Information report for AT5G40490
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0048578 — acts upstream of or within — positive regulation of long-day photoperiodism, flowering
- GO:0048576 — acts upstream of or within — positive regulation of short-day photoperiodism, flowering
- GO:0003729 — enables — mRNA binding
Functional Keywords
Literature and News
- Defining the RNA-binding glycine-rich (RBG) gene superfamily: new insights into nomenclature, phylogeny, and evolutionary trends obtained by genome-wide comparative analysis of Arabidopsis, Chinese cabbage, rice and maize genomes. DOI: 10.1007/s00438-015-1080-0 ; PMID: 26123085
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
Gene Resources
- UniProt: Q9FM47
- EMBL: AB009052, AY136466, CP002688
- AlphaFoldDB: Q9FM47
- EnsemblPlants: AT5G40490.1
- Gramene: AT5G40490.1
- Orthologous matrix: PRVMESQ
- ExpressionAtlas: AT5G40490
- InterPro: IPR000504, IPR012677, IPR035979
- PANTHER: PTHR48033, PTHR48033:SF5
- SUPFAM: SSF54928
- PROSITE: PS50102
- Gene3D: 3.30.70.330
- SWISS-MODEL: Q9FM47
Sequences
cDNA Sequence
- >AT5G40490.1
TGTTTCTAAATCAAAGACACAACACAAGTGCTACGCGAAGTACAATAAGTGTCGCTCCTTTCTCTTCTCCAAGGGTTTTAGGGCTTTTAGGCGGCTGCCGCTTCTTTTTCATCTTCTTCTTCGTTCTCCGAAGGTTTAGGGTTTCGATTTTCCCATCATGGATCCTTATGGAACGGAAACAGTTATCGAAGACGAAATCCACGATCCTAAACCATCCGAAGATATTGAAGACGATGACGACAAATCTCAGCCTCACTCTGGTGGCGGCGTCGATAGTGCTGGAAAGATATTTGTTGGAGGTTTAGCCAGGGAGACAACTTCAGCTGAATTCCTCAAGCATTTTGGGAAATATGGAGAGATCACTGATTCTGTGATTATGAAGGATAGGAAAACTGGACAGCCTCGGGGATTTGGGTTTGTCACATATGCTGATTCCTCTGTGGTCGACAAAGTTATCCAAGACAATCACATTATAATTGGCAAGCAGGTTGAAATTAAGCGGACGATACCAAGAGGATCCATGAGCTCTAACGATTTCAAAACCAAGAAGATATTTGTTGGTGGAATTCCTTCATCTGTGGATGATGATGAATTCAAGGAGTTCTTTATGCAATTTGGAGAGCTGAAGGAACATCAGATTATGCGTGATCACTCAACTGGAAGATCACGTGGCTTTGGGTTTGTTACATATGAAAGTGAAGATATGGTTGATCATCTCTTGGCGAAAGGGAACAGAATTGAGCTTTCAGGGACTCAGGTAGAGATAAAGAAGGCAGAGCCTAAAAAACCAAACTCGGTTACAACCCCATCGAAGCGGTTCGGTGACTCTCGCTCTAACTTTGGTGGAGGTTATGGAGATGGTTATGGTGGCGGACACGGTGGAGGATATGGTGGTCCAGGTGGTCCTTACAAGTCAGGTGGCGGTTATGGAGGTGGCCGGTCTGGTGGTTATGGAGGGTACGGAGGAGAATTCGGTGGGTATGGCGGTGGTGGATATGGTGGTGGTGTGGGACCTTATAGAGGAGAACCAGCTCTTGGATATTCTGGTCGTTATGGAGGAGGAGGCGGTGGTTACAATAGAGGTGGATACAGTATGGGAGGGGGCGGTGGGTACGGTGGTGGACCAGGTGATATGTATGGTGGGTCATACGGTGAACCAGGAGGTGGTTATGGTGGACCTAGTGGCAGTTATGGAGGCGGGTATGGTAGTAGCGGAATAGGTGGGTATGGTGGTGGAATGGGTGGTGCTGGTGGCGGAGGCTATAGAGGAGGTGGTGGCTATGATATGGGTGGAGTTGGAGGGGGAGGCGCAGGAGGATATGGTGCTGGTGGTGGCGGAAACGGTGGAGGATCATTTTATGGAGGAGGAGGAGGTAGAGGTGGATATGGAGGCGGGGGCAGCGGACGGTACCATCCTTATGGAAGGTAGAGAGTTCGATGAAAGCTTGAATCTTCTTCTTACTTGTTGTGTCATGCTTAGCATCATGTATGGTTATCAAGATTGATAGCTAGTCATTGTATTTTGAGAGATGAGGCTTTTAGGGCTTTGATTCCCCTGAGTAGTTTAAATCAATACATTTTTTAGATTATAATTATCTCGGCGTAACAATGCCAGATTATTTTTTACTCTCATGTGACATCTTTAGAGTTAGCTTGTAGCAACGCTTTTGAGGTTTTGGCTCAAATCTTATTAGAAGAAGACTCTTGTTTGTACCATTGCATATTTTTCATCATAAGCCTCTGTATGTGTCCGAAGGTTTGAT - >AT5G40490.2
TGTTTCTAAATCAAAGACACAACACAAGTGCTACGCGAAGTACAATAAGTGTCGCTCCTTTCTCTTCTCCAAGGGTTTTAGGGCTTTTAGGCGGCTGCCGCTTCTTTTTCATCTTCTTCTTCGTTCTCCGAAGGTTTAGGGTTTCGATTTTCCCATCATGGATCCTTATGGAACGGAAACAGTTATCGAAGACGAAATCCACGATCCTAAACCATCCGAAGATATTGAAGACGATGACGACAAATCTCAGCCTCACTCTGGTGGCGGCGTCGATAGTGCTGGAAAGATATTTGTTGGAGGTTTAGCCAGGGAGACAACTTCAGCTGAATTCCTCAAGCATTTTGGGAAATATGGAGAGATCACTGATTCTGTGATTATGAAGGATAGGAAAACTGGACAGCCTCGGGGATTTGGGTTTGTCACATATGCTGATTCCTCTGTGGTCGACAAAGTTATCCAAGACAATCACATTATAATTGGCAAGCAGGTTGAAATTAAGCGGACGATACCAAGAGGATCCATGAGCTCTAACGATTTCAAAACCAAGAAGATATTTGTTGGTGGAATTCCTTCATCTGTGGATGATGATGAATTCAAGGAGTTCTTTATGCAATTTGGAGAGCTGAAGGAACATCAGATTATGCGTGATCACTCAACTGGAAGATCACGTGGCTTTGGGTTTGTTACATATGAAAGTGAAGATATGGTTGATCATCTCTTGGCGAAAGGGAACAGAATTGAGCTTTCAGGGACTCAGGTAGAGATAAAGAAGGCAGAGCCTAAAAAACCAAACTCGGTTACAACCCCATCGAAGCGGTTCGGTGACTCTCGCTCTAACTTTGGTGGAGGTTATGGAGATGGTTATGGTGGCGGACACGGTGGAGGATATGGTGGTCCAGGTGGTCCTTACAAGTCAGGTGGCGGTTATGGAGGTGGCCGGTCTGGTGGTTATGGAGGGTACGGAGGAGAATTCGGTGGGTATGGCGGTGGTGGATATGGTGGTGGTGTGGGACCTTATAGAGGAGAACCAGCTCTTGGATATTCTGGTCGTTATGGAGGAGGAGGCGGTGGTTACAATAGAGGTGGATACAGTATGGGAGGGGGCGGTGGGTACGGTGGTGGACCAGGTGATATGTATGGTGGGTCATACGGTGAACCAGGAGGTGGTTATGGTGGACCTAGTGGCAGTTATGGAGGCGGGTATGGTAGTAGCGGAATAGGTGGGTATGGTGGTGGAATGGGTGGTGCTGGTGGCGGAGGCTATAGAGGAGGTGGTGGCTATGATATGGGTGGAGTTGGAGGGGGAGGCGCAGGAGGATATGGTGCTGGTGGTGGCGGAAACGGTGGAGGATCATTTTATGGAGGAGGAGGAGGTAGAGGTGGATATGGAGGCGGGGGCAGCGGACGGTACCATCCTTATGGAAGGTAGAGAGTTCGATGAAAGCTTGAATCTTCTTCTTACTTGTTGTGTCATGCTTAGCATCATGTATGGTTATCAAGATTGATAGCTAGTCATTGTATTTTGAGAGATGAGGCTTTTAGGGCTTTGATTCCCCTGAGTAGTTTAAATCAATACATTTTTTAGATTATAATTATCTCGGCGTAACAATGCCAGATTATTTTTTACTCTCATGTGACATCTTTAGAGTTAGCTTGTAGCAACGCTTTTGAGGTTTTGGCTCAAATCTTATTAGAAGAAGACTCTTGTTTGTACCATTGCATATTTTTCATCATAAGCCTCTGTATGTGTCCGAAGGTTTGAT
CDS Sequence
Protein Sequence