Information report for SH6.1
Gene Details
|
|
Functional Descriptions
- Two QTLs of hypocotyl elongation under low light, SH3.1 and SH6.1;FEL, were fine-mapped using introgression lines (donor parent, XIS49; recurrent parent, CL).
- SH6.1;FEL encodes a CCCH-type zinc finger protein FRIGIDA-ESSENTIAL LIKE (SH6.1;FEL, CsaV3_6G050300). SH6.1;FEL negatively regulated hypocotyl elongation but it was transcriptionally suppressed by long terminal repeats retrotransposon insertion in CL cucumber.
- SH6.1;FEL physically binds to the promoter of CONSTITUTIVE PHOTOMORPHOGENIC 1a (COP1a), regulating the expression of COP1a and the downstream hypocotyl elongation.
- The proteins encoded by two genes PhyB and FRIGIDA-ESSENTIAL LIKE (SH6.1;FEL) were determined to control hypocotyl elongation in XIS cucumber, and both genes are affected by SVs.
Literature and News
Gene Resources
- NCBI ID: 101203293
- UniProt accessions: A0A0A0KHP2
Homologs
- Citrullus lanatus: Cla009634
- Cucumis melo: MELO3C007268P1
- Gossypium arboreum: Cotton_A_11329_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A05G1353, Gh_D06G2167
- Manihot esculenta: Manes.16G030100.1.p
- Prunus mume: XP_008225130.2, XP_016648794.1
- Prunus persica: Prupe.4G051000.6.p, Prupe.4G051000.2.p, Prupe.4G051000.1.p, Prupe.4G051000.9.p, Prupe.4G051000.8.p, Prupe.4G051000.12.p, Prupe.4G051000.10.p, Prupe.4G051000.3.p
Sequences
cDNA Sequence
- >Csa_6G518020
ATGGACACCAAGAGGCATGACAAGCACTTGAGATCGGAAACCGTTACTGCCACTGAAAATTCTGAAGTGAATAAATTGTCCTTTGTAGGAGAAACTGAAAATAGTGGCAATATTGAATTTTCCAGTCCGTCAGGTAAGCCATTGGAAAAAAAGGAGGAACAATCACATGGAGAGAGCACAAAATTCGAATCACAGAAGTGCCTGAAGGATAAGGGGACAGAAGATCAAGAACCTACTGTTGGTGATAAGGATGTAGAGGCTTTGAGAAATAAAGATTTTGGTGGCTCAAGTTATAACAAGGTTCCATTGTGCAATAGTGAAGTTATGGTTGCTACAGCTACCAATGGATCAAGTGACACCTTAGAGGATTCTGACATTGGATCAAAAAATCACTCGGCTGGACGGATTATTGGTACCAAGAATCCTGAGAGAGAAAGTGAGCAAATGGGCATGCAACTAGATAATGGAGAAAATCAAATGGCATCAAGATCAACTGCTTCAAAAAAGAGGTCAAGAAGTTTGACCCCCGTTGCTGATGTTAATGGTGAAGAAAAACATCCTGCTGCAGCTATCTGTGACTTCTATGCTAAAGGATGGTGCATAAAAGGTAGCTCTTGCAGCTTTTTGCATATAAAAAATAATGCATACGGTAGTGACCAGCATTCTGAGGAACGTGCTGGTGCTGCATGTTTGAAAAAACAAGCTCAGCTCAATGAAGTACTTTCAAATGGCACAGGTTTGCAATACAATGCAGATGTGTTGAAATCACCAAGGGAGGATTCACTTTTGAGTGCACTTCCCGACTGCCAGAAATTGCCTTCTACTAGTTTTGGTGCATCATTTCCCCTTAGTAGAGGGCTTTCTGCATCAAGGCTTGAGTTGCCTCCTGAGTTTGGAGTCTCTTCAGATGGCTTCACCCCATTGGGTGTCATGGAGGAACCCACTAATGTTGCATGCCCACGTTTGCTGAACGATCACCTTTCTCCAGTTCTGAGAACTTCTCTGAATTCAAATCCTACTCTTCCAAGGGATGCTATTTTATCTTCTCGTTTCACTACCTCTAATGCTTCTTTGTTTCCTCTTACGTCTTCCTCAAGTGCAAGCCTCCTCAATGCTCATAAGATGTCCATTATTGACAGAGAACATCATGTTTCTACACCGGCCTCCTCGTTGATGAGAAGTTCCCCCTTTTCTGCTTCTGGATCAGATAATTCATTCACTCACGTGTCAAAGAATCCTTCAGAATACAAAATGAAATGTTCGTCGGACGATTGGGAACCGTCTGTACCTTTTAGACCATCATTTTTCATTCCTTCAATAACTACGGCGAGCCAATACGACCCTTTCTTGGATAGCATGGAGGTACCGAGAATAGTGGGTTGTTCTTATAATGTTACTCTTGATCGTCAAGGACACGAAGAAGCATCACCTCTTAGTACTTTACAGAGGGCATCGGGTAATTTTGTGGTTCCTGGGAGCTCAAAGCCAGAATTTAATGATGATACAAGTTCTTTATCCTCCCACAATAAAGCTGCAGATAAGAATGGAAAGGTTGGCCATCTGCAAGGCAAAGATCCACTTTTGTTAGAACCAGAAATACGTGGATCTTTTGGTCTTGATGGCCGCTTTTCTAGGACTAGAGAGGATGATCACAAGGGTCTCACTTGTGAAAAAGATGTTACCAAAAAGAAGAAAATGGGTATCGGTGGTGAACTAAAGCTTCCAAATATTTCATTACATGAAAAGGACTCTGAAGCAGATAGTGATAGGCAACTTGGTGATATGGATGGTAAGCATCTCATGGAGGGAAATGCTCCCAAAGAATCAAAAGCAACTAGGCACTTCCGTTCTGCTCTCATAGAATTGGTGAAAGAAATATTGAAACCTAAGTGGCGTGAGGGTCATCTCAAAAAGGATGTGCATAACACAGTTGTTAAGAAAACATTTGATAAGGTTCTTGGTGCTCTACAATCTCACCAAGTTCCAACTACTGTGGAATCAGTTAAGCAGTATCTTTCTTCATCTCGTCCAAAGATCGAGAAGCTAGTCGAGGGATATGTTAGTAAATATGGAAAATCTTGA
CDS Sequence
- >Csa_6G518020
ATGGACACCAAGAGGCATGACAAGCACTTGAGATCGGAAACCGTTACTGCCACTGAAAATTCTGAAGTGAATAAATTGTCCTTTGTAGGAGAAACTGAAAATAGTGGCAATATTGAATTTTCCAGTCCGTCAGGTAAGCCATTGGAAAAAAAGGAGGAACAATCACATGGAGAGAGCACAAAATTCGAATCACAGAAGTGCCTGAAGGATAAGGGGACAGAAGATCAAGAACCTACTGTTGGTGATAAGGATGTAGAGGCTTTGAGAAATAAAGATTTTGGTGGCTCAAGTTATAACAAGGTTCCATTGTGCAATAGTGAAGTTATGGTTGCTACAGCTACCAATGGATCAAGTGACACCTTAGAGGATTCTGACATTGGATCAAAAAATCACTCGGCTGGACGGATTATTGGTACCAAGAATCCTGAGAGAGAAAGTGAGCAAATGGGCATGCAACTAGATAATGGAGAAAATCAAATGGCATCAAGATCAACTGCTTCAAAAAAGAGGTCAAGAAGTTTGACCCCCGTTGCTGATGTTAATGGTGAAGAAAAACATCCTGCTGCAGCTATCTGTGACTTCTATGCTAAAGGATGGTGCATAAAAGGTAGCTCTTGCAGCTTTTTGCATATAAAAAATAATGCATACGGTAGTGACCAGCATTCTGAGGAACGTGCTGGTGCTGCATGTTTGAAAAAACAAGCTCAGCTCAATGAAGTACTTTCAAATGGCACAGGTTTGCAATACAATGCAGATGTGTTGAAATCACCAAGGGAGGATTCACTTTTGAGTGCACTTCCCGACTGCCAGAAATTGCCTTCTACTAGTTTTGGTGCATCATTTCCCCTTAGTAGAGGGCTTTCTGCATCAAGGCTTGAGTTGCCTCCTGAGTTTGGAGTCTCTTCAGATGGCTTCACCCCATTGGGTGTCATGGAGGAACCCACTAATGTTGCATGCCCACGTTTGCTGAACGATCACCTTTCTCCAGTTCTGAGAACTTCTCTGAATTCAAATCCTACTCTTCCAAGGGATGCTATTTTATCTTCTCGTTTCACTACCTCTAATGCTTCTTTGTTTCCTCTTACGTCTTCCTCAAGTGCAAGCCTCCTCAATGCTCATAAGATGTCCATTATTGACAGAGAACATCATGTTTCTACACCGGCCTCCTCGTTGATGAGAAGTTCCCCCTTTTCTGCTTCTGGATCAGATAATTCATTCACTCACGTGTCAAAGAATCCTTCAGAATACAAAATGAAATGTTCGTCGGACGATTGGGAACCGTCTGTACCTTTTAGACCATCATTTTTCATTCCTTCAATAACTACGGCGAGCCAATACGACCCTTTCTTGGATAGCATGGAGGTACCGAGAATAGTGGGTTGTTCTTATAATGTTACTCTTGATCGTCAAGGACACGAAGAAGCATCACCTCTTAGTACTTTACAGAGGGCATCGGGTAATTTTGTGGTTCCTGGGAGCTCAAAGCCAGAATTTAATGATGATACAAGTTCTTTATCCTCCCACAATAAAGCTGCAGATAAGAATGGAAAGGTTGGCCATCTGCAAGGCAAAGATCCACTTTTGTTAGAACCAGAAATACGTGGATCTTTTGGTCTTGATGGCCGCTTTTCTAGGACTAGAGAGGATGATCACAAGGGTCTCACTTGTGAAAAAGATGTTACCAAAAAGAAGAAAATGGGTATCGGTGGTGAACTAAAGCTTCCAAATATTTCATTACATGAAAAGGACTCTGAAGCAGATAGTGATAGGCAACTTGGTGATATGGATGGTAAGCATCTCATGGAGGGAAATGCTCCCAAAGAATCAAAAGCAACTAGGCACTTCCGTTCTGCTCTCATAGAATTGGTGAAAGAAATATTGAAACCTAAGTGGCGTGAGGGTCATCTCAAAAAGGATGTGCATAACACAGTTGTTAAGAAAACATTTGATAAGGTTCTTGGTGCTCTACAATCTCACCAAGTTCCAACTACTGTGGAATCAGTTAAGCAGTATCTTTCTTCATCTCGTCCAAAGATCGAGAAGCTAGTCGAGGGATATGTTAGTAAATATGGAAAATCTTGA
Protein Sequence
- >Csa_6G518020
MDTKRHDKHLRSETVTATENSEVNKLSFVGETENSGNIEFSSPSGKPLEKKEEQSHGESTKFESQKCLKDKGTEDQEPTVGDKDVEALRNKDFGGSSYNKVPLCNSEVMVATATNGSSDTLEDSDIGSKNHSAGRIIGTKNPERESEQMGMQLDNGENQMASRSTASKKRSRSLTPVADVNGEEKHPAAAICDFYAKGWCIKGSSCSFLHIKNNAYGSDQHSEERAGAACLKKQAQLNEVLSNGTGLQYNADVLKSPREDSLLSALPDCQKLPSTSFGASFPLSRGLSASRLELPPEFGVSSDGFTPLGVMEEPTNVACPRLLNDHLSPVLRTSLNSNPTLPRDAILSSRFTTSNASLFPLTSSSSASLLNAHKMSIIDREHHVSTPASSLMRSSPFSASGSDNSFTHVSKNPSEYKMKCSSDDWEPSVPFRPSFFIPSITTASQYDPFLDSMEVPRIVGCSYNVTLDRQGHEEASPLSTLQRASGNFVVPGSSKPEFNDDTSSLSSHNKAADKNGKVGHLQGKDPLLLEPEIRGSFGLDGRFSRTREDDHKGLTCEKDVTKKKKMGIGGELKLPNISLHEKDSEADSDRQLGDMDGKHLMEGNAPKESKATRHFRSALIELVKEILKPKWREGHLKKDVHNTVVKKTFDKVLGALQSHQVPTTVESVKQYLSSSRPKIEKLVEGYVSKYGKS