Information report for GmAFB3A
Gene Details
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Functional Descriptions
- GmTIR1/GmAFB3-based auxin perception regulated by miR393 modulates soybean nodulation.
- GmTIR1 and GmAFB3 genes exhibit diverse expression patterns during nodulation and overexpression of GmTIR1 genes significantly increased inflection foci and eventual nodule number.
- The GmTIR1A, GmTIR1C and GmAFB3A genes are the direct targets of soybean miR393.
- GmTIR1- and GmAFB3-mediated auxin signaling, that is spatio-temporally regulated by miR393, plays a crucial role in determinate nodule development in soybean.
Literature and News
Gene Resources
- NCBI ID: 100812516
- UniProt accessions: I1N7Y8
- EMBL: CM000852
- EnsemblPlants: KRG94665
- Gramene: KRG94665
- GO: GO:0019005 , GO:0031146
- OMA: DWGGYVY
- InterPro: IPR001611 , IPR006553 , IPR032675 , IPR041101 , IPR041567
- PANTHER: PTHR16134 , PTHR16134:SF45
- SUPFAM: SSF52047
- Gene3D: 1.20.1280.50 , 3.80.10.10
- OrthoDB: I1N7Y8
- SMR: I1N7Y8
- CDD: cd22159
Homologs
- Arabidopsis thaliana: AT3G26810
- Brassica napus: BnaC08G0417600ZS
- Cucumis melo: MELO3C015898
- Juglans regia: Jr08_12700
- Lactuca sativa: gene-LSAT_5X188920, gene-LSAT_0X45201
- Manihot esculenta: MANES_05G067800, MANES_01G214300
- Medicago truncatula: Medtr1g088950
- Oryza sativa: OsAFB2
- Prunus avium: Pav_sc0000848.1_g430.1.mk
- Prunus persica: PRUPE_8G253300
- Rosa chinensis: RchiOBHm_Chr6g0292661
- Sesamum indicum: SIN_1012796
- Solanum tuberosum: PGSC0003DMG400011353
- Vitis vinifera: VIT_07s0104g01320
Sequences
cDNA Sequence
- >Glyma.19G100200.1
ACAGCATATACATAGCAGAGAGTGTAAGAGACTTTTAGCAGAGGGTGAGGCTCACTTAGAAAGCAGTGACAAGGACTGATGCATGTTCACGCACTCAACGGTCAAGATTCTCTCAACATCATCAAAAATCGACGCCTACCCTTTCTCTCTTTTCCATTCCAAACTCCCCCAACCAACCATCCATCCATCCATCCATCGTGATCGTGGTTCACTTTGAGTTAGGATAAGGTAACCATGGTTAAATAAATCTACACTCAACCAATTGTGTTGTGTTTACCTTACTTGGTTGCTTTCACTTCTTCCTCTCTGCTTCTTCTTCTTCCTTGCCCTCTCTCGCTATTGAGCTTTTCTTTTTAACACGGAATATGAGTGACACAAAAGGGTTTTGAGGCTTTCTATCACTCTAAAGCTCTTAGCTCATTCACCTCTTGGGTGGTGTGGTCTATTATGTAAATTACCATTTGTGCAATTTTTTCTCAGATCTATCCAACTTCTCTTTTTTATCCTTTATTCTGTTTGCAAATCGCCATCATCACCATTTGATTTGCAAGACCATAATTTTTCTGCTTTGGTTTTCCCCTCTTCCACATCATTTTTCAATTTTTTTTCCTCTGGGTGTTTTCTTCCTGAGAAAATTTTGTTCTTTTTGGCTACCCTCCAAGCAGATCCTACTTGGGAAAAGTAAAATTTTCAGTTTTTTTTTTATCAGTACCCTCTTTTCAGACCTTACCCTCATGTTCTAGATTTGAAGATATTGTCATTACCTCACTCTTATTTGTGCCAAGATCTGCTCCCCCTTTTTCTTCTTTTAGATCTTGGTCTGTTCCATGATGTAGTAGTACTTCAAAGTTGAGAGCTTTACCTTTCTGGGGTTTTGTTTTATTTATTTTTCATCCTCCCCTTTGGAGTATGAAAATTTTCCTGGAAAATTGGGGAGTTTGGATCACTGAGTGAGAGAAAAGAAGAGAGAAAAAAAAGATGATGAATTATTTCCCCGACGAGGTAATAGAGCACATATTTGACTATGTGGTGTCACACAGTGACAGAAATGCTTTGTCTTTGGTGTGCAAAAGTTGGTACAGAATAGAGAGGTGTACGAGGCAAAGGGTGTTCATAGGGAACTGTTACTCCATCACTCCAGAGAGGTTGATCCAGAGGTTTCCTGGTCTAAAGTCTTTGACTTTGAAGGGAAAGCCTCATTTTGCTGACTTCAGTTTGGTGCCTTATGATTGGGGTGGCTTTGTGCATCCATGGGTTGAGGCACTGGCCAAGAGCAGGGTTGGTTTGGAGGAGCTTAGGCTCAAGAGGATGGTGGTCTCGGATGAGAGCCTGGAGCTACTTTCTCGTTCTTTCACACACTTCAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTCTCTACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAGGTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATCACAAAGGCCAATGGCTAAGTTGCTTTCCTGATAACTGCACATCACTTGTTTCTCTTAATTTTGCTTGCCTTAAAGGAGAGGTTAGTTTGGGAGCACTAGAGAGATTTGTGGCCAGATCTCCTAACCTGAAGAGTTTAAAGCTGAATCGTTCGGTGCCCGTTGATGCACTGCAAAGGATAATGATGCGAGCACCTCAACTATCGGATTTGGGTATTGGATCACTTGTCCATGATCCAGAATCGGAGGCCTACATAAAGCTTAAGAATACCATTCTCAAGTGCAAGTCCATAACCAGTTTGTCTGGGTTTTTGGAAGTTGCTCCTCATTGTCTTGCAGCTATATATCCTATTTGCCCGAACTTAACATCTTTGAACTTGAGCTATGCAGCAGGCATTCAGGGAAGTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGGATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGTAAAGATTTGCAAGAATTGAGGGTTTTTCCATCTGTTCCCTTTGGGGATCCAGCAGCTGTCACAGAAAAAGGGCTGGTTGCAATATCAATGGGCTGCCCTAAGCTTCACTCGTTACTCTACTTCTGCCACCAGATGACAAATGCTGCACTCATAACAGTGGCTAAGAACTGCCCAAATTTTATTCGATTCAGGTTGTGTATCCTTGATGCAACAAAACCTGACCCTGATACAATGCAGCCACTGGACGAAGGTTTTGGCGCAATTGTGCAGTCTTGCAGGCGACTCAGGCGCCTATCTCTCTCGGGGAAATTGACTGACCAGGTTTTCCTTTACATAGGAATGTATGCTGAGAAACTTGAAATGCTGTCTATTGCATTTGCTGGGGATGGTGACAAGGGAATGCTGTATGTGTTGAATGGATGCAAGAAGCTTAGGAAGCTTGAGATAAGAGACTGCCCTTTTGGCGACATGGCACTTCTGACGGACGTAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGTGAAGTGACTGTCGGAGCCTGCAAGTTGCTAGCCAAGAAGATGCCAAGGTTGAATGTGGAGATCTTCAATGAAAACGAGCAAGAAGATTGTAGTCTGGAAGATGGGCAGAAGGTAGAGAAGATGTATTTGTATCGTACATTGGCTGGGAAAAGGAAAGATGCACCAGAATATGTATGGACTCTGTAGGTGCATTTTTTAGGTCATTTAATTTCTTGTTATTCAGAAGTTTGTACTTGTTTTTAGGCTGACTGAATTAATGCAATTTTAGCCGGGTGTAGTGTTTTGTAACTTCCTTGCATTTGCTAGTTTTATACATATGTTAGTTTGTCTTTTCTCCTAGATATTATTATTCCATAATGCCACTTTTTATTACGTATATTATTAGAGTATTTTGCTT
CDS Sequence
- >Glyma.19G100200.1
ATGATGAATTATTTCCCCGACGAGGTAATAGAGCACATATTTGACTATGTGGTGTCACACAGTGACAGAAATGCTTTGTCTTTGGTGTGCAAAAGTTGGTACAGAATAGAGAGGTGTACGAGGCAAAGGGTGTTCATAGGGAACTGTTACTCCATCACTCCAGAGAGGTTGATCCAGAGGTTTCCTGGTCTAAAGTCTTTGACTTTGAAGGGAAAGCCTCATTTTGCTGACTTCAGTTTGGTGCCTTATGATTGGGGTGGCTTTGTGCATCCATGGGTTGAGGCACTGGCCAAGAGCAGGGTTGGTTTGGAGGAGCTTAGGCTCAAGAGGATGGTGGTCTCGGATGAGAGCCTGGAGCTACTTTCTCGTTCTTTCACACACTTCAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTCTCTACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAGGTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATCACAAAGGCCAATGGCTAAGTTGCTTTCCTGATAACTGCACATCACTTGTTTCTCTTAATTTTGCTTGCCTTAAAGGAGAGGTTAGTTTGGGAGCACTAGAGAGATTTGTGGCCAGATCTCCTAACCTGAAGAGTTTAAAGCTGAATCGTTCGGTGCCCGTTGATGCACTGCAAAGGATAATGATGCGAGCACCTCAACTATCGGATTTGGGTATTGGATCACTTGTCCATGATCCAGAATCGGAGGCCTACATAAAGCTTAAGAATACCATTCTCAAGTGCAAGTCCATAACCAGTTTGTCTGGGTTTTTGGAAGTTGCTCCTCATTGTCTTGCAGCTATATATCCTATTTGCCCGAACTTAACATCTTTGAACTTGAGCTATGCAGCAGGCATTCAGGGAAGTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGGATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGTAAAGATTTGCAAGAATTGAGGGTTTTTCCATCTGTTCCCTTTGGGGATCCAGCAGCTGTCACAGAAAAAGGGCTGGTTGCAATATCAATGGGCTGCCCTAAGCTTCACTCGTTACTCTACTTCTGCCACCAGATGACAAATGCTGCACTCATAACAGTGGCTAAGAACTGCCCAAATTTTATTCGATTCAGGTTGTGTATCCTTGATGCAACAAAACCTGACCCTGATACAATGCAGCCACTGGACGAAGGTTTTGGCGCAATTGTGCAGTCTTGCAGGCGACTCAGGCGCCTATCTCTCTCGGGGAAATTGACTGACCAGGTTTTCCTTTACATAGGAATGTATGCTGAGAAACTTGAAATGCTGTCTATTGCATTTGCTGGGGATGGTGACAAGGGAATGCTGTATGTGTTGAATGGATGCAAGAAGCTTAGGAAGCTTGAGATAAGAGACTGCCCTTTTGGCGACATGGCACTTCTGACGGACGTAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGTGAAGTGACTGTCGGAGCCTGCAAGTTGCTAGCCAAGAAGATGCCAAGGTTGAATGTGGAGATCTTCAATGAAAACGAGCAAGAAGATTGTAGTCTGGAAGATGGGCAGAAGGTAGAGAAGATGTATTTGTATCGTACATTGGCTGGGAAAAGGAAAGATGCACCAGAATATGTATGGACTCTGTAG
Protein Sequence
- >Glyma.19G100200.1
MMNYFPDEVIEHIFDYVVSHSDRNALSLVCKSWYRIERCTRQRVFIGNCYSITPERLIQRFPGLKSLTLKGKPHFADFSLVPYDWGGFVHPWVEALAKSRVGLEELRLKRMVVSDESLELLSRSFTHFKSLVLVSCEGFSTDGLAAIAANCRFLRELDLQENEVEDHKGQWLSCFPDNCTSLVSLNFACLKGEVSLGALERFVARSPNLKSLKLNRSVPVDALQRIMMRAPQLSDLGIGSLVHDPESEAYIKLKNTILKCKSITSLSGFLEVAPHCLAAIYPICPNLTSLNLSYAAGIQGSALVKLIHHCVKLQRLWIMDCIGDKGLGVVATTCKDLQELRVFPSVPFGDPAAVTEKGLVAISMGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKPDPDTMQPLDEGFGAIVQSCRRLRRLSLSGKLTDQVFLYIGMYAEKLEMLSIAFAGDGDKGMLYVLNGCKKLRKLEIRDCPFGDMALLTDVGKYETMRSLWMSSCEVTVGACKLLAKKMPRLNVEIFNENEQEDCSLEDGQKVEKMYLYRTLAGKRKDAPEYVWTL*