Information report for AT5G42190
Gene Details
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Functional Descriptions
- PO:0000033 — fruit valve — valva de fruto (Spanish, exact), 果実の弁 (Japanese, exact)
- PO:0000223 — shoot axis cortex — cortex del eje del epiblasto (epiblastema) del tallo (Spanish, exact), portion of shoot axis cortex tissue (exact), シュート軸皮層 (Japanese, exact), branch cortex (narrow)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0000258 — root cortex — cortex de la raíz (Spanish, exact), portion of root cortex tissue (exact), 根皮層 (Japanese, exact)
- PO:0006036 — root epidermis — epidermis de la raíz (Spanish, exact), 根表皮 (Japanese, exact), epiblem (related), rhizodermis (related)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0020048 — microspore — microspora (Spanish, exact), 小胞子 (Japanese, exact), Poaceae microspore (narrow), Zea microspore (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000014 — rosette leaf — hoja en roseta (Spanish, exact), ロゼット葉 (Japanese, exact)
- PO:0009001 — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Functional Keywords
- fruit valve , shoot axis cortex , inflorescence meristem , root cortex , root epidermis , seed , vascular leaf , microspore , pollen , cauline leaf , rosette leaf , fruit , flower , flower , pollen , root , plant sperm cell
Literature and News
- Overexpression of Arabidopsis thaliana SKP1 homologues in yeast inactivates the Mig1 repressor by destabilising the F-box protein Grr1. DOI: 10.1007/pl00008682 ; PMID: 10778750
- The UNUSUAL FLORAL ORGANS gene of Arabidopsis thaliana is an F-box protein required for normal patterning and growth in the floral meristem. DOI: 10.1046/j.1365-313x.1999.00617.x ; PMID: 10607296
- Identification of an SCF ubiquitin-ligase complex required for auxin response in Arabidopsis thaliana. DOI: 10.1101/gad.13.13.1678 ; PMID: 10398681
- Cloning by pathway activation in yeast: identification of an Arabidopsis thaliana F-box protein that can turn on glucose repression. DOI: 10.1023/a:1014440531842 ; PMID: 12008900
- The SCF(COI1) ubiquitin-ligase complexes are required for jasmonate response in Arabidopsis. DOI: 10.1105/tpc.003368 ; PMID: 12172031
- Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. DOI: 10.1046/j.1365-313x.2003.01768.x ; PMID: 12795696
- Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis. DOI: 10.1104/pp.103.024703 ; PMID: 12970487
- The ARABIDOPSIS SKP1-LIKE1 (ASK1) protein acts predominately from leptotene to pachytene and represses homologous recombination in male meiosis. DOI: 10.1007/s00425-005-0154-3 ; PMID: 16283376
- Functional analysis of EID1, an F-box protein involved in phytochrome A-dependent light signal transduction. DOI: 10.1111/j.1365-313X.2005.02635.x ; PMID: 16412087
- An F-box gene, CPR30, functions as a negative regulator of the defense response in Arabidopsis. DOI: 10.1111/j.1365-313X.2009.03995.x ; PMID: 19682297
- Molecular evolution and selection patterns of plant F-box proteins with C-terminal kelch repeats. DOI: 10.1104/pp.110.166579 ; PMID: 21119043
- SKP1 is involved in abscisic acid signalling to regulate seed germination, stomatal opening and root growth in Arabidopsis thaliana. DOI: 10.1111/j.1365-3040.2011.02464.x ; PMID: 22074111
- Several components of SKP1/Cullin/F-box E3 ubiquitin ligase complex and associated factors play a role in Agrobacterium-mediated plant transformation. DOI: 10.1111/j.1469-8137.2012.04133.x ; PMID: 22486382
- A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. DOI: 10.1371/journal.pone.0050009 ; PMID: 23166809
- The SKP1-like gene family of Arabidopsis exhibits a high degree of differential gene expression and gene product interaction during development. DOI: 10.1371/journal.pone.0050984 ; PMID: 23226441
- Characterization of Arabidopsis Tubby-like proteins and redundant function of AtTLP3 and AtTLP9 in plant response to ABA and osmotic stress. DOI: 10.1007/s11103-014-0241-6 ; PMID: 25168737
- Distinct roles of FKF1, Gigantea, and Zeitlupe proteins in the regulation of Constans stability in Arabidopsis photoperiodic flowering. DOI: 10.1073/pnas.1415375111 ; PMID: 25422419
- The Arabidopsis F-box E3 ligase RIFP1 plays a negative role in abscisic acid signalling by facilitating ABA receptor RCAR3 degradation. DOI: 10.1111/pce.12639 ; PMID: 26386272
- NORE1/SAUL1 integrates temperature-dependent defense programs involving SGT1b and PAD4 pathways and leaf senescence in Arabidopsis. DOI: 10.1111/ppl.12434 ; PMID: 26910207
- Adaptive and degenerative evolution of the S-Phase Kinase-Associated Protein 1-Like family in Arabidopsis thaliana. DOI: 10.7717/peerj.6740 ; PMID: 30997292
- The intragenic suppressor mutation Leu59Phe compensates for the effect of detrimental mutations in the jasmonate receptor COI1. DOI: 10.1111/tpj.15464 ; PMID: 34396619
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178UBX6
- EMBL: CACSHJ010000096, LUHQ01000005
- AlphaFoldDB: A0A178UBX6
- EnsemblPlants: AT5G42190.1
- Gramene: AT5G42190.1
- KEGG: ath:AT5G42190
- Orthologous matrix: ANMMMCK
- ExpressionAtlas: AT5G42190
- InterPro: IPR001232, IPR011333, IPR016072
- PANTHER: PTHR11165
- SUPFAM: SSF54695, SSF81382
- Gene3D: 3.30.710.10
- OrthoDB: A0A178UBX6
- SWISS-MODEL: A0A178UBX6
- Conserved Domain Database: cd18322
Sequences
cDNA Sequence
- >AT5G42190.1
GTTGAATTAATTTTCAGGTGTTTTCCTTTGAAAGAAAAAAACAGAGAAAATGTTTTAAAATGAAAATTTATAGGTAAAAAAAGTCAATTGGGAATCGTTAGATCTCACTGGTTCAATGTGTGAGCCGGGCTTTAAAAACATTTTGATTTAACCCATACACACATCTCTCTGTTCCACGATTCTCTTCCTCAGCCTCCACGTCGTCTCTAAACTCAGCAAAAACCAATGTCGACGGTGAGAAAAATCACTCTTAAGAGTTCGGATGGCGAAAACTTCGAAATTGACGAAGCGGTGGCGCTAGAGTCACAAACCATCAAACATATGATTGAAGATGACTGTACCGATAATGGTATCCCTCTCCCTAATGTCACAAGCAAGATCCTTTCGAAGGTGATTGAGTACTGTAAGAGACATGTCGAAGCTGCTGAGAAATCCGAAACCACGGCCGATGCTGCTGCTGCTACTACTACCACCACCGTCGCGTCGGGTTCTAGTGATGAAGATCTCAAGACTTGGGATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGGCTGCTAACTACTTGAATATCAAGGGACTGTTGGACTTGACTTGCCAGACAGTGGCTGATATGATTAAAGGAAAAACCCCAGAAGAAATCCGTAAGACGTTCAATATCAAGAACGACTTCACGCCAGAGGAAGAAGAAGAGGTTCGCCGTGAGAATCAGTGGGCGTTTGAATGAAGAAAAATGAAGACCTAGGTTGCTGTCATGTCCTCGACCCATTTGTGTCTCCCTGTCTTATCTTCTTTCTTTGACTATATATCCATTCTCTTCTACGTGATGGTCCAGCTAAGACAGTGGGTCGGATGTTAATGTTATGTTATGTATGTCAAATTAAAGACTTAACTACGAAACATATTGAAGTTGTTGCTCAAAAGAGAGTGTTGGTCTTCTATTGTTTCGTCAATCATTTAGATAGGTTGTGAACACAAGTGATAAGATTTGTCTGCATGTTCTTAGAAAGAGAAAAGATCTTATTACTTGT
CDS Sequence
Protein Sequence