Information report for AT5G39890
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0005634 — located in — nucleus
- GO:0071456 — acts upstream of or within — cellular response to hypoxia
- GO:0070483 — acts upstream of or within — detection of hypoxia
- GO:0005829 — located in — cytosol
Functional Keywords
Literature and News
- A genome-wide analysis of the effects of sucrose on gene expression in Arabidopsis seedlings under anoxia. DOI: 10.1104/pp.104.057299 ; PMID: 15734908
- The use of microarrays to study the anaerobic response in Arabidopsis. DOI: 10.1093/aob/mci218 ; PMID: 16033780
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Systematic identification of functional plant modules through the integration of complementary data sources. DOI: 10.1104/pp.112.196725 ; PMID: 22589469
- Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway. DOI: 10.1038/ncomms4425 ; PMID: 24599061
- Ethylene-mediated nitric oxide depletion pre-adapts plants to hypoxia stress. DOI: 10.1038/s41467-019-12045-4 ; PMID: 31488841
- Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. DOI: 10.1105/tpc.19.00463 ; PMID: 31519798
- Molecular basis for cysteine oxidation by plant cysteine oxidases from Arabidopsis thaliana. DOI: 10.1016/j.jsb.2020.107663 ; PMID: 33207269
- New function of Hypoxia-responsive unknown protein in enhanced resistance to biotic stress. DOI: 10.1080/15592324.2020.1868131 ; PMID: 33369516
- The ubiquitin E3 ligase SR1 modulates the submergence response by degrading phosphorylated WRKY33 in Arabidopsis. DOI: 10.1093/plcell/koab062 ; PMID: 33616649
- Hydrogen sulfide reduces cell death through regulating autophagy during submergence in Arabidopsis. DOI: 10.1007/s00299-022-02872-z ; PMID: 35507055
Gene Resources
- UniProt: A0A654G6G3
- EMBL: CACRSJ010000110, CACSHJ010000096
- AlphaFoldDB: A0A654G6G3
- EnsemblPlants: AT5G39890.1
- Gramene: AT5G39890.1
- KEGG: ath:AT5G39890
- ExpressionAtlas: AT5G39890
- InterPro: IPR011051, IPR012864, IPR014710
- PANTHER: PTHR22966, PTHR22966:SF65
- SUPFAM: SSF51182
- Gene3D: 2.60.120.10
- OrthoDB: A0A654G6G3
- SWISS-MODEL: A0A654G6G3
- Conserved Domain Database: cd20289
Sequences
cDNA Sequence
- >AT5G39890.1
GGAAATTAAACCAGCCCATAGAGAGAAAAACCTCTCTTAACGAAGAAAAACAACAACATGGCCCCTGGTTTCTCTTCTCTTTCGAATCTATCTTCTTCTTTTATCCAATCCTTTCCTATTTTTATTCTCACCTTCTCCTCGTTTTTCCCGAAACTGTTCTTTTGCCCTCTTCTCTCAATTTTAATCCACCAAACAAATCGAACAGTGTTCGATAACTTTTAGATTGCAAGTCCTGTTTTTGATTTGGTCGGGAGAAAGAAAACTAGGGTTTTGATGGGAACTGATACAGTTATGTCTGGACGAGTAAGGAAAGATCTATCAAAAACGAATCCAAATGGGAATATTCCTGAGAATCGTTCTAATTCACGTAAGAAGATCCAACGACGGAGTAAGAAAACCCTAATCTGTCCGGTTCAAAAACTATTCGATACTTGTAAGAAAGTTTTCGCTGATGGCAAATCTGGTACCGTCCCTTCTCAAGAAAACATTGAGATGCTTCGAGCCGTTTTGGATGAAATCAAGCCTGAGGATGTTGGCGTAAATCCTAAGATGTCGTATTTTCGATCTACAGTGACCGGACGATCTCCGTTAGTGACGTATCTTCACATCTATGCATGTCATAGATTCTCGATTTGCATTTTCTGTTTACCTCCATCTGGTGTTATCCCTCTTCACAATCACCCGGAGATGACTGTGTTTAGTAAGCTCTTGTTTGGTACAATGCATATCAAATCCTATGATTGGGTCCCTGATTCTCCCCAGCCGAGTTCAGATACTCGTTTGGCGAAAGTGAAAGTAGATTCGGACTTTACCGCACCTTGTGATACTTCTATACTGTACCCGGCTGATGGAGGGAATATGCATTGCTTCACCGCGAAAACGGCTTGCGCGGTTCTTGATGTTATTGGTCCTCCATACTCTGATCCCGCAGGACGTCATTGTACTTACTATTTCGATTATCCGTTCTCTAGTTTCTCGGTCGATGGAGTCGTGGTTGCCGAGGAGGAGAAGGAAGGCTATGCATGGTTGAAGGAGAGGGAAGAGAAGCCAGAGGATTTAACGGTTACTGCATTGATGTATAGTGGACCAACCATCAAAGAATGAATGTGGAAGCATAGCAGAAAAAAAAAACCCTTTCTTTTTCTTTGTTCTGTTAGAGTATTTTCTTGATTTCTGGTTGCATATAAAAAGAGGTTTTTGGAAGTACATAGAAGAACAAATCTAGTATTTATTATTTTATTTAGATAACAGAGAACAACAAGTACACCTTTGTCGGAATGCTGTAGTCTGTGTTTTGGTCAAAGATCCTTACAAGTTTTGTCTTATTATAGCGTTTTTTATTATATATAAAACCATAAGCT - >AT5G39890.2
GGAAATTAAACCAGCCCATAGAGAGAAAAACCTCTCTTAACGAAGAAAAACAACAACATGGCCCCTGGTTTCTCTTCTCTTTCGAATCTATCTTCTTCTTTTATCCAATCCTTTCCTATTTTTATTCTCACCTTCTCCTCGTTTTTCCCGAAACTGTTCTTTTGCCCTCTTCTCTCAATTTTAATCCACCAAACAAATCGAACAGTGTTCGATAACTTTTAGATTGCAAGTCCTGTTTTTGATTTGGTCGGGAGAAAGAAAACTAGGGTTTTGATGGGAACTGATACAGTTATGTCTGGACGAGTAAGGAAAGATCTATCAAAAACGAATCCAAATGGGAATATTCCTGAGAATCGTTCTAATTCACGTAAGAAGATCCAACGACGGAGTAAGAAAACCCTAATCTGTCCGGTTCAAAAACTATTCGATACTTGTAAGAAAGTTTTCGCTGATGGCAAATCTGGTACCGTCCCTTCTCAAGAAAACATTGAGATGCTTCGAGCCGTTTTGGATGAAATCAAGCCTGAGGATGTTGGCGTAAATCCTAAGATGTCGTATTTTCGATCTACAGTGACCGGACGATCTCCGTTAGTGACGTATCTTCACATCTATGCATGTCATAGATTCTCGATTTGCATTTTCTGTTTACCTCCATCTGGTGTTATCCCTCTTCACAATCACCCGGAGATGACTGTGTTTAGTAAGCTCTTGTTTGGTACAATGCATATCAAATCCTATGATTGGGTCCCTGATTCTCCCCAGCCGAGTTCAGATACTCGTTTGGCGAAAGTGAAAGTAGATTCGGACTTTACCGCACCTTGTGATACTTCTATACTGTACCCGGCTGATGGAGGGAATATGCATTGCTTCACCGCGAAAACGGCTTGCGCGGTTCTTGATGTTATTGGTCCTCCATACTCTGATCCCGCAGGACGTCATTGTACTTACTATTTCGATTATCCGTTCTCTAGTTTCTCGGTCGATGGAGTCGTGGTTGCCGAGGAGGAGAAGGAAGGCTATGCATGGTTGAAGGAGAGGGAAGAGAAGCCAGAGGATTTAACGGTTACTGCATTGATGTATAGTGGACCAACCATCAAAGAATGAATGTGGAAGCATAGCAGAAAAAAAAAACCCTTTCTTTTTCTTTGTTCTGTTAGAGTATTTTCTTGATTTCTGGTTGCATATAAAAAGAGGTTTTTGGAAGTACATAGAAGAACAAATCTAGTATTTATTATTTTATTTAGATAACAGAGAACAACAAGTACACCTTTGTCGGAATGCTGTAGTCTGTGTTTTGGTCAAAGATCCTTACAAGTTTTGTCTTATTATAGCGTTTTTTATTATATATAAAACCATAAGCT
CDS Sequence
Protein Sequence