Gene Details:
- Gene ID: AT5G40490
- Gene Symbol: HLP1, RBGD5
- Gene Name: RNA-binding glycine-rich protein D5
- Description: RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
- TAIR Accession: locus:2168848
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Gene Ontology:
- GO:0048578 — acts upstream of or within — positive regulation of long-day photoperiodism, flowering
- GO:0048576 — acts upstream of or within — positive regulation of short-day photoperiodism, flowering
- GO:0003729 — enables — mRNA binding
Function-related keywords:
Literature:
- Defining the RNA-binding glycine-rich (RBG) gene superfamily: new insights into nomenclature, phylogeny, and evolutionary trends obtained by genome-wide comparative analysis of Arabidopsis, Chinese cabbage, rice and maize genomes. DOI: 10.1007/s00438-015-1080-0 ; PMID: 26123085
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
Sequences:
cDNA Sequence
- >AT5G40490.1
TGTTTCTAAATCAAAGACACAACACAAGTGCTACGCGAAGTACAATAAGTGTCGCTCCTTTCTCTTCTCCAAGGGTTTTAGGGCTTTTAGGCGGCTGCCGCTTCTTTTTCATCTTCTTCTTCGTTCTCCGAAGGTTTAGGGTTTCGATTTTCCCATCATGGATCCTTATGGAACGGAAACAGTTATCGAAGACGAAATCCACGATCCTAAACCATCCGAAGATATTGAAGACGATGACGACAAATCTCAGCCTCACTCTGGTGGCGGCGTCGATAGTGCTGGAAAGATATTTGTTGGAGGTTTAGCCAGGGAGACAACTTCAGCTGAATTCCTCAAGCATTTTGGGAAATATGGAGAGATCACTGATTCTGTGATTATGAAGGATAGGAAAACTGGACAGCCTCGGGGATTTGGGTTTGTCACATATGCTGATTCCTCTGTGGTCGACAAAGTTATCCAAGACAATCACATTATAATTGGCAAGCAGGTTGAAATTAAGCGGACGATACCAAGAGGATCCATGAGCTCTAACGATTTCAAAACCAAGAAGATATTTGTTGGTGGAATTCCTTCATCTGTGGATGATGATGAATTCAAGGAGTTCTTTATGCAATTTGGAGAGCTGAAGGAACATCAGATTATGCGTGATCACTCAACTGGAAGATCACGTGGCTTTGGGTTTGTTACATATGAAAGTGAAGATATGGTTGATCATCTCTTGGCGAAAGGGAACAGAATTGAGCTTTCAGGGACTCAGGTAGAGATAAAGAAGGCAGAGCCTAAAAAACCAAACTCGGTTACAACCCCATCGAAGCGGTTCGGTGACTCTCGCTCTAACTTTGGTGGAGGTTATGGAGATGGTTATGGTGGCGGACACGGTGGAGGATATGGTGGTCCAGGTGGTCCTTACAAGTCAGGTGGCGGTTATGGAGGTGGCCGGTCTGGTGGTTATGGAGGGTACGGAGGAGAATTCGGTGGGTATGGCGGTGGTGGATATGGTGGTGGTGTGGGACCTTATAGAGGAGAACCAGCTCTTGGATATTCTGGTCGTTATGGAGGAGGAGGCGGTGGTTACAATAGAGGTGGATACAGTATGGGAGGGGGCGGTGGGTACGGTGGTGGACCAGGTGATATGTATGGTGGGTCATACGGTGAACCAGGAGGTGGTTATGGTGGACCTAGTGGCAGTTATGGAGGCGGGTATGGTAGTAGCGGAATAGGTGGGTATGGTGGTGGAATGGGTGGTGCTGGTGGCGGAGGCTATAGAGGAGGTGGTGGCTATGATATGGGTGGAGTTGGAGGGGGAGGCGCAGGAGGATATGGTGCTGGTGGTGGCGGAAACGGTGGAGGATCATTTTATGGAGGAGGAGGAGGTAGAGGTGGATATGGAGGCGGGGGCAGCGGACGGTACCATCCTTATGGAAGGTAGAGAGTTCGATGAAAGCTTGAATCTTCTTCTTACTTGTTGTGTCATGCTTAGCATCATGTATGGTTATCAAGATTGATAGCTAGTCATTGTATTTTGAGAGATGAGGCTTTTAGGGCTTTGATTCCCCTGAGTAGTTTAAATCAATACATTTTTTAGATTATAATTATCTCGGCGTAACAATGCCAGATTATTTTTTACTCTCATGTGACATCTTTAGAGTTAGCTTGTAGCAACGCTTTTGAGGTTTTGGCTCAAATCTTATTAGAAGAAGACTCTTGTTTGTACCATTGCATATTTTTCATCATAAGCCTCTGTATGTGTCCGAAGGTTTGAT - >AT5G40490.2
TGTTTCTAAATCAAAGACACAACACAAGTGCTACGCGAAGTACAATAAGTGTCGCTCCTTTCTCTTCTCCAAGGGTTTTAGGGCTTTTAGGCGGCTGCCGCTTCTTTTTCATCTTCTTCTTCGTTCTCCGAAGGTTTAGGGTTTCGATTTTCCCATCATGGATCCTTATGGAACGGAAACAGTTATCGAAGACGAAATCCACGATCCTAAACCATCCGAAGATATTGAAGACGATGACGACAAATCTCAGCCTCACTCTGGTGGCGGCGTCGATAGTGCTGGAAAGATATTTGTTGGAGGTTTAGCCAGGGAGACAACTTCAGCTGAATTCCTCAAGCATTTTGGGAAATATGGAGAGATCACTGATTCTGTGATTATGAAGGATAGGAAAACTGGACAGCCTCGGGGATTTGGGTTTGTCACATATGCTGATTCCTCTGTGGTCGACAAAGTTATCCAAGACAATCACATTATAATTGGCAAGCAGGTTGAAATTAAGCGGACGATACCAAGAGGATCCATGAGCTCTAACGATTTCAAAACCAAGAAGATATTTGTTGGTGGAATTCCTTCATCTGTGGATGATGATGAATTCAAGGAGTTCTTTATGCAATTTGGAGAGCTGAAGGAACATCAGATTATGCGTGATCACTCAACTGGAAGATCACGTGGCTTTGGGTTTGTTACATATGAAAGTGAAGATATGGTTGATCATCTCTTGGCGAAAGGGAACAGAATTGAGCTTTCAGGGACTCAGGTAGAGATAAAGAAGGCAGAGCCTAAAAAACCAAACTCGGTTACAACCCCATCGAAGCGGTTCGGTGACTCTCGCTCTAACTTTGGTGGAGGTTATGGAGATGGTTATGGTGGCGGACACGGTGGAGGATATGGTGGTCCAGGTGGTCCTTACAAGTCAGGTGGCGGTTATGGAGGTGGCCGGTCTGGTGGTTATGGAGGGTACGGAGGAGAATTCGGTGGGTATGGCGGTGGTGGATATGGTGGTGGTGTGGGACCTTATAGAGGAGAACCAGCTCTTGGATATTCTGGTCGTTATGGAGGAGGAGGCGGTGGTTACAATAGAGGTGGATACAGTATGGGAGGGGGCGGTGGGTACGGTGGTGGACCAGGTGATATGTATGGTGGGTCATACGGTGAACCAGGAGGTGGTTATGGTGGACCTAGTGGCAGTTATGGAGGCGGGTATGGTAGTAGCGGAATAGGTGGGTATGGTGGTGGAATGGGTGGTGCTGGTGGCGGAGGCTATAGAGGAGGTGGTGGCTATGATATGGGTGGAGTTGGAGGGGGAGGCGCAGGAGGATATGGTGCTGGTGGTGGCGGAAACGGTGGAGGATCATTTTATGGAGGAGGAGGAGGTAGAGGTGGATATGGAGGCGGGGGCAGCGGACGGTACCATCCTTATGGAAGGTAGAGAGTTCGATGAAAGCTTGAATCTTCTTCTTACTTGTTGTGTCATGCTTAGCATCATGTATGGTTATCAAGATTGATAGCTAGTCATTGTATTTTGAGAGATGAGGCTTTTAGGGCTTTGATTCCCCTGAGTAGTTTAAATCAATACATTTTTTAGATTATAATTATCTCGGCGTAACAATGCCAGATTATTTTTTACTCTCATGTGACATCTTTAGAGTTAGCTTGTAGCAACGCTTTTGAGGTTTTGGCTCAAATCTTATTAGAAGAAGACTCTTGTTTGTACCATTGCATATTTTTCATCATAAGCCTCTGTATGTGTCCGAAGGTTTGAT
CDS Sequence
Protein Sequence