effective in introducing ln-related beneficial traits into the varieties in low latitudes.
- CRISPR/Cas9-mediated gene editing of GmJAGGED1 increased yield in the low-latitude soybean variety Huachun 6.
- Ln, which encodes GmJAGGED1 (GmJAG1), is a major locus regulating NSPP and leaflet shape in soybean.
- A single base pair substitution of the Ln locus from guanine (G) to cytosine (C) led to an amino acid change in the conserved EAR motif of GmJAG1, resulting in the loss of function of GmJAG1 and ln.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: 102661548
- UniProt accessions: K7N2W4
- EMBL: CM000853 , JX119212
- AlphaFoldDB: K7N2W4
- EnsemblPlants: KRG90823
- Gramene: KRG90823
- GO: GO:0003700 , GO:0008270
- OMA: MNDYYVG
- InterPro: IPR013087 , IPR036236 , IPR045320
- PANTHER: PTHR45730 , PTHR45730:SF32
- SUPFAM: SSF57667
- PROSITE: PS00028 , PS50157
- Gene3D: 3.30.160.60
Sequences
cDNA Sequence
- >Glyma.20G116200.3
CGAGACCCACTGTCCAATTATTCATTCAATTTTTGTGTGGGGGGGCGGGGGGAGATAAGAGAGAGAGAGAGAGTGGCAGAGGAACTGATAGAGAACTTTCAAAGCTCTTTATCTTCTACCATCACTCAACCAGCCTCTATATTGCAGTCTCAAACTGAAAGTCTAAATTTTTTTGTAAAAAGCTTTAGTTTTATCCCTACCCCCACCCCATCTGAAAGAAAGAGTGTTTGCCTCACATCATTTTTCCCCTTTCTGTCTCTCTCTCTGTCGGTACCATGAGACCAGAACGAAACCCCTTAGATCTTAACAATTTGCCCGATGAGTACTCTAGAGATGGCAAACAAGTCCTCGAAGACCATACCTCTTCATCCGTTGCAGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACGCTGAACCAGGCTCGTCAACTGGTCTTTCGTTGTGATCATAACATTGCTGCACAAGGTGCCCCTCACTTAGGATGCTGCCAAACAATAGGAACGGGGGGTTATCATCCCTCAGGAGACCCAACAGTGCCTCTAAGATTCCCAAGATACTTCTCAGGTTCATCCTCAACTCACATGCCACCATCCCCGCCACCGCCGCCGCCACCGCAACGACCATACCTATACCCTTCACCTACGAGGCCAGTGTCATTTGGGTCATCACACTTCCCTCTCCAGCATGCAGTGAACGATTACTATGTGGGCCACGTGATGAGTGGTGGCAGCCACGGACACTATGTTGGAGGAGAGAGCACAAGGAGTTACACGTGCATTGGTGCACCGGTGGGGCAAGGTGGCGGATTCGCTGGTGGTAAGGAGGGGTCTGCAGTGCAGGAGGAAGGGTTGAGTACTTGGGGAAGGGGCTATTCAGGTGCACAGGATCGTTTGGATCCTCCCTCAGCGATCAATCGGTTTCAAGATGGTTTCTAAAGAGATGAGAGATTCTTTGTTTGAGTGGTTTTTGGTTTGTGTTATGTTTCTGTTATGTTATGTGGTATCATCATAAAGACACGCAATCCAGAGAGAGAGAGAGGTGGTTTTTGGTTTATCTACAGTAACCAGGGACAGCTTTTGAGCTCATGGACACGCTCAGCTACTTTGGCTTGGAGTTGTGGGTGGGATTTCTTCTCAACATCGCCTTTTGTATTGGTAGCTAGCTAGCTAGCTTGGACAACCAGTTAGATTTGAACTGAAACTTTCCAAACTCCTTTTCCTTTGCATGCCAAATTACAACCATTTTCCTTCTCAGTAATTTGTTCTTTCAATATCCTTCTATTATATTACACTAGTAACTAGTAAGTAATATCTATCTCTGTTACTATTTTATATATACATCCTTCTATTTTA - >Glyma.20G116200.1
CGAGACCCACTGTCCAATTATTCATTCAATTTTTGTGTGGGGGGGCGGGGGGAGATAAGAGAGAGAGAGAGAGTGGCAGAGGAACTGATAGAGAACTTTCAAAGCTCTTTATCTTCTACCATCACTCAACCAGCCTCTATATTGCAGTCTCAAACTGAAAGTCTAAATTTTTTTGTAAAAAGCTTTAGTTTTATCCCTACCCCCACCCCATCTGAAAGAAAGAGTGTTTGCCTCACATCATTTTTCCCCTTTCTGTCTCTCTCTCTGTCGGTACCATGAGACCAGAACGAAACCCCTTAGATCTTAACAATTTGCCCGATGAGTACTCTAGAGATGGCAAACAAGTCCTCGAAGACCATACCTCTTCATCCGTTGCAGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACGCTGAACCAGGCTCGTCAACTGGTCTTTCGTTGTGATCATAACATTGCTGCACAAGGTGCCCCTCACTTAGGATGCTGCCAAACAATAGGAACGGGGGGTTATCATCCCTCAGGAGACCCAACAGTGCCTCTAAGATTCCCAAGATACTTCTCAGGTTCATCCTCAACTCACATGCCACCATCCCCGCCACCGCCGCCGCCACCGCAACGACCATACCTATACCCTTCACCTACGAGGCCAGTGTCATTTGGGTCATCACACTTCCCTCTCCAGCATGCAGTGAACGATTACTATGTGGGCCACGTGATGAGTGGTGGCAGCCACGGACACTATGTTGGAGGAGAGAGCACAAGGAGTTACACGTGCATTGGTGCACCGGTGGGGCAAGGTGGCGGATTCGCTGGTGGTAAGGAGGGGTCTGCAGTGCAGGAGGAAGGGTTGAGTACTTGGGGAAGGGGCTATTCAGGTGCACAGGATCGTTTGGATCCTCCCTCAGCGATCAATCGGTTTCAAGATGGTTTCTAAAGAGATGAGAGATTCTTTGTTTGAGTGGTTTTTGGTTTGTGTTATGTTTCTGTTATGTTATGTGGTATCATCATAAAGACACGCAATCCAGAGAGAGAGAGAGGTGGTTTTTGGTTTATCTACAGTAACCAGGGACAGCTTTTGAGCTCATGGACACGCTCAGCTACTTTGGCTTGGAGTTGTGGGTGGGATTTCTTCTCAACATCGCCTTTTGTATTGGTAGCTAGCTAGCTAGCTTGGACAACCAGTTAGATTTGAACTGAAACTTTCCAAACTCCTTTTCCTTTGCATGCCAAATTACAACCATTTTCCTTCTCAGTAATTTGTTCTTTCAATATCCTTCTATTATATTACACTAGTAACTAGTAAGTAATATCTATCTCTGTTACTATTTTATATATACATCCTTCTATTTTA
CDS Sequence
- >Glyma.20G116200.3
ATGAGACCAGAACGAAACCCCTTAGATCTTAACAATTTGCCCGATGAGTACTCTAGAGATGGCAAACAAGTCCTCGAAGACCATACCTCTTCATCCGTTGCAGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACGCTGAACCAGGCTCGTCAACTGGTCTTTCGTTGTGATCATAACATTGCTGCACAAGGTGCCCCTCACTTAGGATGCTGCCAAACAATAGGAACGGGGGGTTATCATCCCTCAGGAGACCCAACAGTGCCTCTAAGATTCCCAAGATACTTCTCAGGTTCATCCTCAACTCACATGCCACCATCCCCGCCACCGCCGCCGCCACCGCAACGACCATACCTATACCCTTCACCTACGAGGCCAGTGTCATTTGGGTCATCACACTTCCCTCTCCAGCATGCAGTGAACGATTACTATGTGGGCCACGTGATGAGTGGTGGCAGCCACGGACACTATGTTGGAGGAGAGAGCACAAGGAGTTACACGTGCATTGGTGCACCGGTGGGGCAAGGTGGCGGATTCGCTGGTGGTAAGGAGGGGTCTGCAGTGCAGGAGGAAGGGTTGAGTACTTGGGGAAGGGGCTATTCAGGTGCACAGGATCGTTTGGATCCTCCCTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA - >Glyma.20G116200.1
ATGAGACCAGAACGAAACCCCTTAGATCTTAACAATTTGCCCGATGAGTACTCTAGAGATGGCAAACAAGTCCTCGAAGACCATACCTCTTCATCCGTTGCAGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACGCTGAACCAGGCTCGTCAACTGGTCTTTCGTTGTGATCATAACATTGCTGCACAAGGTGCCCCTCACTTAGGATGCTGCCAAACAATAGGAACGGGGGGTTATCATCCCTCAGGAGACCCAACAGTGCCTCTAAGATTCCCAAGATACTTCTCAGGTTCATCCTCAACTCACATGCCACCATCCCCGCCACCGCCGCCGCCACCGCAACGACCATACCTATACCCTTCACCTACGAGGCCAGTGTCATTTGGGTCATCACACTTCCCTCTCCAGCATGCAGTGAACGATTACTATGTGGGCCACGTGATGAGTGGTGGCAGCCACGGACACTATGTTGGAGGAGAGAGCACAAGGAGTTACACGTGCATTGGTGCACCGGTGGGGCAAGGTGGCGGATTCGCTGGTGGTAAGGAGGGGTCTGCAGTGCAGGAGGAAGGGTTGAGTACTTGGGGAAGGGGCTATTCAGGTGCACAGGATCGTTTGGATCCTCCCTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA
Protein Sequence
- >Glyma.20G116200.3
MRPERNPLDLNNLPDEYSRDGKQVLEDHTSSSVAGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVFRCDHNIAAQGAPHLGCCQTIGTGGYHPSGDPTVPLRFPRYFSGSSSTHMPPSPPPPPPPQRPYLYPSPTRPVSFGSSHFPLQHAVNDYYVGHVMSGGSHGHYVGGESTRSYTCIGAPVGQGGGFAGGKEGSAVQEEGLSTWGRGYSGAQDRLDPPSAINRFQDGF* - >Glyma.20G116200.1
MRPERNPLDLNNLPDEYSRDGKQVLEDHTSSSVAGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVFRCDHNIAAQGAPHLGCCQTIGTGGYHPSGDPTVPLRFPRYFSGSSSTHMPPSPPPPPPPQRPYLYPSPTRPVSFGSSHFPLQHAVNDYYVGHVMSGGSHGHYVGGESTRSYTCIGAPVGQGGGFAGGKEGSAVQEEGLSTWGRGYSGAQDRLDPPSAINRFQDGF*