Information report for AT5G42520
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
Functional Keywords
Literature and News
- The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3. DOI: 10.1046/j.1365-313x.2003.01767.x ; PMID: 12795701
- Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter. DOI: 10.1046/j.1365-313x.2003.01971.x ; PMID: 14731261
- Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis. DOI: 10.1111/j.1365-313X.2011.04562.x ; PMID: 21435046
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs. DOI: 10.1104/pp.15.00409 ; PMID: 26025051
- Role of BASIC PENTACYSTEINE transcription factors in a subset of cytokinin signaling responses. DOI: 10.1111/tpj.13962 ; PMID: 29763523
- Family Members Additively Repress the Ectopic Expression of BASIC PENTACYSTEINE3 to Prevent Disorders in Arabidopsis Circadian Vegetative Development. DOI: 10.3389/fpls.2022.919946 ; PMID: 35693178
- Analysis of basic pentacysteine6 transcription factor involved in abiotic stress response in Arabidopsis thaliana. DOI: 10.3389/fgene.2023.1097381 ; PMID: 37139231
- The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3. DOI: 10.1046/j.1365-313x.2003.01767.x ; PMID: 12795701
- BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK. DOI: 10.1105/tpc.104.030130 ; PMID: 15722463
Gene Resources
- UniProt: A0A178UIB6
- EMBL: CACRSJ010000110, LR881470, LUHQ01000005
- AlphaFoldDB: A0A178UIB6
- EnsemblPlants: AT5G42520.1
- Gramene: AT5G42520.1
- KEGG: ath:AT5G42520
- ExpressionAtlas: AT5G42520
- InterPro: IPR010409
- PANTHER: PTHR31421, PTHR31421:SF2
- SWISS-MODEL: A0A178UIB6
Sequences
cDNA Sequence
- >AT5G42520.1
CCATCTTCCTCTTCCCCGATCTGTTTCTTCCACAAAGATATTTTTCTTTATTCTCTCGCAGTTCAATTAGGGTTTCAATCTCTCTGCTCTGCTTGTCATCACCACCACCACCACCACCGTCGTCGTCTCTCTGTATCTCTCCGGCGGGTTCTCTCTCTACTTCCCCCGGAGGATTAAAAGATGGACCAGTCTTTTATTTTGATATTCCGTTAGCTTGTTCAGTTATTGTAGAAGCTGTACCGTCAAGACTTTTAATATCTCAAATGGATGATGGTGGGCATCGTGAGAATGGTCGGCATAAAGCAGCAGTTCAGGGCCAGTGGTTGATGCAGCATCAGCCGTCGATGAAACAAGTGATGTCGATAATAGCAGAGCGCGATGCAGCGATTCAGGAGAGAAATCTGGCGATATCAGAGAAAAAAGCAGCAGTAGCTGAAAGGGACATGGCGTTTCTTCAGAGGGACACCGCCATTGCTGAGCGCAACAATGCGATAATGGAGAGAGACAGTGCTCTTACAGCACTCCAATACCGTGAGAACTCTATGGTTACTGCTCCTGCTGCCAATATGTCAGCATGTCCACCAGGATGTCAAATATCACGTGGTGTAAAACACTTGCACCATCCGCACATGCATCATCATCATCAACAACATCACATACCTCAGTTGACTGAAAATGCATATGAAACCAGAGAGATGGAGCCAAATGATGGTCTCCCAACATCACCACCTGCCGGATCCACCTTGGAATCTGCCAAACCAAAACGTGGTAAAAGAGTGAACCCAAAGGCGACAACACAAACTGCTGCTAATAAGAGAGGGCCAAAAAATCAGAGGAAGGTTAAGAAAGAGAGCGAGGACGACTTAAACAAGATAATGTTTGTAAAGACGACCCATGACTACACAGACGAAGATTCAAGTAAGCATATCTTAATAGGATCAAAATCTGACTGGAAAAGTCAAGAAATGGTGGGGCTGAACCAAGTGGTTTACGACGAGACAACGATGCCACCACCTGTATGTTCATGTACAGGAGTTCTCAGACAGTGCTACAAATGGGGAAATGGAGGTTGGCAATCATCGTGTTGCACAACTACACTATCAATGTATCCTTTACCTGCACTGCCCAACAAAAGGCATGCTCGAGTTGGTGGACGGAAAATGAGCGGAAGCGCGTTCAACAAGCTTCTAAGCCGGCTTGCTGCAGAAGGGCATCATGATCTTTCAAACCCGGTCGATCTGAAGGACCATTGGGCAAAGCACGGTACAAACCGCTACATTACGATTAAATGATATGTGCATTTAGGTGTGAGTTGTTCTTACGACATTATCTGATTTTAAATCATGTGTACTAAATTCAAATAAACTCGAGAGGAAAAGAATTGTATGTGGAGCCAATGTTATGTTGTATTATATAATTCGAAAATTTTTAGT - >AT5G42520.2
CCATCTTCCTCTTCCCCGATCTGTTTCTTCCACAAAGATATTTTTCTTTATTCTCTCGCAGTTCAATTAGGGTTTCAATCTCTCTGCTCTGCTTGTCATCACCACCACCACCACCACCGTCGTCGTCTCTCTGTATCTCTCCGGCGGGTTCTCTCTCTACTTCCCCCGGAGGATTAAAAGATGGACCAGTCTTTTATTTTGATATTCCGTTAGCTTGTTCAGTTATTGTAGAAGCTGTACCGTCAAGACTTTTAATATCTCAAATGGATGATGGTGGGCATCGTGAGAATGGTCGGCATAAAGCAGCAGTTCAGGGCCAGTGGTTGATGCAGCATCAGCCGTCGATGAAACAAGTGATGTCGATAATAGCAGAGCGCGATGCAGCGATTCAGGAGAGAAATCTGGCGATATCAGAGAAAAAAGCAGCAGTAGCTGAAAGGGACATGGCGTTTCTTCAGAGGGACACCGCCATTGCTGAGCGCAACAATGCGATAATGGAGAGAGACAGTGCTCTTACAGCACTCCAATACCGTGAGAACTCTATGGTTACTGCTCCTGCTGCCAATATGTCAGCATGTCCACCAGGATGTCAAATATCACGTGGTGTAAAACACTTGCACCATCCGCACATGCATCATCATCATCAACAACATCACATACCTCAGTTGACTGAAAATGCATATGAAACCAGAGAGATGGAGCCAAATGATGGTCTCCCAACATCACCACCTGCCGGATCCACCTTGGAATCTGCCAAACCAAAACGTGGTAAAAGAGTGAACCCAAAGGCGACAACACAAACTGCTGCTAATAAGAGAGGGCCAAAAAATCAGAGGAAGGTTAAGAAAGAGAGCGAGGACGACTTAAACAAGATAATGTTTGTAAAGACGACCCATGACTACACAGACGAAGATTCAAGTAAGCATATCTTAATAGGATCAAAATCTGACTGGAAAAGTCAAGAAATGGTGGGGCTGAACCAAGTGGTTTACGACGAGACAACGATGCCACCACCTGTATGTTCATGTACAGGAGTTCTCAGACAGTGCTACAAATGGGGAAATGGAGGTTGGCAATCATCGTGTTGCACAACTACACTATCAATGTATCCTTTACCTGCACTGCCCAACAAAAGGCATGCTCGAGTTGGTGGACGGAAAATGAGCGGAAGCGCGTTCAACAAGCTTCTAAGCCGGCTTGCTGCAGAAGGGCATCATGATCTTTCAAACCCGGTCGATCTGAAGGACCATTGGGCAAAGCACGGTACAAACCGCTACATTACGATTAAATGATATGTGCATTTAGGTGTGAGTTGTTCTTACGACATTATCTGATTTTAAATCATGTGTACTAAATTCAAATAAACTCGAGAGGAAAAGAATTGTATGTGGAGCCAATGTTATGTTGTATTATATAATTCGAAAATTTTTAGT - >AT5G42520.3
CCATCTTCCTCTTCCCCGATCTGTTTCTTCCACAAAGATATTTTTCTTTATTCTCTCGCAGTTCAATTAGGGTTTCAATCTCTCTGCTCTGCTTGTCATCACCACCACCACCACCACCGTCGTCGTCTCTCTGTATCTCTCCGGCGGGTTCTCTCTCTACTTCCCCCGGAGGATTAAAAGATGGACCAGTCTTTTATTTTGATATTCCGTTAGCTTGTTCAGTTATTGTAGAAGCTGTACCGTCAAGACTTTTAATATCTCAAATGGATGATGGTGGGCATCGTGAGAATGGTCGGCATAAAGCAGCAGTTCAGGGCCAGTGGTTGATGCAGCATCAGCCGTCGATGAAACAAGTGATGTCGATAATAGCAGAGCGCGATGCAGCGATTCAGGAGAGAAATCTGGCGATATCAGAGAAAAAAGCAGCAGTAGCTGAAAGGGACATGGCGTTTCTTCAGAGGGACACCGCCATTGCTGAGCGCAACAATGCGATAATGGAGAGAGACAGTGCTCTTACAGCACTCCAATACCGTGAGAACTCTATGGTTACTGCTCCTGCTGCCAATATGTCAGCATGTCCACCAGGATGTCAAATATCACGTGGTGTAAAACACTTGCACCATCCGCACATGCATCATCATCATCAACAACATCACATACCTCAGTTGACTGAAAATGCATATGAAACCAGAGAGATGGAGCCAAATGATGGTCTCCCAACATCACCACCTGCCGGATCCACCTTGGAATCTGCCAAACCAAAACGTGGTAAAAGAGTGAACCCAAAGGCGACAACACAAACTGCTGCTAATAAGAGAGGGCCAAAAAATCAGAGGAAGGTTAAGAAAGAGAGCGAGGACGACTTAAACAAGATAATGTTTGTAAAGACGACCCATGACTACACAGACGAAGATTCAAGTAAGCATATCTTAATAGGATCAAAATCTGACTGGAAAAGTCAAGAAATGGTGGGGCTGAACCAAGTGGTTTACGACGAGACAACGATGCCACCACCTGTATGTTCATGTACAGGAGTTCTCAGACAGTGCTACAAATGGGGAAATGGAGGTTGGCAATCATCGTGTTGCACAACTACACTATCAATGTATCCTTTACCTGCACTGCCCAACAAAAGGCATGCTCGAGTTGGTGGACGGAAAATGAGCGGAAGCGCGTTCAACAAGCTTCTAAGCCGGCTTGCTGCAGAAGGGCATCATGATCTTTCAAACCCGGTCGATCTGAAGGACCATTGGGCAAAGCACGGTACAAACCGCTACATTACGATTAAATGATATGTGCATTTAGGTGTGAGTTGTTCTTACGACATTATCTGATTTTAAATCATGTGTACTAAATTCAAATAAACTCGAGAGGAAAAGAATTGTATGTGGAGCCAATGTTATGTTGTATTATATAATTCGAAAATTTTTAGT
CDS Sequence
Protein Sequence