Information report for AT5G41700
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009072 — plant ovary — ovario vegetal (Spanish, exact), 子房 (Japanese, exact), Poaceae ovary (narrow), Zea ovary (narrow)
- PO:0009089 — endosperm — albumen (exact), endosperma (Spanish, exact), 内胚乳、胚乳 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
- root , stamen , plant ovary , endosperm , pollen
Literature and News
- UPL1 and 2, two 405 kDa ubiquitin-protein ligases from Arabidopsis thaliana related to the HECT-domain protein family. DOI: 10.1046/j.1365-313x.1999.00590.x ; PMID: 10571878
- Homologs of the essential ubiquitin conjugating enzymes UBC1, 4, and 5 in yeast are encoded by a multigene family in Arabidopsis thaliana. DOI: 10.1046/j.1365-313x.1993.03040545.x ; PMID: 8220461
- Biochemical evidence for ubiquitin ligase activity of the Arabidopsis COP1 interacting protein 8 (CIP8). DOI: 10.1046/j.1365-313x.2002.01298.x ; PMID: 12028569
- Protein degradation in signaling. DOI: 10.1016/s1369-5266(00)00100-x ; PMID: 11019805
- Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. DOI: 10.1104/pp.104.052423 ; PMID: 15644464
- Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. DOI: 10.1104/pp.105.067983 ; PMID: 16339806
- AtCHIP functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. DOI: 10.1111/j.1365-313X.2006.02730.x ; PMID: 16640601
- Upregulation of an Arabidopsis RING-H2 gene, XERICO, confers drought tolerance through increased abscisic acid biosynthesis. DOI: 10.1111/j.1365-313X.2006.02782.x ; PMID: 16792696
- A mutation in NLA, which encodes a RING-type ubiquitin ligase, disrupts the adaptability of Arabidopsis to nitrogen limitation. DOI: 10.1111/j.1365-313X.2007.03050.x ; PMID: 17355433
- ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. DOI: 10.1111/j.1365-313X.2008.03631.x ; PMID: 18643997
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Identification of novel proteins involved in plant cell-wall synthesis based on protein-protein interaction data. DOI: 10.1021/pr100249c ; PMID: 20687615
- Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids. DOI: 10.1111/j.1365-313X.2012.05021.x ; PMID: 22487254
- Flying saucer1 is a transmembrane RING E3 ubiquitin ligase that regulates the degree of pectin methylesterification in Arabidopsis seed mucilage. DOI: 10.1105/tpc.112.107888 ; PMID: 23482858
- PLANT U-BOX PROTEIN10 Regulates MYC2 Stability in Arabidopsis. DOI: 10.1105/tpc.15.00385 ; PMID: 26163577
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Wheat germ-based protein libraries for the functional characterisation of the Arabidopsis E2 ubiquitin conjugating enzymes and the RING-type E3 ubiquitin ligase enzymes. DOI: 10.1186/s12870-015-0660-9 ; PMID: 26556605
- Protein degradation in signaling. DOI: 10.1016/s1369-5266(00)00100-x ; PMID: 11019805
- Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. DOI: 10.1104/pp.105.067983 ; PMID: 16339806
Gene Resources
- UniProt: A0A178UE87
- EMBL: LR881470, LUHQ01000005
- AlphaFoldDB: A0A178UE87
- EnsemblPlants: AT5G41700.1, AT5G41700.2, AT5G41700.5
- Gramene: AT5G41700.1, AT5G41700.2, AT5G41700.5
- KEGG: ath:AT5G41700
- Orthologous matrix: VEACYLI
- ExpressionAtlas: AT5G41700
- InterPro: IPR000608, IPR016135, IPR023313
- PANTHER: PTHR24068
- SUPFAM: SSF54495
- PROSITE: PS00183, PS50127
- Gene3D: 3.10.110.10
- SWISS-MODEL: A0A178UE87
- Conserved Domain Database: cd23792
Sequences
cDNA Sequence
- >AT5G41700.1
TATTTCTTAAGCAGCCATTATTACTAAAATAAATCATAGTTTATCCAATTAAATTATTCGCTTCCGTTTCTTAAAGCATAAAAACCAAAACTTTCTCTTTCGTTTTGCTTTCTTCCAATCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTTTGGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACGAGGCTACTGCAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAACAAAGATTCGTATGCTTCAGCACCTGTTTATGTTTTCATGTCTGTTTCTTTCTTCTTCTTGTTTTAACTTTAATAAAAATGTCTAAAATATCAACTTTTTCGTCTGTACTATATATGTTTATGGGTTTTATTATCATCATCTTTATCTGAAATTTGAAGATGGAATTCTAAAGCTTGAAGGTTATTTGTTAAAGTTTATTTACTAGTGAGTGATGAGAAACATTGTGTTGTTGTTCATTTCATTTTTTCTTTGTCAGGAATATTCATTGACTTGTTTTCTTTCCCAATATTTTATTTTACC - >AT5G41700.4
TATTTCTTAAGCAGCCATTATTACTAAAATAAATCATAGTTTATCCAATTAAATTATTCGCTTCCGTTTCTTAAAGCATAAAAACCAAAACTTTCTCTTTCGTTTTGCTTTCTTCCAATCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTTTGGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACGAGGCTACTGCAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAACAAAGATTCGTATGCTTCAGCACCTGTTTATGTTTTCATGTCTGTTTCTTTCTTCTTCTTGTTTTAACTTTAATAAAAATGTCTAAAATATCAACTTTTTCGTCTGTACTATATATGTTTATGGGTTTTATTATCATCATCTTTATCTGAAATTTGAAGATGGAATTCTAAAGCTTGAAGGTTATTTGTTAAAGTTTATTTACTAGTGAGTGATGAGAAACATTGTGTTGTTGTTCATTTCATTTTTTCTTTGTCAGGAATATTCATTGACTTGTTTTCTTTCCCAATATTTTATTTTACC - >AT5G41700.2
TATTTCTTAAGCAGCCATTATTACTAAAATAAATCATAGTTTATCCAATTAAATTATTCGCTTCCGTTTCTTAAAGCATAAAAACCAAAACTTTCTCTTTCGTTTTGCTTTCTTCCAATCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTTTGGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACGAGGCTACTGCAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAACAAAGATTCGTATGCTTCAGCACCTGTTTATGTTTTCATGTCTGTTTCTTTCTTCTTCTTGTTTTAACTTTAATAAAAATGTCTAAAATATCAACTTTTTCGTCTGTACTATATATGTTTATGGGTTTTATTATCATCATCTTTATCTGAAATTTGAAGATGGAATTCTAAAGCTTGAAGGTTATTTGTTAAAGTTTATTTACTAGTGAGTGATGAGAAACATTGTGTTGTTGTTCATTTCATTTTTTCTTTGTCAGGAATATTCATTGACTTGTTTTCTTTCCCAATATTTTATTTTACC - >AT5G41700.5
TATTTCTTAAGCAGCCATTATTACTAAAATAAATCATAGTTTATCCAATTAAATTATTCGCTTCCGTTTCTTAAAGCATAAAAACCAAAACTTTCTCTTTCGTTTTGCTTTCTTCCAATCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTTTGGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACGAGGCTACTGCAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAACAAAGATTCGTATGCTTCAGCACCTGTTTATGTTTTCATGTCTGTTTCTTTCTTCTTCTTGTTTTAACTTTAATAAAAATGTCTAAAATATCAACTTTTTCGTCTGTACTATATATGTTTATGGGTTTTATTATCATCATCTTTATCTGAAATTTGAAGATGGAATTCTAAAGCTTGAAGGTTATTTGTTAAAGTTTATTTACTAGTGAGTGATGAGAAACATTGTGTTGTTGTTCATTTCATTTTTTCTTTGTCAGGAATATTCATTGACTTGTTTTCTTTCCCAATATTTTATTTTACC - >AT5G41700.3
TATTTCTTAAGCAGCCATTATTACTAAAATAAATCATAGTTTATCCAATTAAATTATTCGCTTCCGTTTCTTAAAGCATAAAAACCAAAACTTTCTCTTTCGTTTTGCTTTCTTCCAATCATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGGGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTTTGGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACGAGGCTACTGCAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAACAAAGATTCGTATGCTTCAGCACCTGTTTATGTTTTCATGTCTGTTTCTTTCTTCTTCTTGTTTTAACTTTAATAAAAATGTCTAAAATATCAACTTTTTCGTCTGTACTATATATGTTTATGGGTTTTATTATCATCATCTTTATCTGAAATTTGAAGATGGAATTCTAAAGCTTGAAGGTTATTTGTTAAAGTTTATTTACTAGTGAGTGATGAGAAACATTGTGTTGTTGTTCATTTCATTTTTTCTTTGTCAGGAATATTCATTGACTTGTTTTCTTTCCCAATATTTTATTTTACC
CDS Sequence
Protein Sequence