Information report for AT5G39790
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0010581 — involved in — regulation of starch biosynthetic process
- GO:0030247 — enables — polysaccharide binding
- GO:0005515 — enables — protein binding
- GO:0019252 — acts upstream of or within — starch biosynthetic process
- GO:2001070 — enables — starch binding
- GO:0005739 — located in — mitochondrion
- GO:0009570 — located in — chloroplast stroma
- GO:0009507 — located in — chloroplast
- GO:0009569 — located in — chloroplast starch grain
Functional Keywords
Literature and News
- Detection of in vivo protein interactions between Snf1-related kinase subunits with intron-tagged epitope-labelling in plants cells. DOI: 10.1093/nar/29.17.3685 ; PMID: 11522840
- Transcriptional profile of the Arabidopsis root quiescent center. DOI: 10.1105/tpc.105.031724 ; PMID: 15937229
- A chloroplast-localized dual-specificity protein phosphatase in Arabidopsis contains a phylogenetically dispersed and ancient carbohydrate-binding domain, which binds the polysaccharide starch. DOI: 10.1111/j.1365-313X.2006.02704.x ; PMID: 16623901
- Natural variation for carbohydrate content in Arabidopsis. Interaction with complex traits dissected by quantitative genetics. DOI: 10.1104/pp.106.082396 ; PMID: 16798941
- Arabidopsis At5g39790 encodes a chloroplast-localized, carbohydrate-binding, coiled-coil domain-containing putative scaffold protein. DOI: 10.1186/1471-2229-8-120 ; PMID: 19038037
- PROTEIN TARGETING TO STARCH is required for localising GRANULE-BOUND STARCH SYNTHASE to starch granules and for normal amylose synthesis in Arabidopsis. DOI: 10.1371/journal.pbio.1002080 ; PMID: 25710501
- Two Plastidial Coiled-Coil Proteins Are Essential for Normal Starch Granule Initiation in Arabidopsis. DOI: 10.1105/tpc.18.00219 ; PMID: 29866647
- Natural Polymorphisms in Arabidopsis Result in Wide Variation or Loss of the Amylose Component of Starch. DOI: 10.1104/pp.19.01062 ; PMID: 31694903
- and Damage-Associated Molecular Patterns by Leucine-Rich Repeat Pattern Recognition Receptor Kinases Confers Salt Tolerance in Plants. DOI: 10.1094/MPMI-07-21-0185-FI ; PMID: 34726476
Gene Resources
- UniProt: A0A654G6L7
- EMBL: CACRSJ010000110
- AlphaFoldDB: A0A654G6L7
- EnsemblPlants: AT5G39790.1
- Gramene: AT5G39790.1
- KEGG: ath:AT5G39790
- ExpressionAtlas: AT5G39790
- InterPro: IPR013783, IPR014756, IPR032640
- PANTHER: PTHR47342, PTHR47342:SF1
- SUPFAM: SSF81296
- Gene3D: 2.60.40.10
- OrthoDB: A0A654G6L7
- SWISS-MODEL: A0A654G6L7
- Conserved Domain Database: cd02859
Sequences
cDNA Sequence
- >AT5G39790.1
GTTCTGGGGTTTATCAGTGTTTCCAGCTTCTTCTTCTTCTTCACAGCTTTCTCGATATTTTTGAGAGTTTTTAACCAAATTAGACATTTTTAATCAATTTTTTTTTGTGTTGAGCAAGACGAAAAGAGTCTAATCCAATCATGGGATGTGTACCCAGAATTGAATTTGGTTGTTCAAGCCAAAGCCTTACTCTTTCATGGAACTTAAGAGCATGGAATTTGTGTAGATTGAACACAATCTCCCATTTCCAGAAACTTCCTTATCCTTTGGTAGCTTCTACTCGAAAACATTACAAGAACAGTTTGCTTTTGAAGAGATTTTTAGTTGGTGTTGGCACTGAGGAATCATCACTGTCAGAAGATTTACTAGATGAATCTCTTTCTCGACCTCTCACTAGTGATGAGTTGAAGTCACTGCTCATTGATACAGAGAGATCAAAGCTTGTTAAAAAATTGAGTGAAGCTAATCAACAGAATCGGTTCCTCAAGCGTCAGGAACATGAGATAACTAACATCAAAACTGAGCTTGCACTTATGGAGCTCGAAGTTCAGGCTCTGGTGAAACTGGCGGAAGAAATAGCAAACCTTGGTATCCCACAAGGTTCTAGAAAAATCAGTGGAAAGTACATTCAATCGCACCTTCTCTCTCGTTTAGACGCTGTTCAAAAAAAGATGAAAGAACAAATAAAAGGTGTCGAGGCTGCACAGTCAAAGGAGGTTCATGTGTTCTGGATTGGCATGGCAGAGAGTGTACAAGTAATGGGATCGTTCGATGGATGGAGCCAACGTGAGGATCTATCGCCTGAGTACTCAGCTTTATTCACCAAATTCTCCACAACGTTATTCCTTCGTCCCGGGCGGTACGAGATGAAGTTCTTAGTGGATGGAGAATGGCAGATCTCACCCGAGTTTCCTACTTCAGGAGAAGGATTGATGGAGAACAATGTTTTAGTGGTGGAATAGCCACTCATCTTTCTGCATTACACCCGTAAACATTTAAGATTGGTGTGGATGAGATTGTAGACAATAGAATCTGAGTATTAGATACAAGGAATAGTATAATAGGTGGCAGGAGTCATTTGGATTTCTTATCTTTTGTTCACACAAAATCCAATCAATTTTTCCCATCTCTCAAAAGTTCTCTTGGTTTTGATTTCGTTTCATTGTTGTTTTGGCATTAGCTTTGAATCCATAGAGAGAAGATAGGTAGGTTCCATGTACATCAGAAATTTCTTGGTTTGTAAGAAAGAGATATTGGAAACAGAAGAATGAAGAAGAG - >AT5G39790.2
GTTCTGGGGTTTATCAGTGTTTCCAGCTTCTTCTTCTTCTTCACAGCTTTCTCGATATTTTTGAGAGTTTTTAACCAAATTAGACATTTTTAATCAATTTTTTTTTGTGTTGAGCAAGACGAAAAGAGTCTAATCCAATCATGGGATGTGTACCCAGAATTGAATTTGGTTGTTCAAGCCAAAGCCTTACTCTTTCATGGAACTTAAGAGCATGGAATTTGTGTAGATTGAACACAATCTCCCATTTCCAGAAACTTCCTTATCCTTTGGTAGCTTCTACTCGAAAACATTACAAGAACAGTTTGCTTTTGAAGAGATTTTTAGTTGGTGTTGGCACTGAGGAATCATCACTGTCAGAAGATTTACTAGATGAATCTCTTTCTCGACCTCTCACTAGTGATGAGTTGAAGTCACTGCTCATTGATACAGAGAGATCAAAGCTTGTTAAAAAATTGAGTGAAGCTAATCAACAGAATCGGTTCCTCAAGCGTCAGGAACATGAGATAACTAACATCAAAACTGAGCTTGCACTTATGGAGCTCGAAGTTCAGGCTCTGGTGAAACTGGCGGAAGAAATAGCAAACCTTGGTATCCCACAAGGTTCTAGAAAAATCAGTGGAAAGTACATTCAATCGCACCTTCTCTCTCGTTTAGACGCTGTTCAAAAAAAGATGAAAGAACAAATAAAAGGTGTCGAGGCTGCACAGTCAAAGGAGGTTCATGTGTTCTGGATTGGCATGGCAGAGAGTGTACAAGTAATGGGATCGTTCGATGGATGGAGCCAACGTGAGGATCTATCGCCTGAGTACTCAGCTTTATTCACCAAATTCTCCACAACGTTATTCCTTCGTCCCGGGCGGTACGAGATGAAGTTCTTAGTGGATGGAGAATGGCAGATCTCACCCGAGTTTCCTACTTCAGGAGAAGGATTGATGGAGAACAATGTTTTAGTGGTGGAATAGCCACTCATCTTTCTGCATTACACCCGTAAACATTTAAGATTGGTGTGGATGAGATTGTAGACAATAGAATCTGAGTATTAGATACAAGGAATAGTATAATAGGTGGCAGGAGTCATTTGGATTTCTTATCTTTTGTTCACACAAAATCCAATCAATTTTTCCCATCTCTCAAAAGTTCTCTTGGTTTTGATTTCGTTTCATTGTTGTTTTGGCATTAGCTTTGAATCCATAGAGAGAAGATAGGTAGGTTCCATGTACATCAGAAATTTCTTGGTTTGTAAGAAAGAGATATTGGAAACAGAAGAATGAAGAAGAG - >AT5G39790.3
GTTCTGGGGTTTATCAGTGTTTCCAGCTTCTTCTTCTTCTTCACAGCTTTCTCGATATTTTTGAGAGTTTTTAACCAAATTAGACATTTTTAATCAATTTTTTTTTGTGTTGAGCAAGACGAAAAGAGTCTAATCCAATCATGGGATGTGTACCCAGAATTGAATTTGGTTGTTCAAGCCAAAGCCTTACTCTTTCATGGAACTTAAGAGCATGGAATTTGTGTAGATTGAACACAATCTCCCATTTCCAGAAACTTCCTTATCCTTTGGTAGCTTCTACTCGAAAACATTACAAGAACAGTTTGCTTTTGAAGAGATTTTTAGTTGGTGTTGGCACTGAGGAATCATCACTGTCAGAAGATTTACTAGATGAATCTCTTTCTCGACCTCTCACTAGTGATGAGTTGAAGTCACTGCTCATTGATACAGAGAGATCAAAGCTTGTTAAAAAATTGAGTGAAGCTAATCAACAGAATCGGTTCCTCAAGCGTCAGGAACATGAGATAACTAACATCAAAACTGAGCTTGCACTTATGGAGCTCGAAGTTCAGGCTCTGGTGAAACTGGCGGAAGAAATAGCAAACCTTGGTATCCCACAAGGTTCTAGAAAAATCAGTGGAAAGTACATTCAATCGCACCTTCTCTCTCGTTTAGACGCTGTTCAAAAAAAGATGAAAGAACAAATAAAAGGTGTCGAGGCTGCACAGTCAAAGGAGGTTCATGTGTTCTGGATTGGCATGGCAGAGAGTGTACAAGTAATGGGATCGTTCGATGGATGGAGCCAACGTGAGGATCTATCGCCTGAGTACTCAGCTTTATTCACCAAATTCTCCACAACGTTATTCCTTCGTCCCGGGCGGTACGAGATGAAGTTCTTAGTGGATGGAGAATGGCAGATCTCACCCGAGTTTCCTACTTCAGGAGAAGGATTGATGGAGAACAATGTTTTAGTGGTGGAATAGCCACTCATCTTTCTGCATTACACCCGTAAACATTTAAGATTGGTGTGGATGAGATTGTAGACAATAGAATCTGAGTATTAGATACAAGGAATAGTATAATAGGTGGCAGGAGTCATTTGGATTTCTTATCTTTTGTTCACACAAAATCCAATCAATTTTTCCCATCTCTCAAAAGTTCTCTTGGTTTTGATTTCGTTTCATTGTTGTTTTGGCATTAGCTTTGAATCCATAGAGAGAAGATAGGTAGGTTCCATGTACATCAGAAATTTCTTGGTTTGTAAGAAAGAGATATTGGAAACAGAAGAATGAAGAAGAG
CDS Sequence
Protein Sequence