Information report for GmHPPD1
Gene Details
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Functional Descriptions
- GmHPPD1 is a candidate gene for population variation controlling total tocopherol.
- Three known tocopherol biosynthetic genes were identified by the metabolic GWAS strategy: GmHPPD1 was associated with T-T content, and GmMPBQ-MT1 and Gmγ-TMTs were associated with tocopherol composition and/or ratios.
- Both expression levels of tocopherol biosynthetic genes (Gmγ-TMT3, GmHPPD1, GmHPT [Glyma.17G061900], and GmMPBQ-MT1) and α-T content were significantly increased in the GmZF351-OE hairy roots.
Literature and News
Gene Resources
- NCBI ID: 100101901
- UniProt accessions: I1M6Z4
- EMBL: CM000847
- AlphaFoldDB: I1M6Z4
- EnsemblPlants: KRH14507
- Gramene: KRH14507
- GO: GO:0003868 , GO:0006559 , GO:0006572 , GO:0046872
- OMA: DPFPVKG
- InterPro: IPR005956 , IPR029068 , IPR037523 , IPR041735 , IPR041736
- PANTHER: PTHR11959 , PTHR11959:SF1
- SUPFAM: SSF54593
- PROSITE: PS51819
- Gene3D: 3.10.180.10
- OrthoDB: I1M6Z4
- SMR: I1M6Z4
- CDD: cd07250 , cd08342
Sequences
cDNA Sequence
- >Glyma.14G030400.1
GTGGGTAATAAAAAAAGAGAGAAGCCGCATCAACATCATCCAATATATGGACGTTAAAAGAGCGTCGTAATCCATTTCCATTTCTCATCTATCTTCACTTCCTCGTCCTCATCCTCATCCACCTATTCTCAACCCAGACGCAATGCCCATGTACACTCCATCACTCTCCGCACCCTCCTCCAATCACATTCAACCAAGTGTCACACTCCCCTTATATATCACAACCACCAAGCTCAATCTCAAGCAGCAGCATCACACCACACCAATGCCAATACCCATGTGCAACGAAATTCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCAACCTGGGTTTAAGCTCGTCGGTTTCAAAAACTTCGTCCGAACCAATCCTAAGTCGGACCGCTTTCAAGTCAACCGCTTCCACCACATCGAGTTCTGGTGCACCGATGCCACCAACGCCTCTCGCCGATTCTCTTGGGGACTTGGAATGCCTATTGTGGCAAAATCTGATCTCTCCACCGGAAACCAAATCCACGCCTCCTACCTCCTCCGCTCCGGCGACCTCTCCTTCCTCTTCTCCGCTCCTTACTCTCCCTCTCTCTCCGCCGGCTCCTCCGCTGCCTCCTCCGCCTCCATTCCCAGTTTCGACGCCGCCACCTGCCTTGCCTTCGCTGCCAAACACGGCTTCGGCGTCCGCGCCATCGCCTTGGAAGTCGCCGACGCGGAAGCCGCTTTCAGCGCCAGCGTCGCGAAAGGAGCCGAGCCGGCGTCGCCGCCGGTTCTCGTCGACGATCGCACCGGCTTCGCGGAGGTGCGCCTCTACGGCGACGTGGTGCTCCGCTACGTCAGCTACAAGGACGCCGCGCCGCAGGCGCCACACGCAGATCCGTCGCGGTGGTTCCTGCCGGGATTCGAGGCCGCGGCGTCGTCGTCTTCGTTTCCGGAGCTGGACTACGGGATCCGGCGGCTGGACCACGCCGTCGGGAACGTTCCGGAGCTGGCGCCGGCGGTGAGGTACCTGAAAGGCTTCAGCGGATTCCACGAGTTCGCGGAGTTCACCGCGGAGGACGTGGGAACGAGCGAGAGCGGGTTGAACTCGGTGGTTCTGGCGAACAACTCGGAGACGGTGTTGCTGCCGCTGAACGAGCCGGTTTACGGAACGAAGAGGAAGAGCCAGATTGAGACGTATTTGGAACACAACGAAGGTGCTGGTGTGCAGCACCTTGCGCTTGTTACTCACGACATCTTCACCACACTGAGAGAGATGAGAAAGCGAAGTTTCCTTGGTGGATTTGAGTTCATGCCTTCTCCTCCTCCCACCTATTACGCCAACCTCCACAACCGTGCCGCTGATGTGTTGACCGTTGACCAGATTAAGCAGTGTGAGGAGCTTGGGATTCTTGTTGACAGAGATGATCAGGGCACTCTGCTTCAGATTTTCACCAAGCCTGTTGGGGACAGGCCAACGATATTCATAGAGATAATTCAGAGGATCGGGTGCATGGTGGAGGATGAGGAAGGGAAGGTGTACCAGAAGGGTGCATGTGGGGGTTTTGGGAAAGGCAATTTTTCTGAGCTTTTCAAATCCATTGAAGAATATGAGAAGACTTTGGAAGCTAAAAGAACCGCGTAAGCACATTGGAAGAACACAAATACTCCTTTGTTGAAATGATTAATGAGGAATCAATGTGGCATAGGGTGTTTATACTCTATAATACATAGAATTACAATGATAGTGTCCTCCCTTGTATGAAAATGAAATCACAGAAACTTTTATGGATAGTATTTTTCTATTAAATACTTTGAGAGATTACT
CDS Sequence
- >Glyma.14G030400.1
ATGCCCATGTACACTCCATCACTCTCCGCACCCTCCTCCAATCACATTCAACCAAGTGTCACACTCCCCTTATATATCACAACCACCAAGCTCAATCTCAAGCAGCAGCATCACACCACACCAATGCCAATACCCATGTGCAACGAAATTCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCAACCTGGGTTTAAGCTCGTCGGTTTCAAAAACTTCGTCCGAACCAATCCTAAGTCGGACCGCTTTCAAGTCAACCGCTTCCACCACATCGAGTTCTGGTGCACCGATGCCACCAACGCCTCTCGCCGATTCTCTTGGGGACTTGGAATGCCTATTGTGGCAAAATCTGATCTCTCCACCGGAAACCAAATCCACGCCTCCTACCTCCTCCGCTCCGGCGACCTCTCCTTCCTCTTCTCCGCTCCTTACTCTCCCTCTCTCTCCGCCGGCTCCTCCGCTGCCTCCTCCGCCTCCATTCCCAGTTTCGACGCCGCCACCTGCCTTGCCTTCGCTGCCAAACACGGCTTCGGCGTCCGCGCCATCGCCTTGGAAGTCGCCGACGCGGAAGCCGCTTTCAGCGCCAGCGTCGCGAAAGGAGCCGAGCCGGCGTCGCCGCCGGTTCTCGTCGACGATCGCACCGGCTTCGCGGAGGTGCGCCTCTACGGCGACGTGGTGCTCCGCTACGTCAGCTACAAGGACGCCGCGCCGCAGGCGCCACACGCAGATCCGTCGCGGTGGTTCCTGCCGGGATTCGAGGCCGCGGCGTCGTCGTCTTCGTTTCCGGAGCTGGACTACGGGATCCGGCGGCTGGACCACGCCGTCGGGAACGTTCCGGAGCTGGCGCCGGCGGTGAGGTACCTGAAAGGCTTCAGCGGATTCCACGAGTTCGCGGAGTTCACCGCGGAGGACGTGGGAACGAGCGAGAGCGGGTTGAACTCGGTGGTTCTGGCGAACAACTCGGAGACGGTGTTGCTGCCGCTGAACGAGCCGGTTTACGGAACGAAGAGGAAGAGCCAGATTGAGACGTATTTGGAACACAACGAAGGTGCTGGTGTGCAGCACCTTGCGCTTGTTACTCACGACATCTTCACCACACTGAGAGAGATGAGAAAGCGAAGTTTCCTTGGTGGATTTGAGTTCATGCCTTCTCCTCCTCCCACCTATTACGCCAACCTCCACAACCGTGCCGCTGATGTGTTGACCGTTGACCAGATTAAGCAGTGTGAGGAGCTTGGGATTCTTGTTGACAGAGATGATCAGGGCACTCTGCTTCAGATTTTCACCAAGCCTGTTGGGGACAGGCCAACGATATTCATAGAGATAATTCAGAGGATCGGGTGCATGGTGGAGGATGAGGAAGGGAAGGTGTACCAGAAGGGTGCATGTGGGGGTTTTGGGAAAGGCAATTTTTCTGAGCTTTTCAAATCCATTGAAGAATATGAGAAGACTTTGGAAGCTAAAAGAACCGCGTAA
Protein Sequence
- >Glyma.14G030400.1
MPMYTPSLSAPSSNHIQPSVTLPLYITTTKLNLKQQHHTTPMPIPMCNEIQAQAQAQAQAQPGFKLVGFKNFVRTNPKSDRFQVNRFHHIEFWCTDATNASRRFSWGLGMPIVAKSDLSTGNQIHASYLLRSGDLSFLFSAPYSPSLSAGSSAASSASIPSFDAATCLAFAAKHGFGVRAIALEVADAEAAFSASVAKGAEPASPPVLVDDRTGFAEVRLYGDVVLRYVSYKDAAPQAPHADPSRWFLPGFEAAASSSSFPELDYGIRRLDHAVGNVPELAPAVRYLKGFSGFHEFAEFTAEDVGTSESGLNSVVLANNSETVLLPLNEPVYGTKRKSQIETYLEHNEGAGVQHLALVTHDIFTTLREMRKRSFLGGFEFMPSPPPTYYANLHNRAADVLTVDQIKQCEELGILVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRIGCMVEDEEGKVYQKGACGGFGKGNFSELFKSIEEYEKTLEAKRTA*