Information report for BnaUPL3.C03
Gene Details
|
|
Functional Descriptions
- Variation in the promoter region of the HECT E3 ligase gene BnaUPL3.C03 made a major contribution to variation in seed weight per pod, with accessions exhibiting high seed weight per pod having lower levels of BnaUPL3.C03 expression.
- Analysis of elite oilseed rape varieties shows that variation in the expression of BnaUPL3.C03 has not yet been exploited in breeding programs and thus can be used to increase crop yields.
- Associative Transcriptomics Identifies a Negative Correlation between BnaUPL3.C03 Expression and Seed Weight per Pod in B. napus.
- This indicated that variation in the expression of BnaUPL3.C03 contributed to variation in SWPP.
Functional Keywords
- seed , breeding , seed-weight
Literature and News
Sequences
cDNA Sequence
- >BnaC03g60070D
GGACGGAGGAAAACGGTATCGTATTCGCTTCGCTTGAATCTATATATTTTGCGCAAAAGCCCTTTTCATCCCTTTCTTCTCTCATTACTCGATTTAGGGTTTTCTAATCTCGAAAGAAATCAAGATCCTCCTTCCTTCCTCTCTCGATTTCGATCTCGTAGCCCCTTTTGCGTTGATTTCGAATTCGTTCATCAATAGCTTTGTTTCTCTCTAGCTCCTATCGATCTCGCTAGCAAATTAGGGTTTCGAGCGAGCTTAATCCGATCGGTTTCTGGATCAGTTGAGATGCGATCGGAATCTCTCTGAATAAGAGAGACTCGTGTGGAGGGGTTTCTTCCTTTGTATGGAAACTCGGAGCCGCAAGCGTGCGGAGGCGACCTCAACTGCCCCATCTTCTTCTTCTTCGTCTCCTCCTCCTCCTCCCTCAGGTCCCACCACTCGCAGCAAACGCGCTCGCCTCTCGTCTCCCTCTTCCTCTTCAGCCGCCGCCGCTACCACCGCTACTGCACCTTCCTCCTCCACCCGCTCTCGTTCTTCTCGCTCTGCCGCTACCGCTACCGCTACAGCCGCCGTTACTCCCATGGACACATCCACCGAGTCTTCTGGATTCCGCCGCGGCGGGGGACGAGGTAACAGGGGAAACGATAATACTAATTCTGATAAGGGAAAGGAGAAGGAGCATGAGGTTAGGATTAGGGATAGAGAAAGAGACCGAGCCAGACAGCAGCTCAACATGGACGCTGCAGCTGCTGCAGCCGCCGCCGCTGAAGAGGACGATGACAATGATAGTGAGGATGGCAACGGGGGATTCATGCATCCCAACATGAGCTCAGCCAGCAGTGCGTTACAAGGGTTGCTGAGGAAGCTTGGAGCTGGACTTGATGACTTGCTTCCTTCTTCAGGTATTGGCTCAGGTTCTTCCTCCCACTTAAATGGGAGGATGAAGAAGATACTCGCTGGCTTGCGCTCTGAAGGAGAAGAGGGAAAGCAGGTCGAGGCTTTGACCCAGCTCTGCGAGATGTTATCCATTGGCACCGAAGACTCCTTGAGCACCTTCTCTGTTGATTCCTTCGTCCCCGTTCTTGTTGGTCTACTTAACCATGAGAGCAATCCGGATATTATGCTTCTTGCTGCCAGGGCTCTTACCCATCTGTGTGATGTTTTGCCCTCTTCTTGTGCTGCTGTTGTTCATTACGGGGCTGTTTCATGCTTTGTCGCCAGATTGCTAACCATTGAATACATGGACTTGGCCGAGCAGTCTCTGCAAGCTCTCAAAAAGATATCTCAGGAACACCCAACGGCCTGTTTGCGAGCTGGTGCTCTTATGGCAGTGCTATCATATCTGGATTTCTTCTCCACCGGTGTCCAGCGTGTAGCAGTCTCTACCGCTGCAAATATGTGCAAGAAGTTACCTTCTGATGCATCTGATTATGTTATGGAAGCTGTACCGGTACTGACAAACCTACTTCAGTATCATGATGCGAAGGTTTTGGAATATGCTTCTATCTGTTTGACTCGGATTGCCGAAGCATTTGCATCGTCCCCTGATAAATTAGATGAATTATGCAACCATGGCCTGGTGACTCAAGCTGCGACTCTTATATCCGCTAGCAACTCGGGAGGTGGGCAAGCATCTCTTGGTGTTTCAACATACACGGGATTAATCCGATTACTTTCCACCTGTGCGAGCGGTTCACCTCTTGGGTGCAGGACATTACTTCTTCTCGGTATTAGTAGCATTCTTAAGGATATTCTGTCGGGTTCTGGTGTCTCTGCTAATGCATCTATATCCCCAGCACTGAGCAGGCCTGCAGATCAGATTTTTGAGATAGTCAACCTAGCGAACGAGCTCCTCCCTCCATTGCCAGAAGGAAGTATCTCCCTTCCTACTAGCGCAAACGCGTTAGTGAAAGGTTCAGGCCAAAAAAATTCTTCTCCAAGTACTTCAGGAAAACAAGAAGATTCTCCCAAAGTTTCACCTAGAGAAAAATTACTTAGTGATCAACCCGAACTTTTGCAGCAATTTGGATTGGATCTTCTTCCAGTTTTAGTGCAGATCTATGGTTCTAGTGTCAATGGTACTATTCGTCATAAATGTCTCTCCGTTATCGCAAAGTTGATGTATTTCAGCACTCCAGAAATGATTCAATCTCTAATTGGTGACACAAATATATCGAGCTTCTTGGCTAGTGTCTTGGCATGGAAAGATCCACAAGTCTTGGTTCCTGCTCTACAAGTTGCAGAAATTCTGATGGAAAAACTTCCTGAAACTTTCTCGAAAGTGTTTGTGAGGGAAGGGGTGGTTCATGCTGTAGATCAACTTGTCTTGGTTGGTAAACCTAGTGCTAATGCTTCTACTGATCAGGAAAATGACTGTGTGCCTGGATCTGCACGATCTAGGCGTTACAGACGGCGAAGTAGTAATGCCAATTCTGATGGAAATCAGTCGGAAGAGCTTAAGAATTCTGTGTCAGCTAGCATAGGTGCGACCCATAATTCCATGGAATCTCCTACAGCGAGCTTCATGCTAAGGGAAACAGTTAGCTCCTGTGCAAAAGCATTCAAAGACAAGCACTTCCCGTCTGATGGTGGGGAATTTGATGTTGGAGTTACAGATGATCTCTTGCATCTGAAGAATCTTTGCACGAAGCTAACTGCTGGTACAAATGATCATAAAGTGAAAGGAAAGGGGAAATCTAAAGTCTCTGGGCCATGCCTTGGCGATTTTTCTGCTAGCAAAGAAGAATACTTGATTGGTATCATCTCCGAGATACTTGGCGAGCTAAGCAAAGGGGATGGCGTCTCAACTTTTGAGTTTATTGGCAGTGGTGTGGTAGCAGCATTGCTTAACTATTTTTCTTATGGATACTTTTCCAAAGAGAAGATCTCCGAGGTTGATTTGCCCAAACTTCGCCAGGATGGGCTCAGAAGAAACTTCAAGATGCTTTGTCTTCACTGGAACGCTTTCCGGTCGTCCTTAGCCATCCCTCAAGGTCACTCAGTGGAAGTGCTCGTCTCTCATCTGGATTGA
CDS Sequence
- >BnaC03g60070D
ATGGAAACTCGGAGCCGCAAGCGTGCGGAGGCGACCTCAACTGCCCCATCTTCTTCTTCTTCGTCTCCTCCTCCTCCTCCCTCAGGTCCCACCACTCGCAGCAAACGCGCTCGCCTCTCGTCTCCCTCTTCCTCTTCAGCCGCCGCCGCTACCACCGCTACTGCACCTTCCTCCTCCACCCGCTCTCGTTCTTCTCGCTCTGCCGCTACCGCTACCGCTACAGCCGCCGTTACTCCCATGGACACATCCACCGAGTCTTCTGGATTCCGCCGCGGCGGGGGACGAGGTAACAGGGGAAACGATAATACTAATTCTGATAAGGGAAAGGAGAAGGAGCATGAGGTTAGGATTAGGGATAGAGAAAGAGACCGAGCCAGACAGCAGCTCAACATGGACGCTGCAGCTGCTGCAGCCGCCGCCGCTGAAGAGGACGATGACAATGATAGTGAGGATGGCAACGGGGGATTCATGCATCCCAACATGAGCTCAGCCAGCAGTGCGTTACAAGGGTTGCTGAGGAAGCTTGGAGCTGGACTTGATGACTTGCTTCCTTCTTCAGGTATTGGCTCAGGTTCTTCCTCCCACTTAAATGGGAGGATGAAGAAGATACTCGCTGGCTTGCGCTCTGAAGGAGAAGAGGGAAAGCAGGTCGAGGCTTTGACCCAGCTCTGCGAGATGTTATCCATTGGCACCGAAGACTCCTTGAGCACCTTCTCTGTTGATTCCTTCGTCCCCGTTCTTGTTGGTCTACTTAACCATGAGAGCAATCCGGATATTATGCTTCTTGCTGCCAGGGCTCTTACCCATCTGTGTGATGTTTTGCCCTCTTCTTGTGCTGCTGTTGTTCATTACGGGGCTGTTTCATGCTTTGTCGCCAGATTGCTAACCATTGAATACATGGACTTGGCCGAGCAGTCTCTGCAAGCTCTCAAAAAGATATCTCAGGAACACCCAACGGCCTGTTTGCGAGCTGGTGCTCTTATGGCAGTGCTATCATATCTGGATTTCTTCTCCACCGGTGTCCAGCGTGTAGCAGTCTCTACCGCTGCAAATATGTGCAAGAAGTTACCTTCTGATGCATCTGATTATGTTATGGAAGCTGTACCGGTACTGACAAACCTACTTCAGTATCATGATGCGAAGGTTTTGGAATATGCTTCTATCTGTTTGACTCGGATTGCCGAAGCATTTGCATCGTCCCCTGATAAATTAGATGAATTATGCAACCATGGCCTGGTGACTCAAGCTGCGACTCTTATATCCGCTAGCAACTCGGGAGGTGGGCAAGCATCTCTTGGTGTTTCAACATACACGGGATTAATCCGATTACTTTCCACCTGTGCGAGCGGTTCACCTCTTGGGTGCAGGACATTACTTCTTCTCGGTATTAGTAGCATTCTTAAGGATATTCTGTCGGGTTCTGGTGTCTCTGCTAATGCATCTATATCCCCAGCACTGAGCAGGCCTGCAGATCAGATTTTTGAGATAGTCAACCTAGCGAACGAGCTCCTCCCTCCATTGCCAGAAGGAAGTATCTCCCTTCCTACTAGCGCAAACGCGTTAGTGAAAGGTTCAGGCCAAAAAAATTCTTCTCCAAGTACTTCAGGAAAACAAGAAGATTCTCCCAAAGTTTCACCTAGAGAAAAATTACTTAGTGATCAACCCGAACTTTTGCAGCAATTTGGATTGGATCTTCTTCCAGTTTTAGTGCAGATCTATGGTTCTAGTGTCAATGGTACTATTCGTCATAAATGTCTCTCCGTTATCGCAAAGTTGATGTATTTCAGCACTCCAGAAATGATTCAATCTCTAATTGGTGACACAAATATATCGAGCTTCTTGGCTAGTGTCTTGGCATGGAAAGATCCACAAGTCTTGGTTCCTGCTCTACAAGTTGCAGAAATTCTGATGGAAAAACTTCCTGAAACTTTCTCGAAAGTGTTTGTGAGGGAAGGGGTGGTTCATGCTGTAGATCAACTTGTCTTGGTTGGTAAACCTAGTGCTAATGCTTCTACTGATCAGGAAAATGACTGTGTGCCTGGATCTGCACGATCTAGGCGTTACAGACGGCGAAGTAGTAATGCCAATTCTGATGGAAATCAGTCGGAAGAGCTTAAGAATTCTGTGTCAGCTAGCATAGGTGCGACCCATAATTCCATGGAATCTCCTACAGCGAGCTTCATGCTAAGGGAAACAGTTAGCTCCTGTGCAAAAGCATTCAAAGACAAGCACTTCCCGTCTGATGGTGGGGAATTTGATGTTGGAGTTACAGATGATCTCTTGCATCTGAAGAATCTTTGCACGAAGCTAACTGCTGGTACAAATGATCATAAAGTGAAAGGAAAGGGGAAATCTAAAGTCTCTGGGCCATGCCTTGGCGATTTTTCTGCTAGCAAAGAAGAATACTTGATTGGTATCATCTCCGAGATACTTGGCGAGCTAAGCAAAGGGGATGGCGTCTCAACTTTTGAGTTTATTGGCAGTGGTGTGGTAGCAGCATTGCTTAACTATTTTTCTTATGGATACTTTTCCAAAGAGAAGATCTCCGAGGTTGATTTGCCCAAACTTCGCCAGGATGGGCTCAGAAGAAACTTCAAGATGCTTTGTCTTCACTGGAACGCTTTCCGGTCGTCCTTAGCCATCCCTCAAGGTCACTCAGTGGAAGTGCTCGTCTCTCATCTGGATTGA
Protein Sequence
- >BnaC03g60070D
METRSRKRAEATSTAPSSSSSSPPPPPSGPTTRSKRARLSSPSSSSAAAATTATAPSSSTRSRSSRSAATATATAAVTPMDTSTESSGFRRGGGRGNRGNDNTNSDKGKEKEHEVRIRDRERDRARQQLNMDAAAAAAAAAEEDDDNDSEDGNGGFMHPNMSSASSALQGLLRKLGAGLDDLLPSSGIGSGSSSHLNGRMKKILAGLRSEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVAVSTAANMCKKLPSDASDYVMEAVPVLTNLLQYHDAKVLEYASICLTRIAEAFASSPDKLDELCNHGLVTQAATLISASNSGGGQASLGVSTYTGLIRLLSTCASGSPLGCRTLLLLGISSILKDILSGSGVSANASISPALSRPADQIFEIVNLANELLPPLPEGSISLPTSANALVKGSGQKNSSPSTSGKQEDSPKVSPREKLLSDQPELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLSVIAKLMYFSTPEMIQSLIGDTNISSFLASVLAWKDPQVLVPALQVAEILMEKLPETFSKVFVREGVVHAVDQLVLVGKPSANASTDQENDCVPGSARSRRYRRRSSNANSDGNQSEELKNSVSASIGATHNSMESPTASFMLRETVSSCAKAFKDKHFPSDGGEFDVGVTDDLLHLKNLCTKLTAGTNDHKVKGKGKSKVSGPCLGDFSASKEEYLIGIISEILGELSKGDGVSTFEFIGSGVVAALLNYFSYGYFSKEKISEVDLPKLRQDGLRRNFKMLCLHWNAFRSSLAIPQGHSVEVLVSHLD