Information report for SH3.1
Gene Details
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Functional Descriptions
- Two QTLs of hypocotyl elongation under low light, SH3.1;PhyB and SH6.1, were fine-mapped using introgression lines (donor parent, XIS49; recurrent parent, CL).
- SH3.1;PhyB encodes a red-light receptor Phytochrome B (SH3.1;PhyB, CsaV3_3G015190). A~4kb region with large deletion and highly divergent regions (HDRs) were identified in the promoter of the SH3.1;PhyB gene in XIS49.
- Loss of function of this SH3.1;PhyB caused a super-long hypocotyl phenotype.
- The proteins encoded by two genes SH3.1;PhyB and FRIGIDA-ESSENTIAL LIKE (FEL) were determined to control hypocotyl elongation in XIS cucumber, and both genes are affected by SVs.
Literature and News
Gene Resources
- NCBI ID: 101212197
- UniProt accessions: A0A0A0L825
Sequences
cDNA Sequence
- >Csa_3G166340
AAGGAACAACGGGCTGAGGTTTTCACCATATTACAGCAGCTGGGATTTTTACGTACTACTGAAATCTCTCTACTCAACAAAGGCTTTTTGTTGTTGATGGTGATGAGAATTTTGTTCTTCTTTAATTACTTTTTCTTCTCAATTCTTGATTTTTGATTTTTGATTTTTGATGCTTTGTTCTTCGTCGGAGAATCCTGATTTCTTAGCTCCGGGGCGACGGGGGTACTGAAATGAGAATCCATGGTGGGGATTTGAACAATTTCTGCAAGTAAGTGGAAACAAAATTGGAATCAAGAAAATGGTTTCCAGTAATCGAGCAACTCATTCGCATCAACAACAAGCGCAGTCTTCGAACACGAATACCAGCAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCTATAGCGCAGTACACAGTTGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGAAAATCTTTTGACTACTCACAATCTATAAAAACTTCGACTCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGGGGTGGTCATATCCAGCCCTTTGGATGTATGATAGCTATTGAAGAGGCTAGTTTTCGAGTTATTGCGTACAGTGAAAACGCTAGGGAATTGCTCGGTCTGACGCCTCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTTACAATTGGGACTGATGTACGCAACTTGTTCACTTCCAATAGTGCAATTCTACTAGAGAAGGCGTTTGGGGCTCGAGAAATCACTTTGTTGAACCCAGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTCTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCTCTTTCTATTGCTGGAGCAGTACAATCGCAGAAGCTTGCGGTACGTGCAATTTCTCAGTTACAAGCACTCCCTGGCGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGGTATGATAGAGTTATGGTGTACAAGTTTCATGAGGATGAGCATGGTGAGGTTGTAGCTGAAAGTAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGCGTTAGGATGATTGTTGATTGCCATGCCTCTCCAGTTCGTGTAATTCAGGATGCAGGGCTTATGCAACATCTCTGCTTGGTGGGTTCAACTCTTCGTGCACCCCATGGTTGCCATGCCCAGTATATGGCCAATATGGGCTCTATTGCTTCGTTAGCAATGGCAGTTGTTATCAACGGTAATGATGATGAAGCTATTGGTGGACGAAACTCAACAAGGCTTTGGGGTTTGGTTGTATGTCATCATACTTCTGCTCGGTGCATTCCGTTCCCACTCCGGTATGCGTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCCTCACAGTTGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTACTCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCTCTGGGTGTGACGCCAACTGAGGCCCAAATAAAGGATATTGTGGAGTGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGGGCAGCCTTGCTGGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACCAAAAAGGATTTTCTATTTTGGTTCCGATCTCATACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCGGAGGATAAGGATGATGGTCAAAGAATGCATCCGCGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAACGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTACGTGATTCATTTAAGAACGATGTGGCAATCAATTCAAAGGCAGTTGTGCACCCTCATCTAGGGGATCTTGACTTGCAGGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGCTGATGGTCGTATCAATGGATGGAATGCTAAGATAGCTGAGTTGACTGGGCTTGCGGTTGAGGAGGCTATGGGGAAATCCTTGGTTCGTGATCTTGTGTACAAAGAGTCTGAAGAAACAGTTGACAGACTTGTTTCCCGTGCTTTAAAAGGTGAAGAAGATAAAAATATAGAGATAAAAATGAGGACATTTGGGCCAGAAGAAGATCAAAGGACGCCATTTTTTGTTGTCGTAAATGCTTGCTCTAGCAGGGACTACACTGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTGTAAGCATACAAGGTGATTATAAAGCAATTATTCATAGCCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCGGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGAGAGGACATAATTGGAAAAATGCTAGTAGGAGAGGTTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCCTGCACAGTGCAATTGGAGGGCAGGATAATGAAAAATACCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCTTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCAAGTCCAGAATTGCAACAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTCCTTGAGACCAGTGTTGCTTGTGAAAAACAAATGCTAAAGATTATTGAGGATATGGACTTGGAGTGTATTGATGATGGCACAATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGATACTACTCAGAGAAAGAAGCTTACAACTGATTCGTGATATACCAGAAGAAGTAAAGACCATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCCGATTTCTTGTTGAATATGGTCCGTTACGCACCCTCTCCGGAAGGCTGGGTAGAAATACGTGTCTGTCCATTACTGAAGCAAAACTCAGATGGAATTACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTAGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTACAATACATCAGGGAATCTGAAAGATGCTATTTCTTGATTACTCTCGAACTCCCCTTGACAGAGAGAGGCCTAAACGATGTCGGTTAGTTTTTTCGATCACTTGCAGACTTTTCCTCATTAACATAAGATACCTGTGTAATTTCCCAGCCATTGTTTATAAGCCAAGCTCTGAGCTTACATGTCGTTGAGGCCGTGTGATATAATTAGTAGGTGAATAAAGACTGTTTAGTACATCACTTCCACTGATCTACTTATTCTAGATGCTAATGTATGAGGTACTACAGAATTATCTTCTTCTCTTTTCTTCAAGTTTGGGGGGTGGGGGCAATAATAACAATGTTGGTGTTAGAGATTCCTCTATTGGAGGAATTTTAGGTCCTTGTTAATTTGAGTTGCATCTTCAATCTGGTGTATGTACTTAGAGATGTATACTATTCTTACCATTTCTTCCTCATAATTTATGTAATGTTAAAAACTATTAGCTGCTGGCTTAGAGAAAGGGGAGAAGAAAATTTTTTTGTGGCATGGATGAATATTTGAGATTTATAGTCAATGCAGTGAAC
CDS Sequence
- >Csa_3G166340
ATGGTTTCCAGTAATCGAGCAACTCATTCGCATCAACAACAAGCGCAGTCTTCGAACACGAATACCAGCAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCTATAGCGCAGTACACAGTTGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGAAAATCTTTTGACTACTCACAATCTATAAAAACTTCGACTCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGGGGTGGTCATATCCAGCCCTTTGGATGTATGATAGCTATTGAAGAGGCTAGTTTTCGAGTTATTGCGTACAGTGAAAACGCTAGGGAATTGCTCGGTCTGACGCCTCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTTACAATTGGGACTGATGTACGCAACTTGTTCACTTCCAATAGTGCAATTCTACTAGAGAAGGCGTTTGGGGCTCGAGAAATCACTTTGTTGAACCCAGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTCTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCTCTTTCTATTGCTGGAGCAGTACAATCGCAGAAGCTTGCGGTACGTGCAATTTCTCAGTTACAAGCACTCCCTGGCGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGGTATGATAGAGTTATGGTGTACAAGTTTCATGAGGATGAGCATGGTGAGGTTGTAGCTGAAAGTAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGCGTTAGGATGATTGTTGATTGCCATGCCTCTCCAGTTCGTGTAATTCAGGATGCAGGGCTTATGCAACATCTCTGCTTGGTGGGTTCAACTCTTCGTGCACCCCATGGTTGCCATGCCCAGTATATGGCCAATATGGGCTCTATTGCTTCGTTAGCAATGGCAGTTGTTATCAACGGTAATGATGATGAAGCTATTGGTGGACGAAACTCAACAAGGCTTTGGGGTTTGGTTGTATGTCATCATACTTCTGCTCGGTGCATTCCGTTCCCACTCCGGTATGCGTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCCTCACAGTTGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTACTCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCTCTGGGTGTGACGCCAACTGAGGCCCAAATAAAGGATATTGTGGAGTGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGGGCAGCCTTGCTGGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACCAAAAAGGATTTTCTATTTTGGTTCCGATCTCATACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCGGAGGATAAGGATGATGGTCAAAGAATGCATCCGCGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAACGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTACGTGATTCATTTAAGAACGATGTGGCAATCAATTCAAAGGCAGTTGTGCACCCTCATCTAGGGGATCTTGACTTGCAGGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGCTGATGGTCGTATCAATGGATGGAATGCTAAGATAGCTGAGTTGACTGGGCTTGCGGTTGAGGAGGCTATGGGGAAATCCTTGGTTCGTGATCTTGTGTACAAAGAGTCTGAAGAAACAGTTGACAGACTTGTTTCCCGTGCTTTAAAAGGTGAAGAAGATAAAAATATAGAGATAAAAATGAGGACATTTGGGCCAGAAGAAGATCAAAGGACGCCATTTTTTGTTGTCGTAAATGCTTGCTCTAGCAGGGACTACACTGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTGTAAGCATACAAGGTGATTATAAAGCAATTATTCATAGCCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCGGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGAGAGGACATAATTGGAAAAATGCTAGTAGGAGAGGTTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCCTGCACAGTGCAATTGGAGGGCAGGATAATGAAAAATACCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCTTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCAAGTCCAGAATTGCAACAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTCCTTGAGACCAGTGTTGCTTGTGAAAAACAAATGCTAAAGATTATTGAGGATATGGACTTGGAGTGTATTGATGATGGCACAATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGATACTACTCAGAGAAAGAAGCTTACAACTGATTCGTGATATACCAGAAGAAGTAAAGACCATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCCGATTTCTTGTTGAATATGGTCCGTTACGCACCCTCTCCGGAAGGCTGGGTAGAAATACGTGTCTGTCCATTACTGAAGCAAAACTCAGATGGAATTACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTAGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTACAATACATCAGGGAATCTGAAAGATGCTATTTCTTGATTACTCTCGAACTCCCCTTGACAGAGAGAGGCCTAAACGATGTCGGTTAG
Protein Sequence
- >Csa_3G166340
MVSSNRATHSHQQQAQSSNTNTSNLRSHRTDSISKAIAQYTVDARLHAVFEQSGESGKSFDYSQSIKTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIEEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKNDVAINSKAVVHPHLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEETVDRLVSRALKGEEDKNIEIKMRTFGPEEDQRTPFFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFVSIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERSLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPLLKQNSDGITLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDVG