Information report for AT5G41340
Gene Details
|
|
Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Functional Keywords
Literature and News
- Members of two gene families encoding ubiquitin-conjugating enzymes, AtUBC1-3 and AtUBC4-6, from Arabidopsis thaliana are differentially expressed. DOI: 10.1007/BF00042223 ; PMID: 8790283
- Homologues of wheat ubiquitin-conjugating enzymes–TaUBC1 and TaUBC4 are encoded by small multigene families in Arabidopsis thaliana. DOI: 10.1007/BF00023561 ; PMID: 8155884
- Cloning of a 16-kDa ubiquitin carrier protein from wheat and Arabidopsis thaliana. Identification of functional domains by in vitro mutagenesis. DOI: S0021-9258(18)54365-9 ; PMID: 1660887
- Protein degradation in signaling. DOI: 10.1016/s1369-5266(00)00100-x ; PMID: 11019805
- Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. DOI: 10.1104/pp.105.067983 ; PMID: 16339806
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Effect of Arabidopsis COP10 ubiquitin E2 enhancement activity across E2 families and functional conservation among its canonical homologues. DOI: 10.1042/BJ20081943 ; PMID: 19061479
- Biochemical function of typical and variant Arabidopsis thaliana U-box E3 ubiquitin-protein ligases. DOI: 10.1042/BJ20071568 ; PMID: 18393940
- Wheat germ-based protein libraries for the functional characterisation of the Arabidopsis E2 ubiquitin conjugating enzymes and the RING-type E3 ubiquitin ligase enzymes. DOI: 10.1186/s12870-015-0660-9 ; PMID: 26556605
- Arabidopsis Ubiquitin-Conjugating Enzymes UBC4, UBC5, and UBC6 Have Major Functions in Sugar Metabolism and Leaf Senescence. DOI: 10.3390/ijms231911143 ; PMID: 36232444
- Protein degradation in signaling. DOI: 10.1016/s1369-5266(00)00100-x ; PMID: 11019805
- Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. DOI: 10.1104/pp.105.067983 ; PMID: 16339806
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
Gene Resources
- UniProt: A0A654G6Z0
- EMBL: CACRSJ010000110
- AlphaFoldDB: A0A654G6Z0
- EnsemblPlants: AT5G41340.1
- Gramene: AT5G41340.1
- KEGG: ath:AT5G41340
- ExpressionAtlas: AT5G41340
- InterPro: IPR000608, IPR016135, IPR023313
- PANTHER: PTHR24068
- SUPFAM: SSF54495
- PROSITE: PS00183, PS50127
- Gene3D: 3.10.110.10
- SWISS-MODEL: A0A654G6Z0
- Conserved Domain Database: cd23797
Sequences
cDNA Sequence
- >AT5G41340.1
GAGATTCTTATTTCTAACAAAGGATATATATTTAGAGATACGATCTCCTTCGGTGGTTCACTCCCATCATCGATGTACGTGAAAATATATAAATAAAAAATCAATAAACGAAAATCTTTCCTTTTTCTCTCACACATTTTTCTTCATCTCCACTCGAATCCGGAAGAAGAACAAAAACCAAAAAAAAAACCCAGAAAATCAGAGAAACATAAGCGAACCGACAGAGAAAAAAAATGTCTTCGCCAAGCAAACGCAGAGAAATGGATATGATGAAGCTGATGATGAGCGATTATAAAGTGGAAACGATCAACGATGGCATGCAAGAATTCTATGTTGAATTCAATGGTCCCAAAGACAGTCTCTATCAAGGAGGTGTGTGGAAGATAAGAGTTGAGCTTCCAGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACTAAAATTTATCATCCTAATGTTGATGAACTGTCGGGTTCTGTTTGTTTAGATGTGATTAACCAAACTTGGAGTCCTATGTTCGACCTTGTGAATGTGTTTGAGACATTTCTTCCTCAGCTTCTTCTGTATCCAAACCCATCAGATCCATTGAATGGAGAAGCTGCTGCGTTAATGATGCGTGATCGTCCTGCTTATGAGCAACGAGTTAAAGAATACTGTGAGAAGTATGCAAAGCCAGGGGAAGGTTCAGAAGATAAGTCTAGCGATGAAGAACTAAGTGAAGAGGAATACGGCTCAGATAATGAGGATGATGATGATGATGATGTTGCAATTGCTGGCAAACCAGATCCTTGAACCAGCTTTGGTAGGGGACTTGTTTTATTGTATATGATCATGAATTATCTCTGCTTATAACTCAACTGTGAAATCTATTTCTCCCTTTGTGCTTTGTTCACCTGTTTAATTTATCGGACCGGACGTTTGTGTACATTATTAGACCGAACCGAATTGTTAGTCTTTTCAATTTCAAATAAGTCTCTCTTACCGGTTTATACCGGTTATTGATTCGGTAATTTCTTTTCTTGAAG - >AT5G41340.2
GAGATTCTTATTTCTAACAAAGGATATATATTTAGAGATACGATCTCCTTCGGTGGTTCACTCCCATCATCGATGTACGTGAAAATATATAAATAAAAAATCAATAAACGAAAATCTTTCCTTTTTCTCTCACACATTTTTCTTCATCTCCACTCGAATCCGGAAGAAGAACAAAAACCAAAAAAAAAACCCAGAAAATCAGAGAAACATAAGCGAACCGACAGAGAAAAAAAATGTCTTCGCCAAGCAAACGCAGAGAAATGGATATGATGAAGCTGATGATGAGCGATTATAAAGTGGAAACGATCAACGATGGCATGCAAGAATTCTATGTTGAATTCAATGGTCCCAAAGACAGTCTCTATCAAGGAGGTGTGTGGAAGATAAGAGTTGAGCTTCCAGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACTAAAATTTATCATCCTAATGTTGATGAACTGTCGGGTTCTGTTTGTTTAGATGTGATTAACCAAACTTGGAGTCCTATGTTCGACCTTGTGAATGTGTTTGAGACATTTCTTCCTCAGCTTCTTCTGTATCCAAACCCATCAGATCCATTGAATGGAGAAGCTGCTGCGTTAATGATGCGTGATCGTCCTGCTTATGAGCAACGAGTTAAAGAATACTGTGAGAAGTATGCAAAGCCAGGGGAAGGTTCAGAAGATAAGTCTAGCGATGAAGAACTAAGTGAAGAGGAATACGGCTCAGATAATGAGGATGATGATGATGATGATGTTGCAATTGCTGGCAAACCAGATCCTTGAACCAGCTTTGGTAGGGGACTTGTTTTATTGTATATGATCATGAATTATCTCTGCTTATAACTCAACTGTGAAATCTATTTCTCCCTTTGTGCTTTGTTCACCTGTTTAATTTATCGGACCGGACGTTTGTGTACATTATTAGACCGAACCGAATTGTTAGTCTTTTCAATTTCAAATAAGTCTCTCTTACCGGTTTATACCGGTTATTGATTCGGTAATTTCTTTTCTTGAAG
CDS Sequence
Protein Sequence