Information report for AT5G42900
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Functional Keywords
Literature and News
- Comparative analysis of expressed sequence tags in resistant and susceptible ecotypes of Arabidopsis thaliana infected with cucumber mosaic virus. DOI: 10.1093/pcp/pch057 ; PMID: 15111722
- Pseudomonas syringae pv. tomato hijacks the Arabidopsis abscisic acid signalling pathway to cause disease. DOI: 10.1038/sj.emboj.7601575 ; PMID: 17304219
- Functional redundancy and new roles for genes of the autonomous floral-promotion pathway. DOI: 10.1104/pp.108.118927 ; PMID: 18408043
- Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. DOI: 10.1104/pp.108.126979 ; PMID: 18805951
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- A role for circadian evening elements in cold-regulated gene expression in Arabidopsis. DOI: 10.1111/j.1365-313X.2009.03957.x ; PMID: 19566593
- Karrikins enhance light responses during germination and seedling development in Arabidopsis thaliana. DOI: 10.1073/pnas.0911635107 ; PMID: 20351290
- Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening. DOI: 10.1111/ppl.12013 ; PMID: 23517122
- and Low Temperature-Regulated COR27 and COR28 Play Roles in the Arabidopsis Circadian Clock. DOI: 10.1105/tpc.16.00354 ; PMID: 27837007
- COR27 and COR28 encode nighttime repressors integrating Arabidopsis circadian clock and cold response. DOI: 10.1111/jipb.12512 ; PMID: 27990760
- COLD-REGULATED GENE27 Integrates Signals from Light and the Circadian Clock to Promote Hypocotyl Growth in Arabidopsis. DOI: 10.1105/tpc.20.00192 ; PMID: 32732313
- COR27 and COR28 Are Novel Regulators of the COP1-HY5 Regulatory Hub and Photomorphogenesis in Arabidopsis. DOI: 10.1105/tpc.20.00195 ; PMID: 32769132
Gene Resources
- UniProt: A0A5S9YAF5
- EMBL: CACRSJ010000110, CACSHJ010000096
- AlphaFoldDB: A0A5S9YAF5
- EnsemblPlants: AT5G42900.1, AT5G42900.2
- Gramene: AT5G42900.1, AT5G42900.2
- KEGG: ath:AT5G42900
- Orthologous matrix: KTHCISS
- ExpressionAtlas: AT5G42900
- InterPro: IPR044678
- PANTHER: PTHR33676, PTHR33676:SF3
- OrthoDB: A0A5S9YAF5
Sequences
cDNA Sequence
- >AT5G42900.2
TGTGTTTGAAATATCTAAAACCAAAAAGTTTCATCTCTTCATTCCGCCAAATTGACTGGTGATGACGTGGCAACTTTACCCACGTGTAAAAGCGTCTACAACTGTATCGTTTCTTTTGATATTTTGTTTCTCTCTTTCTCTCTGATATTTTTCATTTTCTTCTTCTTCTCTCTCTCTCTCCACAAAGATAAGCCAACAATGGTTGGTGATTACAGAGGACGCTTTAGTAGCCGTCGTTTCTCCGATGACTCTGACGATTCTTCCGACGATGCTTCTTCCGTGGAGGGAGAGACCACTTCTTCCATGTACTCTGCGGGGAAAGAGTATATGGAAACAGAATGGACTAATGAGAAGCATAGTTTATATCTTAAATCTATGGAAGCTTCATTCGTAGATCAGTTATATAACTCGCTCGGAGCTCTCGGGAAGAACGAGAATGTATCCGAATCAACGAGGTTCGGTAGCGGTAGAAAACCGTCTCAAGAACAGTTCAAGGTTCTTCATGATGGTTTCTGGCAGAAGATTAATGTGAAACAACCTGAACATCGGATTAACGGAAGGCACGGTGGTAATTCTCATGAGTTTCTTAGGAGTCCATGGATTAAGCATTATAAACCTTTAGTAAAGACACAAATCCCGGTAACGGATGAGCCCGAAAATCAAGTTGTTAGCAGCTCTAATGGGAAGAAGGGAATATGCAGCTCTGGCTCAGCCTCTAGTCTCAAGCAGCTAAGCTCTCATTCGCGTGACCACGACCAAATCAGCGTTGGAGAAGCAGAGGTATCGGATCAGAACTTTGTTAACGAAGGAATAAAAGGCGAAAACGGAAGCTCGAAGAAGATGAAGACGGTGATGATGAGTGAATCGTCGAGTACCGATCAGGTTGTTCCACTCAATAAACTCTTGCAACATGACGTAAATTTGAAGTCTGTTTCTTGAGAGGTCAGATGGTGAAGCTTTATATGAGGAGAGAATTTTGTAATGTATATATATTTGCATAACTTATAAGTCAAATTTACTATCCTTAGTTACAAGTTTCTTCATCATATATCCCTAACTATAAATATATTTATATGCTCATGTGAGTGGATTCATTTGTACTGTAAAACCCTTAGAAAGACGTCAAATTAGTATTTGATGGTTTAGTGTTGTCTTGTTACCACTATAGTATAAAATTTCAAGTTCCTTAATTTTCTTTTATGTTGCCCATACAATAAAAATGGTGGTCGAATAAAGGTAAAAGATAATAAAAAATAATTGAGCCGGTTATTATACAAACGGTGTTGTTTGGATAAAGCTAATTGGCTAAGGGTTGTGTATGTGTTGGAATCAAACCTTGATTAATTTCGAAGAAGAATCTAGGAATGAGAAAAGAAAGTGAAGAGG - >AT5G42900.3
TGTGTTTGAAATATCTAAAACCAAAAAGTTTCATCTCTTCATTCCGCCAAATTGACTGGTGATGACGTGGCAACTTTACCCACGTGTAAAAGCGTCTACAACTGTATCGTTTCTTTTGATATTTTGTTTCTCTCTTTCTCTCTGATATTTTTCATTTTCTTCTTCTTCTCTCTCTCTCTCCACAAAGATAAGCCAACAATGGTTGGTGATTACAGAGGACGCTTTAGTAGCCGTCGTTTCTCCGATGACTCTGACGATTCTTCCGACGATGCTTCTTCCGTGGAGGGAGAGACCACTTCTTCCATGTACTCTGCGGGGAAAGAGTATATGGAAACAGAATGGACTAATGAGAAGCATAGTTTATATCTTAAATCTATGGAAGCTTCATTCGTAGATCAGTTATATAACTCGCTCGGAGCTCTCGGGAAGAACGAGAATGTATCCGAATCAACGAGGTTCGGTAGCGGTAGAAAACCGTCTCAAGAACAGTTCAAGGTTCTTCATGATGGTTTCTGGCAGAAGATTAATGTGAAACAACCTGAACATCGGATTAACGGAAGGCACGGTGGTAATTCTCATGAGTTTCTTAGGAGTCCATGGATTAAGCATTATAAACCTTTAGTAAAGACACAAATCCCGGTAACGGATGAGCCCGAAAATCAAGTTGTTAGCAGCTCTAATGGGAAGAAGGGAATATGCAGCTCTGGCTCAGCCTCTAGTCTCAAGCAGCTAAGCTCTCATTCGCGTGACCACGACCAAATCAGCGTTGGAGAAGCAGAGGTATCGGATCAGAACTTTGTTAACGAAGGAATAAAAGGCGAAAACGGAAGCTCGAAGAAGATGAAGACGGTGATGATGAGTGAATCGTCGAGTACCGATCAGGTTGTTCCACTCAATAAACTCTTGCAACATGACGTAAATTTGAAGTCTGTTTCTTGAGAGGTCAGATGGTGAAGCTTTATATGAGGAGAGAATTTTGTAATGTATATATATTTGCATAACTTATAAGTCAAATTTACTATCCTTAGTTACAAGTTTCTTCATCATATATCCCTAACTATAAATATATTTATATGCTCATGTGAGTGGATTCATTTGTACTGTAAAACCCTTAGAAAGACGTCAAATTAGTATTTGATGGTTTAGTGTTGTCTTGTTACCACTATAGTATAAAATTTCAAGTTCCTTAATTTTCTTTTATGTTGCCCATACAATAAAAATGGTGGTCGAATAAAGGTAAAAGATAATAAAAAATAATTGAGCCGGTTATTATACAAACGGTGTTGTTTGGATAAAGCTAATTGGCTAAGGGTTGTGTATGTGTTGGAATCAAACCTTGATTAATTTCGAAGAAGAATCTAGGAATGAGAAAAGAAAGTGAAGAGG - >AT5G42900.1
TGTGTTTGAAATATCTAAAACCAAAAAGTTTCATCTCTTCATTCCGCCAAATTGACTGGTGATGACGTGGCAACTTTACCCACGTGTAAAAGCGTCTACAACTGTATCGTTTCTTTTGATATTTTGTTTCTCTCTTTCTCTCTGATATTTTTCATTTTCTTCTTCTTCTCTCTCTCTCTCCACAAAGATAAGCCAACAATGGTTGGTGATTACAGAGGACGCTTTAGTAGCCGTCGTTTCTCCGATGACTCTGACGATTCTTCCGACGATGCTTCTTCCGTGGAGGGAGAGACCACTTCTTCCATGTACTCTGCGGGGAAAGAGTATATGGAAACAGAATGGACTAATGAGAAGCATAGTTTATATCTTAAATCTATGGAAGCTTCATTCGTAGATCAGTTATATAACTCGCTCGGAGCTCTCGGGAAGAACGAGAATGTATCCGAATCAACGAGGTTCGGTAGCGGTAGAAAACCGTCTCAAGAACAGTTCAAGGTTCTTCATGATGGTTTCTGGCAGAAGATTAATGTGAAACAACCTGAACATCGGATTAACGGAAGGCACGGTGGTAATTCTCATGAGTTTCTTAGGAGTCCATGGATTAAGCATTATAAACCTTTAGTAAAGACACAAATCCCGGTAACGGATGAGCCCGAAAATCAAGTTGTTAGCAGCTCTAATGGGAAGAAGGGAATATGCAGCTCTGGCTCAGCCTCTAGTCTCAAGCAGCTAAGCTCTCATTCGCGTGACCACGACCAAATCAGCGTTGGAGAAGCAGAGGTATCGGATCAGAACTTTGTTAACGAAGGAATAAAAGGCGAAAACGGAAGCTCGAAGAAGATGAAGACGGTGATGATGAGTGAATCGTCGAGTACCGATCAGGTTGTTCCACTCAATAAACTCTTGCAACATGACGTAAATTTGAAGTCTGTTTCTTGAGAGGTCAGATGGTGAAGCTTTATATGAGGAGAGAATTTTGTAATGTATATATATTTGCATAACTTATAAGTCAAATTTACTATCCTTAGTTACAAGTTTCTTCATCATATATCCCTAACTATAAATATATTTATATGCTCATGTGAGTGGATTCATTTGTACTGTAAAACCCTTAGAAAGACGTCAAATTAGTATTTGATGGTTTAGTGTTGTCTTGTTACCACTATAGTATAAAATTTCAAGTTCCTTAATTTTCTTTTATGTTGCCCATACAATAAAAATGGTGGTCGAATAAAGGTAAAAGATAATAAAAAATAATTGAGCCGGTTATTATACAAACGGTGTTGTTTGGATAAAGCTAATTGGCTAAGGGTTGTGTATGTGTTGGAATCAAACCTTGATTAATTTCGAAGAAGAATCTAGGAATGAGAAAAGAAAGTGAAGAGG
CDS Sequence
Protein Sequence