Information report for GmPTF1
Gene Details
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Functional Descriptions
- GmPTF1 modifies root architecture responses to phosphate starvation primarily through regulating GmEXPB2 expression in soybean.
- Demonstrated that GmPTF1, a basic-helix-loop-helix transcription factor, is the regulatory factor responsible for the induction of GmEXPB2 expression in response to Pi starvation.
- Both GmPTF1 and GmEXPB2 highly expressed in lateral roots, and were significantly enhanced by P deficiency.
- This work identifies a novel regulatory factor, GmPTF1, involved in changing soybean root architecture partially through regulation of the expression of GmEXPB2 by binding the E-box motif in its promoter region.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID:
- UniProt accessions: I1N944
- EMBL: CM000852
- AlphaFoldDB: I1N944
- EnsemblPlants: KRG95332
- Gramene: KRG95332
- GO: GO:0003700 , GO:0005634 , GO:0046983
- OMA: GREEVNH
- InterPro: IPR011598 , IPR024097 , IPR036638
- PANTHER: PTHR12565 , PTHR12565:SF112
- SUPFAM: SSF47459
- PROSITE: PS50888
- Gene3D: 4.10.280.10
- OrthoDB: I1N944
- SMR: I1N944
- CDD: cd18919
Homologs
- Arachis hypogaea: Ahy021200
- Cajanus cajan: C.cajan_03586
- Cicer arietinum: XP_004493546.1, XP_012570484.1
- Cucumis melo: MELO3C009653P2
- Cucumis sativus: Cucsa.242940.1
- Lotus japonicus: Lj1g3v4290130.2
- Medicago truncatula: Medtr7g092510.1, Medtr1g059270.1
- Ziziphus jujuba: XP_015899023.1
Sequences
cDNA Sequence
- >Glyma.19G143900.1
AGAATCACAGAACCGGAGAGAAAGAGAAAGAAAAAGAAAGAGAGAGAGAATTTCATTGACCGCCATTGAAGCTTTGCTTCTTCTATCTCTCACTCCACTCGTAACGAAATTCCCCACACACATTCTTCATTTCCTCATTTTCTCCAATTTCAACACTGTCACGGTTCAGAATTCGTCCAAGTAAAGACAAAATTCGAGGTGTGTACGGTTCAATTGGACCTTCTACGCTGCGTTTTGTTCGCTCAATGGACCAAGCTCCGGGAGGATTGCGCGGATCCGTTCACCACGGCGCCACGCTCGAGTCAATTCAATTCAACGAAGAAATTCAGGGACTCATGGCGCCGGCGCCGGAAAACGCGAGCTCGTTCACCGCGCTGCTTGAACTCCCGCCGACGCAGGCGGTGGAGCTCCTTCACTCGCCGGAATCTGACAGCGCTCGGAAACCGCCTAATTGCCATGTCAGCGCGAACCAGAAACCCTACCTGCTCAATTCTTTCGGCAGCAATTTGACCTTCCCTTCCAACGCCGCCTTAATCGAACGCGCCGCGAAGTTCTCCGTGTTCGCCGGCGAGAACTCGCCGCCTCCGCCGGGGGAGGCGCGCCTGATTCCAGCAGGAACCGGTTCGACTTTGGACAGAGTGAAGAACGAGCCGCAAGAGACCGATTCGAACCCGTGCTCGAGCTCGAGGCTGGGTTGCATTTCGGATCCCGCGGTTGAAAACAACATTCAGAGGACCGCCAAGAGAAAGGAGCGAGAGAAGAAGGCTAAAGGATCGTCGAAGAAGCGTAAGAGCGCCGCCGATGAGACATCCGGTGACGGCGAGAAGCTTCCCTACGTCCATGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTGCAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATGGATTTCAGCCTCGACAGTTTATTGGCTACTGATGGGGCATCTCTAGTGGATAGTAACTTACCTAGCATGGTGACACCTCTCATGTGGCCAGAAATCCCACTCAATGGCAACCGGCAGCATTATCAACAGCAGTGGCAATTGGATGCATTCCACCAACCGCTATGGGAGAGGGAAGAAGTCAACCATAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCATCGGCAAACTCAGCGTCTCTGCACTTAAATCAATTGAAGATGGAGCTCTGAAAGCGTACAGAAGTCGTACCAGTAGCTATTAGCCTAGTAGTGTATATATCAAATATAGTATTCGCAGTTAGCAGTGATTTGAGCGGTCTCAACATTTAGCAGGGTTTCTATGTCTTCTATTTGTCAGAGACGGTTGGAAACCTGGATTTTCTTTGGCCAGAAAGTAAGATGAATTGGCATGCTATTCTTATAGTATGATATTATTATTACTATGTATACTAACTATAGGGGTTATTCAATCCATGAGGTGATTGATTCAAGATTGTAAAATCATAGAACGGACTGTTACTACTGAACTATCATGGGAGTGGGTTGCTTTGTTCATTAAATACTACTTAGATGATTGGCTCTTTATGAGGATTTTCCTAAAAAAAGATATTTTAATTCTGAATTACTTGCAG
CDS Sequence
- >Glyma.19G143900.1
ATGGACCAAGCTCCGGGAGGATTGCGCGGATCCGTTCACCACGGCGCCACGCTCGAGTCAATTCAATTCAACGAAGAAATTCAGGGACTCATGGCGCCGGCGCCGGAAAACGCGAGCTCGTTCACCGCGCTGCTTGAACTCCCGCCGACGCAGGCGGTGGAGCTCCTTCACTCGCCGGAATCTGACAGCGCTCGGAAACCGCCTAATTGCCATGTCAGCGCGAACCAGAAACCCTACCTGCTCAATTCTTTCGGCAGCAATTTGACCTTCCCTTCCAACGCCGCCTTAATCGAACGCGCCGCGAAGTTCTCCGTGTTCGCCGGCGAGAACTCGCCGCCTCCGCCGGGGGAGGCGCGCCTGATTCCAGCAGGAACCGGTTCGACTTTGGACAGAGTGAAGAACGAGCCGCAAGAGACCGATTCGAACCCGTGCTCGAGCTCGAGGCTGGGTTGCATTTCGGATCCCGCGGTTGAAAACAACATTCAGAGGACCGCCAAGAGAAAGGAGCGAGAGAAGAAGGCTAAAGGATCGTCGAAGAAGCGTAAGAGCGCCGCCGATGAGACATCCGGTGACGGCGAGAAGCTTCCCTACGTCCATGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTGCAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATGGATTTCAGCCTCGACAGTTTATTGGCTACTGATGGGGCATCTCTAGTGGATAGTAACTTACCTAGCATGGTGACACCTCTCATGTGGCCAGAAATCCCACTCAATGGCAACCGGCAGCATTATCAACAGCAGTGGCAATTGGATGCATTCCACCAACCGCTATGGGAGAGGGAAGAAGTCAACCATAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCATCGGCAAACTCAGCGTCTCTGCACTTAAATCAATTGAAGATGGAGCTCTGA
Protein Sequence
- >Glyma.19G143900.1
MDQAPGGLRGSVHHGATLESIQFNEEIQGLMAPAPENASSFTALLELPPTQAVELLHSPESDSARKPPNCHVSANQKPYLLNSFGSNLTFPSNAALIERAAKFSVFAGENSPPPPGEARLIPAGTGSTLDRVKNEPQETDSNPCSSSRLGCISDPAVENNIQRTAKRKEREKKAKGSSKKRKSAADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRMDFSLDSLLATDGASLVDSNLPSMVTPLMWPEIPLNGNRQHYQQQWQLDAFHQPLWEREEVNHNFMTPENSLLSYDSSANSASLHLNQLKMEL*