Information report for AT5G42630
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0020021 — plant ovule integument — integumento (Spanish, exact), portion of integument tissue (exact), 珠皮 (Japanese, exact), Poaceae integument (narrow), Zea integument (narrow)
- PO:0000282 — trichome — tricoma (Spanish, exact), 毛茸、糸状体、毛 (Japanese, exact), seta (related), setae (related), capilli (narrow), capillus (narrow), cilia (narrow), cilium (narrow), glochid (narrow), glochidia (narrow), glochidium (narrow), hair (narrow), lepides (narrow), lepis (narrow), non-secretory trichome (narrow), scale (narrow), squama (narrow), squamae (narrow), squamella (narrow), squamellae (narrow), squamule (narrow), barb trichome (broad), bristle (broad)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0080060 — acts upstream of or within — integument development
- GO:0080060 — involved in — integument development
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0005634 — located in — nucleus
- GO:0048481 — acts upstream of or within — plant ovule development
- GO:0009505 — located in — plant-type cell wall
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0010158 — involved in — abaxial cell fate specification
- GO:0005634 — is active in — nucleus
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- A Seed Shape Mutant of Arabidopsis That Is Affected in Integument Development. DOI: 10.1105/tpc.6.3.385 ; PMID: 12244241
- Establishment of polarity in lateral organs of plants. DOI: 10.1016/s0960-9822(01)00392-x ; PMID: 11525739
- ABERRANT TESTA SHAPE encodes a KANADI family member, linking polarity determination to separation and growth of Arabidopsis ovule integuments. DOI: 10.1111/j.1365-313X.2006.02717.x ; PMID: 16623911
- Roles of polarity determinants in ovule development. DOI: 10.1111/j.1365-313X.2008.03752.x ; PMID: 19054366
- Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants. DOI: 10.1186/1471-2229-9-29 ; PMID: 19291320
- ETTIN (ARF3) physically interacts with KANADI proteins to form a functional complex essential for integument development and polarity determination in Arabidopsis. DOI: 10.1242/dev.067918 ; PMID: 22296848
- Regulation of planar growth by the Arabidopsis AGC protein kinase UNICORN. DOI: 10.1073/pnas.1205089109 ; PMID: 22927420
- Starting to gel: how Arabidopsis seed coat epidermal cells produce specialized secondary cell walls. DOI: 10.3390/ijms16023452 ; PMID: 25658798
- Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). DOI: 10.1111/nph.13460 ; PMID: 25991552
- Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. DOI: 10.1186/s12870-016-0835-z ; PMID: 27350128
- Insights into the role of transcription factors controlling mucilage production in the Arabidopsis seed coat. DOI: 10.1016/j.plantsci.2018.04.021 ; PMID: 29807590
- The AGC protein kinase UNICORN controls planar growth by attenuating PDK1 in Arabidopsis thaliana. DOI: 10.1371/journal.pgen.1007927 ; PMID: 30742613
- Phylogenetic analyses of key developmental genes provide insight into the complex evolution of seeds. DOI: 10.1016/j.ympev.2020.106778 ; PMID: 32165160
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- NOZZLE links proximal-distal and adaxial-abaxial pattern formation during ovule development in Arabidopsis thaliana. DOI: 10.1242/dev.129.18.4291 ; PMID: 12183381
- A Seed Shape Mutant of Arabidopsis That Is Affected in Integument Development. DOI: 10.1105/tpc.6.3.385 ; PMID: 12244241
- KANADI and class III HD-Zip gene families regulate embryo patterning and modulate auxin flow during embryogenesis in Arabidopsis. DOI: 10.1105/tpc.106.047472 ; PMID: 17307928
Gene Resources
- UniProt: A0A654G7C7
- EMBL: CACRSJ010000110
- AlphaFoldDB: A0A654G7C7
- EnsemblPlants: AT5G42630.1
- Gramene: AT5G42630.1
- KEGG: ath:AT5G42630
- Orthologous matrix: MFTNSHT
- ExpressionAtlas: AT5G42630
- InterPro: IPR001005, IPR006447, IPR009057
- PANTHER: PTHR31496, PTHR31496:SF56
- SUPFAM: SSF46689
- Gene3D: 1.10.10.60
- SWISS-MODEL: A0A654G7C7
Sequences
cDNA Sequence
- >AT5G42630.2
AATAAAAGTGTTGTTTCTGCAGAGCTCTCTCTCTCTCTCTCGTTCTCTTTCCACACATTCTTTGATCTCCACTATTTAAGTAGACAAGAATCATAAAGAAAATAGTGAGATGATGATGTTAGAGTCAAGAAACAGTATGAGAGCTTCAAACTCAGTCCCAGATCTGTCTCTTCAGATCAGTCTTCCTAACTATCACGCCGGAAAACCTCTTCACGGCGGTGACCGGAGCTCCACAAGCAGTGATTCTGGAAGCAGCCTCAGTGACCTGAGCCATGAGAACAACTTCTTCAACAAACCTCTCTTGAGCTTAGGATTTGACCATCATCATCAAAGGCGCTCAAACATGTTCCAACCTCAAATCTACGGTCGAGATTTCAAGAGAAGCTCATCATCAATGGTTGGTCTTAAACGAAGCATTCGTGCTCCAAGAATGAGATGGACTTCTACTCTTCATGCTCACTTCGTCCATGCTGTTCAACTTCTTGGCGGCCATGAAAGAGCAACGCCTAAATCAGTGTTGGAGCTCATGAATGTGAAGGATCTAACCCTAGCTCATGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAATGCACTGATAAAGGATCACCAGGAGAAGGAAAGGTAGAGAAAGAGGCAGAGCAGAGGATAGAGGACAATAATAATAATGAAGAAGCTGATGAAGGAACTGACACAAATTCGCCAAACTCATCATCTGTGCAAAAGACCCAAAGGTTACTTTTTATTTATATATTTATTTTTGTAAAATTTTGCATTTAATCTCTTTTTGCCTTAGTTCTGTGTGAAATTTGATGAATATGACCCTCTCCTAGGGCTTATGTGAATGTACTTTTCCATCTCTCATTAAATTCGTTAAGGGTTGTTTTTGGTTTTAGTCTAATTAGAAATATAAGATATTTGAATTTTCTTTGTTAATTTGTATATGTACATTAATTGATGATAATATAGAAGTAGGTCCAAATACAACAATTTTGTCCAGCAATAGGAGTTATAAACAGATTTCTAAAATGTGTTTTATTATTAAAATTTGAACAGAGCTTCATGGTCATCGACAAAG - >AT5G42630.1
AATAAAAGTGTTGTTTCTGCAGAGCTCTCTCTCTCTCTCTCGTTCTCTTTCCACACATTCTTTGATCTCCACTATTTAAGTAGACAAGAATCATAAAGAAAATAGTGAGATGATGATGTTAGAGTCAAGAAACAGTATGAGAGCTTCAAACTCAGTCCCAGATCTGTCTCTTCAGATCAGTCTTCCTAACTATCACGCCGGAAAACCTCTTCACGGCGGTGACCGGAGCTCCACAAGCAGTGATTCTGGAAGCAGCCTCAGTGACCTGAGCCATGAGAACAACTTCTTCAACAAACCTCTCTTGAGCTTAGGATTTGACCATCATCATCAAAGGCGCTCAAACATGTTCCAACCTCAAATCTACGGTCGAGATTTCAAGAGAAGCTCATCATCAATGGTTGGTCTTAAACGAAGCATTCGTGCTCCAAGAATGAGATGGACTTCTACTCTTCATGCTCACTTCGTCCATGCTGTTCAACTTCTTGGCGGCCATGAAAGAGCAACGCCTAAATCAGTGTTGGAGCTCATGAATGTGAAGGATCTAACCCTAGCTCATGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAATGCACTGATAAAGGATCACCAGGAGAAGGAAAGGTAGAGAAAGAGGCAGAGCAGAGGATAGAGGACAATAATAATAATGAAGAAGCTGATGAAGGAACTGACACAAATTCGCCAAACTCATCATCTGTGCAAAAGACCCAAAGGTTACTTTTTATTTATATATTTATTTTTGTAAAATTTTGCATTTAATCTCTTTTTGCCTTAGTTCTGTGTGAAATTTGATGAATATGACCCTCTCCTAGGGCTTATGTGAATGTACTTTTCCATCTCTCATTAAATTCGTTAAGGGTTGTTTTTGGTTTTAGTCTAATTAGAAATATAAGATATTTGAATTTTCTTTGTTAATTTGTATATGTACATTAATTGATGATAATATAGAAGTAGGTCCAAATACAACAATTTTGTCCAGCAATAGGAGTTATAAACAGATTTCTAAAATGTGTTTTATTATTAAAATTTGAACAGAGCTTCATGGTCATCGACAAAG
CDS Sequence
Protein Sequence