Information report for AT5G39830
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0009543 — located in — chloroplast thylakoid lumen
- GO:0008233 — enables — peptidase activity
- GO:0006508 — involved in — proteolysis
- GO:0009534 — located in — chloroplast thylakoid
- GO:0004252 — enables — serine-type endopeptidase activity
- GO:0009507 — located in — chloroplast
- GO:0009579 — located in — thylakoid
- GO:0031977 — located in — thylakoid lumen
- GO:0009536 — located in — plastid
- GO:0010206 — acts upstream of or within — photosystem II repair
- GO:0005634 — located in — nucleus
Functional Keywords
Literature and News
- Proteome map of the chloroplast lumen of Arabidopsis thaliana. DOI: 10.1074/jbc.M108575200 ; PMID: 11719511
- Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature. DOI: 10.1104/pp.125.4.1912 ; PMID: 11299370
- The gene complement for proteolysis in the cyanobacterium Synechocystis sp. PCC 6803 and Arabidopsis thaliana chloroplasts. DOI: 10.1007/s00294-002-0309-8 ; PMID: 12185496
- Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. DOI: 10.1105/tpc.010304 ; PMID: 11826309
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. DOI: 10.1104/pp.106.080150 ; PMID: 16648217
- Cross genome comparisons of serine proteases in Arabidopsis and rice. DOI: 10.1186/1471-2164-7-200 ; PMID: 16895613
- Protease gene families in Populus and Arabidopsis. DOI: 10.1186/1471-2229-6-30 ; PMID: 17181860
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Deg proteases and their role in protein quality control and processing in different subcellular compartments of the plant cell. DOI: 10.1111/j.1399-3054.2011.01533.x ; PMID: 22008015
- The family of Deg/HtrA proteases in plants. DOI: 10.1186/1471-2229-12-52 ; PMID: 22520048
- Cooperative D1 degradation in the photosystem II repair mediated by chloroplastic proteases in Arabidopsis. DOI: 10.1104/pp.112.199042 ; PMID: 22698923
- Phosphorylation of photosystem II core proteins prevents undesirable cleavage of D1 and contributes to the fine-tuned repair of photosystem II. DOI: 10.1111/tpj.12562 ; PMID: 24862025
- Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family. DOI: 10.3389/fpls.2014.00396 ; PMID: 25161662
- Identification and Roles of Photosystem II Assembly, Stability, and Repair Factors in Arabidopsis. DOI: 10.3389/fpls.2016.00168 ; PMID: 26909098
- Nitrogen remobilization during leaf senescence: lessons from Arabidopsis to crops. DOI: 10.1093/jxb/erw365 ; PMID: 27707774
- Proteome map of the chloroplast lumen of Arabidopsis thaliana. DOI: 10.1074/jbc.M108575200 ; PMID: 11719511
- High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. DOI: 10.1104/pp.106.080150 ; PMID: 16648217
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. DOI: 10.1104/pp.106.080150 ; PMID: 16648217
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: F4KFV6
- EMBL: CP002688
- AlphaFoldDB: F4KFV6
- EnsemblPlants: AT5G39830.2
- Gramene: AT5G39830.2
- ExpressionAtlas: AT5G39830
- InterPro: IPR001478, IPR001940, IPR009003
- PANTHER: PTHR43343, PTHR43343:SF3
- SUPFAM: SSF50156, SSF50494
- Gene3D: 2.30.42.10, 2.40.10.10
- OrthoDB: F4KFV6
- SWISS-MODEL: F4KFV6
- Conserved Domain Database: cd00990
Sequences
cDNA Sequence
- >AT5G39830.2
ACAAAAAATTATCTAAGATTCTTAATTTTATCCAGGTTTTTGCCAAATCGACTGGTCTCAGAGTTTTCTCGATTTTTTTTGGAAAGATGCAGGTAATAGCATCTTTCTGTTCGAAACCTAATGAGAATGAATTTGTTGGTCGACGACAACTTCTTTCTTCAGTCTGTTCCAAAATTTCTCAAGGCGACGTCGTTTCACACCCACCCGTTTCTTCTGTCAAGGTTACTCAAGATTGGAAGTCGAATTTACATGAGTTAGCTGTGAAAAGTGTCCCTTCGACGACAAGGAGAATCTTGTTGACAAGTTTATTCATGAATTTGTGCTTTAATCCTTCAAGGTACTTATCAGCCTTAGCACTTGGTGATCCATCCGTTGCAACCGTTGAAGATGTTAGTCCAACTGTTTTCCCAGCTGGACCTCTTTTCCCTACTGAGGGGAGAATTGTGCAACTGTTTGAGAAGAATACTTATTCCGTTGTCAACATCTTTGATGTGACATTACGGCCTCAGCTCAAAATGACGGGTGTGGTTGAGATACCAGAAGGAAATGGCTCTGGAGTAGTCTGGGACGGACAAGGATACATCGTGACCAATTATCACGTTATTGGCAATGCCCTTTCAAGAAATCCTAGCCCCGGGGATGTAGTTGGTCGTGTGAATATTCTGGCATCTGATGGGGTACAGAAGAACTTTGAAGGAAAACTTGTTGGTGCTGATCGTGCTAAGGATCTTGCTGTCTTGAAGGTGGATGCTCCCGAAACTCTCCTGAAACCGATTAAAGTTGGGCAGTCAAATTCTCTAAAGGTTGGACAGCAGTGTTTAGCAATTGGAAACCCGTTTGGTTTTGACCACACTCTTACGGTTGGTGTCATCAGCGGTCTTAACCGTGACATATTTAGTCAAACTGGAGTTACCATTGGTGGTGGAATTCAAACTGATGCTGCCATTAACCCGGGAAATAGCGGAGGTCCTCTGCTCGATTCAAAAGGGAACTTGATTGGGATCAACACGGCCATTTTCACACAGACAGTATTAAAGATTGTTCCTCAACTAATACAATTCAGCAAAGTCCTTCGAGCTGGTATTAACATAGAATTAGCCCCTGATCCAGTAGCTAATCAACTCAATGTTCGTAATGGAGCCCTTGTCCTTCAGGTACCGGGTAAGAGTCTAGCGGAAAAAGCAGGATTACATCCGACATCCCGGGGTTTTGCTGGTAATATAGTGCTTGGAGATATCATTGTTGCAGTTGATGACAAACCTGTGAAGAACAAAGCCGAGTTGATGAAGATATTGGATGAGTACAGTGTAGGTGATAAGGTGACACTTAAGATTAAGAGAGGAAATGAAGATTTGGAGTTAAAGATCTCATTGGAAGAGAAAAGTTCATGAAAATATTATTGACAACATTTCATCTCTTCCTTTTGAATCTCTCTGTTTTTTCCCCCTTTGAGAATAGCAAAATTACAATCGTTGTCTAAATTCTCTGAATATATGTATGTCTATGGGAATTTTTTTTATTAATATTTAAAATGTTGCCA - >AT5G39830.1
ACAAAAAATTATCTAAGATTCTTAATTTTATCCAGGTTTTTGCCAAATCGACTGGTCTCAGAGTTTTCTCGATTTTTTTTGGAAAGATGCAGGTAATAGCATCTTTCTGTTCGAAACCTAATGAGAATGAATTTGTTGGTCGACGACAACTTCTTTCTTCAGTCTGTTCCAAAATTTCTCAAGGCGACGTCGTTTCACACCCACCCGTTTCTTCTGTCAAGGTTACTCAAGATTGGAAGTCGAATTTACATGAGTTAGCTGTGAAAAGTGTCCCTTCGACGACAAGGAGAATCTTGTTGACAAGTTTATTCATGAATTTGTGCTTTAATCCTTCAAGGTACTTATCAGCCTTAGCACTTGGTGATCCATCCGTTGCAACCGTTGAAGATGTTAGTCCAACTGTTTTCCCAGCTGGACCTCTTTTCCCTACTGAGGGGAGAATTGTGCAACTGTTTGAGAAGAATACTTATTCCGTTGTCAACATCTTTGATGTGACATTACGGCCTCAGCTCAAAATGACGGGTGTGGTTGAGATACCAGAAGGAAATGGCTCTGGAGTAGTCTGGGACGGACAAGGATACATCGTGACCAATTATCACGTTATTGGCAATGCCCTTTCAAGAAATCCTAGCCCCGGGGATGTAGTTGGTCGTGTGAATATTCTGGCATCTGATGGGGTACAGAAGAACTTTGAAGGAAAACTTGTTGGTGCTGATCGTGCTAAGGATCTTGCTGTCTTGAAGGTGGATGCTCCCGAAACTCTCCTGAAACCGATTAAAGTTGGGCAGTCAAATTCTCTAAAGGTTGGACAGCAGTGTTTAGCAATTGGAAACCCGTTTGGTTTTGACCACACTCTTACGGTTGGTGTCATCAGCGGTCTTAACCGTGACATATTTAGTCAAACTGGAGTTACCATTGGTGGTGGAATTCAAACTGATGCTGCCATTAACCCGGGAAATAGCGGAGGTCCTCTGCTCGATTCAAAAGGGAACTTGATTGGGATCAACACGGCCATTTTCACACAGACAGTATTAAAGATTGTTCCTCAACTAATACAATTCAGCAAAGTCCTTCGAGCTGGTATTAACATAGAATTAGCCCCTGATCCAGTAGCTAATCAACTCAATGTTCGTAATGGAGCCCTTGTCCTTCAGGTACCGGGTAAGAGTCTAGCGGAAAAAGCAGGATTACATCCGACATCCCGGGGTTTTGCTGGTAATATAGTGCTTGGAGATATCATTGTTGCAGTTGATGACAAACCTGTGAAGAACAAAGCCGAGTTGATGAAGATATTGGATGAGTACAGTGTAGGTGATAAGGTGACACTTAAGATTAAGAGAGGAAATGAAGATTTGGAGTTAAAGATCTCATTGGAAGAGAAAAGTTCATGAAAATATTATTGACAACATTTCATCTCTTCCTTTTGAATCTCTCTGTTTTTTCCCCCTTTGAGAATAGCAAAATTACAATCGTTGTCTAAATTCTCTGAATATATGTATGTCTATGGGAATTTTTTTTATTAATATTTAAAATGTTGCCA
CDS Sequence
Protein Sequence