Information report for AT5G41080
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0020003 — plant ovule — óvulo vegetal (Spanish, exact), 胚珠 (Japanese, exact), Poaceae ovule (narrow), Zea ovule (narrow)
Functional Keywords
Literature and News
- The sfr6 mutant of Arabidopsis is defective in transcriptional activation via CBF/DREB1 and DREB2 and shows sensitivity to osmotic stress. DOI: 10.1046/j.1365-313x.2003.01734.x ; PMID: 12753580
- A two-step strategy for detecting differential gene expression in cDNA microarray data. DOI: 10.1007/s00294-004-0551-3 ; PMID: 15688252
- Arabidopsis NRP1 and NRP2 encode histone chaperones and are required for maintaining postembryonic root growth. DOI: 10.1105/tpc.106.046490 ; PMID: 17122067
- Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2006.02979.x ; PMID: 17217462
- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana. DOI: 10.1128/MCB.01607-07 ; PMID: 18070919
- Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. DOI: 10.1104/pp.107.115592 ; PMID: 18305208
- Articulation of three core metabolic processes in Arabidopsis: fatty acid biosynthesis, leucine catabolism and starch metabolism. DOI: 10.1186/1471-2229-8-76 ; PMID: 18616834
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants. DOI: 10.1186/1471-2229-9-29 ; PMID: 19291320
- Characterization of the Arabidopsis glycerophosphodiester phosphodiesterase (GDPD) family reveals a role of the plastid-localized AtGDPD1 in maintaining cellular phosphate homeostasis under phosphate starvation. DOI: 10.1111/j.1365-313X.2011.04538.x ; PMID: 21323773
- Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening. DOI: 10.1111/ppl.12013 ; PMID: 23517122
- Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. DOI: 10.1105/tpc.19.00463 ; PMID: 31519798
Gene Resources
- UniProt: F4JWX3
- EMBL: CP002688
- AlphaFoldDB: F4JWX3
- EnsemblPlants: AT5G41080.2
- Gramene: AT5G41080.2
- ExpressionAtlas: AT5G41080
- InterPro: IPR017946, IPR030395, IPR051578
- PANTHER: PTHR22958, PTHR22958:SF29
- SUPFAM: SSF51695
- PROSITE: PS51704
- Gene3D: 3.20.20.190
- OrthoDB: F4JWX3
- SWISS-MODEL: F4JWX3
- Conserved Domain Database: cd08605
Sequences
cDNA Sequence
- >AT5G41080.2
TTCGAAATCCCTAATCTACTCTCTCTTCTCTATATCTCTACTCTTGAGAAATGGCTCTTAGAACTGTGCTCGTCTCCGACGTCCCTAGCCTCCCGGATTCTGTCTACGGTTTATCCGAAGGTATTTCTCTCTCTGTCTCTCTCTCTCTGTTTCGTCGGCTATTGAGCTGTTTTCGTTTCTGATGATCTTGTCTTTGATTACAGGTTTAGAGTTGAGCAAACCGACGTCGTTTAGGTTACCGGGGTTTTCGGTGATTGGACATAGAGGAATCGGTATGAATGTGTTGCAATCGTCTGATCGGAGAGCGAGAGGTGTTAAAGAAAACTCGATTCTTTCATTCAATTCCGCCGCTAAGTATCCGATTGATTTCATTGAGTTCGATGTTCAGGTGACAAAAGATGATTGCCCTGTCATTTTCCATGATGATTTCATCTACTCTGAAGAAAATGGTATTGTTAATGAGAGTAGAGTGACGGATCTGAGTCTGTCTGAGTTTCTCCTTTATGGACCTCAGAAGGAAACTGAGAAAATAGGGAAGACACTGATGAGGAAATCTAAAGAAGGGAAGGTTTTGAAATGGGACGTTGATTTGGATGATTCTCTTTGTACGTTGCAAGAAGCTTTTGAACAAGTTGAACAAACTCTTGGGTTCAATATCGAGTTGAAATTTGATGATCAGACCGTCTATGAACGAGAGTTTCTTGTCCATATCCTGAGATCAGTACTACAGGTGGTCTCTAATTATGCTAAAGACAGACCAGTAATCTTCTCAAGTTTCCAACCAGATGCAGCTAAGCTTGTTAGGGAACTGCAGAGCACTTACCCTGTTTTCTTTCTGACTGATGCGGGAAACGAGATTCACAATGACGAGAGAAGAAACTCGCTCGAAGAAGCCATTCAAGTTTGCTTGGAAGGAGGTCTTCAAGGTATTGTTTCAGAGGTAAAAGGAGTGTTCAGGAACCCAGCAGCCATTAGCAAGATCAAAGAATCTAACCTCTCTCTCCTCACATACGGCAAACTCAACAATGTCGGAGAGGCAGTGTACATGCAATATGTGATGGGGATCGATGGAGTGATTGTAGATTTTGTTGAGGAGATTATAGAGTCCACGACACGCATGATGATAAGACCACCACCATCATCATCACCATTACCATCACCTTCCAAGGATGATGATGTTGCCATTACAAGACCTGAGTTTTCACAGAAGGAGATTTCTTTTCTTCTCAAGCTTCTCTCTCAGTTGATACAACATTGATATCTCTGTTTTTTCGTTTTCTTTTATCCCAAGTTTCTTTTTAGGGTTTGATTTTCTTATTGATTTAATTATTATTCTGGGTGTATTACCCAATAGTTGGAATTGTAAATAATTATAAATTTATTTCTTTTTACAAGGATTAACTTTCTC - >AT5G41080.1
TTCGAAATCCCTAATCTACTCTCTCTTCTCTATATCTCTACTCTTGAGAAATGGCTCTTAGAACTGTGCTCGTCTCCGACGTCCCTAGCCTCCCGGATTCTGTCTACGGTTTATCCGAAGGTATTTCTCTCTCTGTCTCTCTCTCTCTGTTTCGTCGGCTATTGAGCTGTTTTCGTTTCTGATGATCTTGTCTTTGATTACAGGTTTAGAGTTGAGCAAACCGACGTCGTTTAGGTTACCGGGGTTTTCGGTGATTGGACATAGAGGAATCGGTATGAATGTGTTGCAATCGTCTGATCGGAGAGCGAGAGGTGTTAAAGAAAACTCGATTCTTTCATTCAATTCCGCCGCTAAGTATCCGATTGATTTCATTGAGTTCGATGTTCAGGTGACAAAAGATGATTGCCCTGTCATTTTCCATGATGATTTCATCTACTCTGAAGAAAATGGTATTGTTAATGAGAGTAGAGTGACGGATCTGAGTCTGTCTGAGTTTCTCCTTTATGGACCTCAGAAGGAAACTGAGAAAATAGGGAAGACACTGATGAGGAAATCTAAAGAAGGGAAGGTTTTGAAATGGGACGTTGATTTGGATGATTCTCTTTGTACGTTGCAAGAAGCTTTTGAACAAGTTGAACAAACTCTTGGGTTCAATATCGAGTTGAAATTTGATGATCAGACCGTCTATGAACGAGAGTTTCTTGTCCATATCCTGAGATCAGTACTACAGGTGGTCTCTAATTATGCTAAAGACAGACCAGTAATCTTCTCAAGTTTCCAACCAGATGCAGCTAAGCTTGTTAGGGAACTGCAGAGCACTTACCCTGTTTTCTTTCTGACTGATGCGGGAAACGAGATTCACAATGACGAGAGAAGAAACTCGCTCGAAGAAGCCATTCAAGTTTGCTTGGAAGGAGGTCTTCAAGGTATTGTTTCAGAGGTAAAAGGAGTGTTCAGGAACCCAGCAGCCATTAGCAAGATCAAAGAATCTAACCTCTCTCTCCTCACATACGGCAAACTCAACAATGTCGGAGAGGCAGTGTACATGCAATATGTGATGGGGATCGATGGAGTGATTGTAGATTTTGTTGAGGAGATTATAGAGTCCACGACACGCATGATGATAAGACCACCACCATCATCATCACCATTACCATCACCTTCCAAGGATGATGATGTTGCCATTACAAGACCTGAGTTTTCACAGAAGGAGATTTCTTTTCTTCTCAAGCTTCTCTCTCAGTTGATACAACATTGATATCTCTGTTTTTTCGTTTTCTTTTATCCCAAGTTTCTTTTTAGGGTTTGATTTTCTTATTGATTTAATTATTATTCTGGGTGTATTACCCAATAGTTGGAATTGTAAATAATTATAAATTTATTTCTTTTTACAAGGATTAACTTTCTC
CDS Sequence
Protein Sequence