Information report for GmCHLI1
Gene Details
|
|
Functional Descriptions
- GmCHLI1, a gene encoding the I subunit of magnesium (Mg)-chelatase, which functions in hexamers as responsible for the semi-dominant etiolation phenotype in soybean.
- We performed map-based cloning and found that a CHLI homolog in soybean, GmCHLI1, is responsible for the etiolation phenotype.
- These results indicate that the GmCHLI1 and GmCHLI2 missense mutations not only affect interaction capacity but also influence the transcript abundance of Mg-chelatase subunits and subsequently block chlorophyll biosynthesis.
- These results indicate that all four GmCHLIs can function as the CHLI subunit but that their functions could be dominant negatively affected by non-synonymous mutation of either copy of GmCHLI1 and GmCHLI2, further suggesting that the different copies might interacted in nature.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: 100784256
- UniProt accessions: P93162
- EMBL: D45857
- AlphaFoldDB: P93162
- EnsemblPlants: KRH21317
- Gramene: KRH21317
- GO: GO:0005524 , GO:0009570 , GO:0015979 , GO:0015995 , GO:0016851 , GO:0016887
- OMA: VCFRPGN
- InterPro: IPR000523 , IPR003593 , IPR011775 , IPR027417 , IPR041628 , IPR045006
- PANTHER: PTHR32039 , PTHR32039:SF9
- SUPFAM: SSF52540
- Gene3D: 1.10.8.80 , 3.40.50.300
- OrthoDB: P93162
- SMR: P93162
- CDD: cd00009
Sequences
cDNA Sequence
- >Glyma.13G232500.1
ACAGAGAGAGAAGAATGAAATCTATCTATCTTCTTATCCGAAGTCTGGGAGGCCAATAGGAAGCACGCCAGCTGCTACGAATGGTGAATAAAAGACAAAAGAAACAAACTGCTACATAGCATACAGTCTGTCTTCTCTTCTCTTCTCCGGTTATGGCGTCCGCCTTGGGCACTTCTTCAATTGCGGTTCTGCCTTCGCGCTACTTCTCTTCTTCTTCTTCCAAGCCTTCCATTCACACTCTCTCTCTAACTTCAGGGCAGAACTATGGGCGGAAGTTTTATGGAGGAATTGGAATCCATGGCATAAAGGGAAGGGCTCAGCTCTCGGTTACCAATGTTGCCACTGAAGTTAACTCTGTAGAACAGGCTCAGAGTATTGCTTCTAAAGAAAGCCAGAGGCCAGTATACCCATTTTCTGCCATAGTTGGACAAGATGAGATGAAGCTTTGTCTTCTCCTTAATGTGATTGATCCTAAGATTGGAGGTGTAATGATCATGGGGGATAGGGGCACAGGGAAATCTACAACGGTCAGGTCATTGGTTGATTTACTTCCCGAAATCAAGGTTGTTGCTGGTGACCCTTATAACTCAGACCCACAAGATCCAGAATTCATGGGTGTTGAAGTCAGAGAGCGTGTACTTCAAGGAGAGGAACTTTCTGTTGTCTTGACCAAAATTAACATGGTTGATTTGCCATTGGGAGCTACAGAAGATAGAGTGTGTGGAACGATTGACATTGAGAAAGCCCTGACTGAGGGTGTCAAGGCATTTGAGCCTGGACTACTGGCTAAAGCTAATAGGGGAATCTTATATGTTGATGAAGTTAATCTTTTGGATGATCACTTGGTGGATGTGTTGTTGGATTCTGCTGCATCAGGATGGAACACAGTAGAGAGAGAGGGAATTTCTATCTCGCATCCTGCACGGTTTATCCTAATTGGCTCAGGCAACCCCGAAGAAGGGGAGCTCCGGCCGCAGCTGCTAGATAGGTTTGGAATGCATGCTCAAGTTGGAACTGTTAGGGATGCTGAGCTCAGAGTGAAGATTGTGGAGGAGAGAGGTCGATTTGACAAAAATCCAAAGGAATTTCGAGATTCTTACAAAGCTGAGCAAGAGAAGCTCCAACAACAAATTACCTCAGCAAGGAGTGTTCTTTCTTCTGTTCAAATTGATCAAGATCTCAAGGTGAAAATCTCCAAGGTGTGTGCTGAGTTGAATGTGGATGGATTAAGAGGAGACATAGTAACAAATAGAGCTGCAAAAGCTCTGGCTGCTCTGAAGGGAAGAGACAACGTAAGTGCCGAGGATATTGCTACTGTCATCCCTAACTGCTTGAGACACCGTCTTAGAAAGGATCCCTTGGAGTCTATAGACTCAGGTTTACTTGTCACTGAGAAATTTTATGAGGTATTCAGCTGAGGATCATAGATGTAACACGGTTTGTATTCTGTGGTATTCCATGAGTATAATGCTACTTCATTATTTACATTTTACCTTTTCTGTGGAGATTTTCATTGTCGTTAAACATCAATAAGATTCATGAGTTCCTTCTACACAGGAAATT
CDS Sequence
- >Glyma.13G232500.1
ATGGCGTCCGCCTTGGGCACTTCTTCAATTGCGGTTCTGCCTTCGCGCTACTTCTCTTCTTCTTCTTCCAAGCCTTCCATTCACACTCTCTCTCTAACTTCAGGGCAGAACTATGGGCGGAAGTTTTATGGAGGAATTGGAATCCATGGCATAAAGGGAAGGGCTCAGCTCTCGGTTACCAATGTTGCCACTGAAGTTAACTCTGTAGAACAGGCTCAGAGTATTGCTTCTAAAGAAAGCCAGAGGCCAGTATACCCATTTTCTGCCATAGTTGGACAAGATGAGATGAAGCTTTGTCTTCTCCTTAATGTGATTGATCCTAAGATTGGAGGTGTAATGATCATGGGGGATAGGGGCACAGGGAAATCTACAACGGTCAGGTCATTGGTTGATTTACTTCCCGAAATCAAGGTTGTTGCTGGTGACCCTTATAACTCAGACCCACAAGATCCAGAATTCATGGGTGTTGAAGTCAGAGAGCGTGTACTTCAAGGAGAGGAACTTTCTGTTGTCTTGACCAAAATTAACATGGTTGATTTGCCATTGGGAGCTACAGAAGATAGAGTGTGTGGAACGATTGACATTGAGAAAGCCCTGACTGAGGGTGTCAAGGCATTTGAGCCTGGACTACTGGCTAAAGCTAATAGGGGAATCTTATATGTTGATGAAGTTAATCTTTTGGATGATCACTTGGTGGATGTGTTGTTGGATTCTGCTGCATCAGGATGGAACACAGTAGAGAGAGAGGGAATTTCTATCTCGCATCCTGCACGGTTTATCCTAATTGGCTCAGGCAACCCCGAAGAAGGGGAGCTCCGGCCGCAGCTGCTAGATAGGTTTGGAATGCATGCTCAAGTTGGAACTGTTAGGGATGCTGAGCTCAGAGTGAAGATTGTGGAGGAGAGAGGTCGATTTGACAAAAATCCAAAGGAATTTCGAGATTCTTACAAAGCTGAGCAAGAGAAGCTCCAACAACAAATTACCTCAGCAAGGAGTGTTCTTTCTTCTGTTCAAATTGATCAAGATCTCAAGGTGAAAATCTCCAAGGTGTGTGCTGAGTTGAATGTGGATGGATTAAGAGGAGACATAGTAACAAATAGAGCTGCAAAAGCTCTGGCTGCTCTGAAGGGAAGAGACAACGTAAGTGCCGAGGATATTGCTACTGTCATCCCTAACTGCTTGAGACACCGTCTTAGAAAGGATCCCTTGGAGTCTATAGACTCAGGTTTACTTGTCACTGAGAAATTTTATGAGGTATTCAGCTGA
Protein Sequence
- >Glyma.13G232500.1
MASALGTSSIAVLPSRYFSSSSSKPSIHTLSLTSGQNYGRKFYGGIGIHGIKGRAQLSVTNVATEVNSVEQAQSIASKESQRPVYPFSAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVAGDPYNSDPQDPEFMGVEVRERVLQGEELSVVLTKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERGRFDKNPKEFRDSYKAEQEKLQQQITSARSVLSSVQIDQDLKVKISKVCAELNVDGLRGDIVTNRAAKALAALKGRDNVSAEDIATVIPNCLRHRLRKDPLESIDSGLLVTEKFYEVFS*