Information report for SH3.1
Gene Details
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Functional Descriptions
- Two QTLs of hypocotyl elongation under low light, SH3.1;PhyB and SH6.1, were fine-mapped using introgression lines (donor parent, XIS49; recurrent parent, CL).
- SH3.1;PhyB encodes a red-light receptor Phytochrome B (SH3.1;PhyB, CsaV3_3G015190). A~4kb region with large deletion and highly divergent regions (HDRs) were identified in the promoter of the SH3.1;PhyB gene in XIS49.
- Loss of function of this SH3.1;PhyB caused a super-long hypocotyl phenotype.
- The proteins encoded by two genes SH3.1;PhyB and FRIGIDA-ESSENTIAL LIKE (FEL) were determined to control hypocotyl elongation in XIS cucumber, and both genes are affected by SVs.
Literature and News
Gene Resources
- NCBI ID: 101212197
- UniProt accessions: A0A0A0L825
Homologs
- Actinidia chinensis: CEY00_Acc22895
- Citrullus lanatus: Cla97C05G088180
- Cucumis melo: MELO3C006717
- Gossypium hirsutum: Gohir.A10G172500, Gohir.D10G179000
- Juglans regia: Jr07_11560
- Manihot esculenta: MANES_03G205100
- Nicotiana attenuata: A4A49_26492
- Populus trichocarpa: POPTR_008G105200v3
- Prunus persica: PRUPE_1G117000
- Sesamum indicum: SIN_1016170
- Solanum lycopersicum: Solyc01g059870.3
- Solanum tuberosum: PGSC0003DMG400024017
- Vitis vinifera: VIT_05s0077g00940
Sequences
cDNA Sequence
- >Csa_3G166340
AAGGAACAACGGGCTGAGGTTTTCACCATATTACAGCAGCTGGGATTTTTACGTACTACTGAAATCTCTCTACTCAACAAAGGCTTTTTGTTGTTGATGGTGATGAGAATTTTGTTCTTCTTTAATTACTTTTTCTTCTCAATTCTTGATTTTTGATTTTTGATTTTTGATGCTTTGTTCTTCGTCGGAGAATCCTGATTTCTTAGCTCCGGGGCGACGGGGGTACTGAAATGAGAATCCATGGTGGGGATTTGAACAATTTCTGCAAGTAAGTGGAAACAAAATTGGAATCAAGAAAATGGTTTCCAGTAATCGAGCAACTCATTCGCATCAACAACAAGCGCAGTCTTCGAACACGAATACCAGCAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCTATAGCGCAGTACACAGTTGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGAAAATCTTTTGACTACTCACAATCTATAAAAACTTCGACTCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGGGGTGGTCATATCCAGCCCTTTGGATGTATGATAGCTATTGAAGAGGCTAGTTTTCGAGTTATTGCGTACAGTGAAAACGCTAGGGAATTGCTCGGTCTGACGCCTCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTTACAATTGGGACTGATGTACGCAACTTGTTCACTTCCAATAGTGCAATTCTACTAGAGAAGGCGTTTGGGGCTCGAGAAATCACTTTGTTGAACCCAGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTCTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCTCTTTCTATTGCTGGAGCAGTACAATCGCAGAAGCTTGCGGTACGTGCAATTTCTCAGTTACAAGCACTCCCTGGCGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGGTATGATAGAGTTATGGTGTACAAGTTTCATGAGGATGAGCATGGTGAGGTTGTAGCTGAAAGTAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGCGTTAGGATGATTGTTGATTGCCATGCCTCTCCAGTTCGTGTAATTCAGGATGCAGGGCTTATGCAACATCTCTGCTTGGTGGGTTCAACTCTTCGTGCACCCCATGGTTGCCATGCCCAGTATATGGCCAATATGGGCTCTATTGCTTCGTTAGCAATGGCAGTTGTTATCAACGGTAATGATGATGAAGCTATTGGTGGACGAAACTCAACAAGGCTTTGGGGTTTGGTTGTATGTCATCATACTTCTGCTCGGTGCATTCCGTTCCCACTCCGGTATGCGTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCCTCACAGTTGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTACTCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCTCTGGGTGTGACGCCAACTGAGGCCCAAATAAAGGATATTGTGGAGTGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGGGCAGCCTTGCTGGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACCAAAAAGGATTTTCTATTTTGGTTCCGATCTCATACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCGGAGGATAAGGATGATGGTCAAAGAATGCATCCGCGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAACGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTACGTGATTCATTTAAGAACGATGTGGCAATCAATTCAAAGGCAGTTGTGCACCCTCATCTAGGGGATCTTGACTTGCAGGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGCTGATGGTCGTATCAATGGATGGAATGCTAAGATAGCTGAGTTGACTGGGCTTGCGGTTGAGGAGGCTATGGGGAAATCCTTGGTTCGTGATCTTGTGTACAAAGAGTCTGAAGAAACAGTTGACAGACTTGTTTCCCGTGCTTTAAAAGGTGAAGAAGATAAAAATATAGAGATAAAAATGAGGACATTTGGGCCAGAAGAAGATCAAAGGACGCCATTTTTTGTTGTCGTAAATGCTTGCTCTAGCAGGGACTACACTGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTGTAAGCATACAAGGTGATTATAAAGCAATTATTCATAGCCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCGGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGAGAGGACATAATTGGAAAAATGCTAGTAGGAGAGGTTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCCTGCACAGTGCAATTGGAGGGCAGGATAATGAAAAATACCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCTTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCAAGTCCAGAATTGCAACAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTCCTTGAGACCAGTGTTGCTTGTGAAAAACAAATGCTAAAGATTATTGAGGATATGGACTTGGAGTGTATTGATGATGGCACAATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGATACTACTCAGAGAAAGAAGCTTACAACTGATTCGTGATATACCAGAAGAAGTAAAGACCATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCCGATTTCTTGTTGAATATGGTCCGTTACGCACCCTCTCCGGAAGGCTGGGTAGAAATACGTGTCTGTCCATTACTGAAGCAAAACTCAGATGGAATTACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTAGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTACAATACATCAGGGAATCTGAAAGATGCTATTTCTTGATTACTCTCGAACTCCCCTTGACAGAGAGAGGCCTAAACGATGTCGGTTAGTTTTTTCGATCACTTGCAGACTTTTCCTCATTAACATAAGATACCTGTGTAATTTCCCAGCCATTGTTTATAAGCCAAGCTCTGAGCTTACATGTCGTTGAGGCCGTGTGATATAATTAGTAGGTGAATAAAGACTGTTTAGTACATCACTTCCACTGATCTACTTATTCTAGATGCTAATGTATGAGGTACTACAGAATTATCTTCTTCTCTTTTCTTCAAGTTTGGGGGGTGGGGGCAATAATAACAATGTTGGTGTTAGAGATTCCTCTATTGGAGGAATTTTAGGTCCTTGTTAATTTGAGTTGCATCTTCAATCTGGTGTATGTACTTAGAGATGTATACTATTCTTACCATTTCTTCCTCATAATTTATGTAATGTTAAAAACTATTAGCTGCTGGCTTAGAGAAAGGGGAGAAGAAAATTTTTTTGTGGCATGGATGAATATTTGAGATTTATAGTCAATGCAGTGAAC
CDS Sequence
- >Csa_3G166340
ATGGTTTCCAGTAATCGAGCAACTCATTCGCATCAACAACAAGCGCAGTCTTCGAACACGAATACCAGCAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCTATAGCGCAGTACACAGTTGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGAAAATCTTTTGACTACTCACAATCTATAAAAACTTCGACTCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGGGGTGGTCATATCCAGCCCTTTGGATGTATGATAGCTATTGAAGAGGCTAGTTTTCGAGTTATTGCGTACAGTGAAAACGCTAGGGAATTGCTCGGTCTGACGCCTCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTTACAATTGGGACTGATGTACGCAACTTGTTCACTTCCAATAGTGCAATTCTACTAGAGAAGGCGTTTGGGGCTCGAGAAATCACTTTGTTGAACCCAGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTCTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCTCTTTCTATTGCTGGAGCAGTACAATCGCAGAAGCTTGCGGTACGTGCAATTTCTCAGTTACAAGCACTCCCTGGCGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGGTATGATAGAGTTATGGTGTACAAGTTTCATGAGGATGAGCATGGTGAGGTTGTAGCTGAAAGTAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGCGTTAGGATGATTGTTGATTGCCATGCCTCTCCAGTTCGTGTAATTCAGGATGCAGGGCTTATGCAACATCTCTGCTTGGTGGGTTCAACTCTTCGTGCACCCCATGGTTGCCATGCCCAGTATATGGCCAATATGGGCTCTATTGCTTCGTTAGCAATGGCAGTTGTTATCAACGGTAATGATGATGAAGCTATTGGTGGACGAAACTCAACAAGGCTTTGGGGTTTGGTTGTATGTCATCATACTTCTGCTCGGTGCATTCCGTTCCCACTCCGGTATGCGTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCCTCACAGTTGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTACTCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCTCTGGGTGTGACGCCAACTGAGGCCCAAATAAAGGATATTGTGGAGTGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGGGCAGCCTTGCTGGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACCAAAAAGGATTTTCTATTTTGGTTCCGATCTCATACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCGGAGGATAAGGATGATGGTCAAAGAATGCATCCGCGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAACGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTACGTGATTCATTTAAGAACGATGTGGCAATCAATTCAAAGGCAGTTGTGCACCCTCATCTAGGGGATCTTGACTTGCAGGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGCTGATGGTCGTATCAATGGATGGAATGCTAAGATAGCTGAGTTGACTGGGCTTGCGGTTGAGGAGGCTATGGGGAAATCCTTGGTTCGTGATCTTGTGTACAAAGAGTCTGAAGAAACAGTTGACAGACTTGTTTCCCGTGCTTTAAAAGGTGAAGAAGATAAAAATATAGAGATAAAAATGAGGACATTTGGGCCAGAAGAAGATCAAAGGACGCCATTTTTTGTTGTCGTAAATGCTTGCTCTAGCAGGGACTACACTGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTGTAAGCATACAAGGTGATTATAAAGCAATTATTCATAGCCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCGGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGAGAGGACATAATTGGAAAAATGCTAGTAGGAGAGGTTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCCTGCACAGTGCAATTGGAGGGCAGGATAATGAAAAATACCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCTTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCAAGTCCAGAATTGCAACAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTCCTTGAGACCAGTGTTGCTTGTGAAAAACAAATGCTAAAGATTATTGAGGATATGGACTTGGAGTGTATTGATGATGGCACAATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGATACTACTCAGAGAAAGAAGCTTACAACTGATTCGTGATATACCAGAAGAAGTAAAGACCATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCCGATTTCTTGTTGAATATGGTCCGTTACGCACCCTCTCCGGAAGGCTGGGTAGAAATACGTGTCTGTCCATTACTGAAGCAAAACTCAGATGGAATTACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTAGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTACAATACATCAGGGAATCTGAAAGATGCTATTTCTTGATTACTCTCGAACTCCCCTTGACAGAGAGAGGCCTAAACGATGTCGGTTAG
Protein Sequence
- >Csa_3G166340
MVSSNRATHSHQQQAQSSNTNTSNLRSHRTDSISKAIAQYTVDARLHAVFEQSGESGKSFDYSQSIKTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIEEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKNDVAINSKAVVHPHLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEETVDRLVSRALKGEEDKNIEIKMRTFGPEEDQRTPFFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFVSIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERSLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPLLKQNSDGITLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDVG